Pre_GI: BLASTP Hits

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Query: NC_004741:366822:385243 Shigella flexneri 2a str. 2457T, complete genome

Start: 385243, End: 385431, Length: 189

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This is a highly virulent strain that has been widely used for genetic and clinical research. Causes enteric disease. This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017319:155958:1744061744061760071602Shigella flexneri 2002017 plasmid pSFxv_1, complete sequenceISSfl4 ORF38e-1992.4
NC_004851:157675:1744761744761760771602Shigella flexneri 2a str. 301 plasmid pCP301, complete sequenceISSfl4 ORF38e-1992.4
NC_004851:157675:1677601677601693611602Shigella flexneri 2a str. 301 plasmid pCP301, complete sequenceISSfl4 ORF38e-1992.4
NC_010660:33109:4851348513501141602Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequencetransposase family8e-1992.4
NC_004741:366822:3839783839783850271050Shigella flexneri 2a str. 2457T, complete genomeISSfl3 orfD1e-1891.7
NC_008258:401786:422496422496423302807Shigella flexneri 5 str. 8401, complete genomeISSfl4 ORF32e-1891.3
NC_004337:367687:384845384845385651807Shigella flexneri 2a str. 301, complete genomeISSfl4 ORF32e-1891.3
NC_004337:3590323:385062438506243851430807Shigella flexneri 2a str. 301, complete genomeISSfl4 ORF32e-1891.3
NC_017328:385552:402709402709403515807Shigella flexneri 2002017 chromosome, complete genomeISSfl3 orfC,D2e-1891.3
NC_017319:155958:1664221664221675131092Shigella flexneri 2002017 plasmid pSFxv_1, complete sequenceISSfl4 ORF32e-1891.3
NC_011601:3338888:3342182334218233435521371Escherichia coli O127:H6 str. E2348/69 chromosome, complete genome1e-1581.6
NC_002655:3919545:3922839392283939242871449Escherichia coli O157:H7 EDL933, complete genomeunknown protein encoded by ISEc82e-1581.3
NC_002695:3852233:3855527385552738569751449Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein2e-1581.3
NC_013941:3676146:3679440367944036808881449Escherichia coli O55:H7 str. CB9615 chromosome, complete genometransposase-like protein2e-1581.3
AP010958:3627355:3630649363064936320971449Escherichia coli O103:H2 str. 12009 DNA, complete genomehypothetical protein2e-1581.3
AP010958:5090696:5114943511494351163911449Escherichia coli O103:H2 str. 12009 DNA, complete genomehypothetical protein2e-1581.3
NC_013353:3627355:3630649363064936320971449Escherichia coli O103:H2 str. 12009, complete genomehypothetical protein2e-1581.3
NC_013353:5090696:5114943511494351163911449Escherichia coli O103:H2 str. 12009, complete genomehypothetical protein2e-1581.3
NC_013008:3911356:3914650391465039158521203Escherichia coli O157:H7 str. TW14359 chromosome, complete genomehypothetical protein4e-1580.1
NC_011353:3956630:3959924395992439611261203Escherichia coli O157:H7 str. EC4115 chromosome, complete genome4e-1580.1
NC_013008:4643825:4645999464599946475371539Escherichia coli O157:H7 str. TW14359 chromosome, complete genometransposase, ISEc83e-1477.4
NC_002655:1053082:1070093107009310716311539Escherichia coli O157:H7 EDL933, complete genomeunknown protein encoded in ISEc83e-1477.4
NC_002655:1448605:1465700146570014672381539Escherichia coli O157:H7 EDL933, complete genomeunknown protein encoded in ISEc83e-1477.4
NC_002655:4653160:4655837465583746573751539Escherichia coli O157:H7 EDL933, complete genomeunknown protein encoded by ISEc8 within prophage CP-933L3e-1477.4
NC_011353:4688000:4689958468995846914961539Escherichia coli O157:H7 str. EC4115 chromosome, complete genomeIS66 family element, transposase3e-1477.4
NC_002695:4584177:4586854458685445883921539Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein3e-1477.4
NC_009801:1756610:1759035175903517605731539Escherichia coli E24377A, complete genomeIS66 family element, transposase3e-1477.4
NC_009790:42112:6525765257667951539Escherichia coli E24377A plasmid pETEC_74, complete sequenceIS66 family element, transposase3e-1477.4
NC_009801:1392696:1410400141040014119381539Escherichia coli E24377A, complete genomeIS66 family element, transposase3e-1477.4
NC_009788:16360:1636016360178981539Escherichia coli E24377A plasmid pETEC_73, complete sequenceIS66 family element, transposase3e-1477.4
NC_002695:1364833:1381928138192813834661539Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein3e-1477.4
NC_002655:3919545:3938489393848939400271539Escherichia coli O157:H7 EDL933, complete genomeunknown protein encoded by ISEc83e-1477.4
