Pre_GI Gene

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Host: NC_005139 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_005139:2731623 Vibrio vulnificus YJ016 chromosome I, complete sequence

Host Lineage: Vibrio vulnificus; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: This is a Biotype 1 hospital isolate from Taiwan. It contains larger chromosomes and >1000 genes as compared to Vibrio cholerae and contains a conjugative plasmid, pYJ016. There are numerous virulence factors including a cytolysin, protease, capsular polysaccharide as well as iron-uptake systems encoded in the genome. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. Organisms of this species are opportunistic pathogens that can attack immunocompromised patients and causes gastroenteritis (inflammation of mucous membranes of stomach and intestine), wound infections, and primary septicemia (spread of the organism through the blood). This organism is the major cause of death from eating raw oysters, especially in people with liver damage. It only affects humans and other primates.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
273061927316321014collagenaseQuickGO ontologyBLASTP
27316232732528906collagenaseQuickGO ontologyBLASTP
273261927339531335Na-driven multidrug efflux pumpQuickGO ontologyBLASTP
27339812734394414transcriptional regulatorQuickGO ontologyBLASTP
27343772734499123hypothetical protein
27345692735477909lipoprotein NlpIQuickGO ontologyBLASTP
273559827377752178polyribonucleotide nucleotidyltransferaseQuickGO ontologyBLASTP
27382282738983756hypothetical proteinBLASTP
27390332739770738hypothetical proteinBLASTP
27395442739723180hypothetical protein
27397972740537741hypothetical proteinBLASTP
27405372741178642hypothetical proteinBLASTP
274115927441583000hypothetical proteinBLASTP
27438812744015135hypothetical protein
2744367274463627030S ribosomal protein S15QuickGO ontologyBLASTP
27447892745733945tRNA pseudouridine synthase BQuickGO ontologyBLASTP
27457332746179447ribosome-binding factor AQuickGO ontologyBLASTP
274622827489512724translation initiation factor IF-2QuickGO ontologyBLASTP
274897627504631488transcription elongation factor NusAQuickGO ontologyBLASTP
27504992750954456hypothetical proteinBLASTP
27514002751732333translocaseQuickGO ontologyBLASTP
27517432751904162hypothetical protein
275199427533341341phosphomannomutaseQuickGO ontologyBLASTP
27533632754193831dihydropteroate synthaseQuickGO ontologyBLASTP