NC_007606:4182188:4195938419593841974761539Shigella dysenteriae Sd197, complete genomeISSfl4 ORF32e-1477.4
NC_013364:1257801:1275737127573712772751539Escherichia coli O111:H- str. 11128, complete genomehypothetical protein2e-1477.4
NC_013008:3911356:3930299393029939318371539Escherichia coli O157:H7 str. TW14359 chromosome, complete genometransposase, ISEc83e-1477.4
NC_013008:1715831:1727771172777117293091539Escherichia coli O157:H7 str. TW14359 chromosome, complete genometransposase ISEc83e-1477.4
NC_013008:1307392:1325800132580013273381539Escherichia coli O157:H7 str. TW14359 chromosome, complete genometransposase ISEc83e-1477.4
NC_011353:3956630:3974258397425839757961539Escherichia coli O157:H7 str. EC4115 chromosome, complete genomeIS66 family element, transposase3e-1477.4
NC_011353:1716037:1728796172879617303341539Escherichia coli O157:H7 str. EC4115 chromosome, complete genomeIS66 family element, transposase3e-1477.4
NC_011353:1307106:1325514132551413270521539Escherichia coli O157:H7 str. EC4115 chromosome, complete genomeIS66 family element, transposase3e-1477.4
NC_002695:1794635:1807205180720518087431539Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein3e-1477.4
NC_002655:2264773:2278434227843422799721539Escherichia coli O157:H7 EDL933, complete genomeunknown protein encoded in ISEc83e-1477.4
NC_002695:3852233:3871323387132338727141392Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein3e-1477
NC_011745:333061:3364473364473378531407Escherichia coli ED1a chromosome, complete genomeputative transposase ORF 1, IS66 family5e-1476.6
NC_014228:2270000:2294283229428322958541572Xenorhabdus nematophila ATCC 19061, complete genomeputative transposase4e-1476.6
NC_013716:5201097:5263948526394852655191572Citrobacter rodentium ICC168, complete genomeIS679 transposase C4e-1476.6
NC_010660:86445:9584195841973791539Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequenceIS66 family element, transposase5e-1476.3
NC_010660:33109:4270642706442441539Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequence5e-1476.3
NC_004431:3409389:3411690341169034128081119Escherichia coli CFT073, complete genomeUnknown protein encoded by ISEc8 within prophage8e-1475.9
NC_016845:2274500:2293878229387822954161539Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,hypothetical protein7e-1475.9
NC_016822:2940000:2955331295533129567221392Shigella sonnei 53G, complete genomeprotein encoded within IS7e-1475.9
NC_014839:68308:8910089100906711572Pantoea sp. At-9b plasmid pPAT9B02, complete sequence9e-1475.5
NC_010515:2691000:2703035270303527045851551Burkholderia cenocepacia MC0-3 chromosome 2, complete sequencetransposase IS661e-1375.1
NC_007510:1959883:2004236200423620058311596Burkholderia sp. 383 chromosome 1, complete sequencetransposase IS661e-1375.1
NC_013361:3313284:3315817331581733173881572Escherichia coli O26:H11 str. 11368 chromosome, complete genomehypothetical protein2e-1374.7
NC_013361:3867558:3896516389651638980871572Escherichia coli O26:H11 str. 11368 chromosome, complete genomehypothetical protein2e-1374.7
NC_009801:3374501:3389189338918933907601572Escherichia coli E24377A, complete genomeIS66 family element, transposase2e-1374.7
NC_009801:1756610:1756610175661017581811572Escherichia coli E24377A, complete genomeIS66 family element, transposase2e-1374.7
NC_009790:42112:4528445284468551572Escherichia coli E24377A plasmid pETEC_74, complete sequenceIS66 family element, transposase2e-1374.7
NC_007951:4576825:4580182458018245817501569Burkholderia xenovorans LB400 chromosome 1, complete sequenceTransposase3e-1373.9
NC_011748:4792703:479335647933564794270915Escherichia coli 55989, complete genomeconserved hypothetical protein, putative transposase (fragment)4e-1373.6
CU928145:4792703:479335647933564794270915Escherichia coli 55989 chromosome, complete genomeconserved hypothetical protein, putative transposase (fragment)4e-1373.6
NC_013716:3327881:3358552335855233601231572Citrobacter rodentium ICC168, complete genomeISCro1 transposase C4e-1373.6
NC_013716:4306695:4311401431140143129721572Citrobacter rodentium ICC168, complete genomeISCro1 transposase C4e-1373.6
NC_013716:2764550:2788992278899227905631572Citrobacter rodentium ICC168, complete genomeISCro1 transposase C4e-1373.6
NC_013716:1138441:1144172114417211457431572Citrobacter rodentium ICC168, complete genomeISCro1 transposase C4e-1373.6
NC_013716:2476334:2483056248305624846271572Citrobacter rodentium ICC168, complete genomeISCro1 transposase C4e-1373.6
NC_013716:4824541:4833597483359748351681572Citrobacter rodentium ICC168, complete genomeISCro1 transposase C4e-1373.6
NC_013716:3708415:3723587372358737251581572Citrobacter rodentium ICC168, complete genomeISCro1 transposase C4e-1373.6
NC_013716:2764550:2792874279287427944451572Citrobacter rodentium ICC168, complete genomeISCro1 transposase C4e-1373.6
NC_004337:3049118:306639230663923067306915Shigella flexneri 2a str. 301, complete genomehypothetical protein3e-1373.6
NC_017328:3088907:310618031061803107094915Shigella flexneri 2002017 chromosome, complete genomeputative transposase3e-1373.6
NC_004431:3409389:3482090348209034836281539Escherichia coli CFT073, complete genomeUnknown protein encoded by ISEc8 within prophage5e-1373.2
NC_011751:3453683:3505155350515535067291575Escherichia coli UMN026 chromosome, complete genomeputative transposase ORF 1, IS66 family4e-1373.2
NC_013353:3853082:3878931387893138804691539Escherichia coli O103:H2 str. 12009, complete genomehypothetical protein7e-1372.8
AP010958:3853082:3878931387893138804691539Escherichia coli O103:H2 str. 12009 DNA, complete genomehypothetical protein7e-1372.8
AP010958:5090696:5090696509069650919701275Escherichia coli O103:H2 str. 12009 DNA, complete genomehypothetical protein9e-1372.4
AP010958:3627355:3654332365433236556061275Escherichia coli O103:H2 str. 12009 DNA, complete genome9e-1372.4
NC_013353:3627355:3654332365433236556061275Escherichia coli O103:H2 str. 12009, complete genome9e-1372.4
NC_013353:5090696:5090696509069650919701275Escherichia coli O103:H2 str. 12009, complete genomehypothetical protein9e-1372.4
NC_013941:3676146:3702425370242537038281404Escherichia coli O55:H7 str. CB9615 chromosome, complete genometransposase-like protein8e-1372.4
NC_011000:1262324:1280799128079912823701572Burkholderia cenocepacia J2315 chromosome 1, complete sequenceputative transposase8e-1372.4
NC_011001:302500:3038913038913054621572Burkholderia cenocepacia J2315 chromosome 2, complete sequenceputative transposase8e-1372.4
NC_002655:3919545:3940813394081339422161404Escherichia coli O157:H7 EDL933, complete genomeunknown protein encoded by ISEc87e-1372.4
NC_002695:3852233:3873500387350038749031404Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein7e-1372.4
NC_011353:3956630:3976582397658239779851404Escherichia coli O157:H7 str. EC4115 chromosome, complete genome7e-1372.4
NC_013008:3911356:3932623393262339340261404Escherichia coli O157:H7 str. TW14359 chromosome, complete genomehypothetical protein7e-1372.4
NC_007651:1620000:1638173163817316397441572Burkholderia thailandensis E264 chromosome I, complete sequenceTnpC protein1e-1272
NC_007651:3064530:3141963314196331435341572Burkholderia thailandensis E264 chromosome I, complete sequenceTnpC protein1e-1272
NC_007651:3064530:3070382307038230719531572Burkholderia thailandensis E264 chromosome I, complete sequenceTnpC protein1e-1272
NC_007651:1620000:1625456162545616270271572Burkholderia thailandensis E264 chromosome I, complete sequenceTnpC protein1e-1272
NC_007651:1620000:1642905164290516444761572Burkholderia thailandensis E264 chromosome I, complete sequenceTnpC protein1e-1272
NC_007651:3560652:3583408358340835849791572Burkholderia thailandensis E264 chromosome I, complete sequenceTnpC protein1e-1272
NC_007946:4779745:4812884481288448144521569Escherichia coli UTI89, complete genomehypothetical protein1e-1271.6
NC_013361:3313284:3317471331747133185201050Escherichia coli O26:H11 str. 11368 chromosome, complete genome1e-1271.6
NC_004431:3409389:3480993348099334820931101Escherichia coli CFT073, complete genomeUnknown in ISEc83e-1270.5
NC_011751:3453683:3504094350409435051941101Escherichia coli UMN026 chromosome, complete genome3e-1270.5
CP002797:4603787:4622390462239046240031614Escherichia coli NA114, complete genomeIS-66 transposase4e-1270.1
NC_007651:1620000:1640225164022516417961572Burkholderia thailandensis E264 chromosome I, complete sequenceTnpC protein5e-1270.1
AP010958:3853082:3871286387128638724161131Escherichia coli O103:H2 str. 12009 DNA, complete genome6e-1269.7
NC_013353:3853082:3871286387128638724161131Escherichia coli O103:H2 str. 12009, complete genome6e-1269.7
NC_009254:74000:9473494734963351602Burkholderia vietnamiensis G4 chromosome 3, complete sequencetransposase IS665e-1269.7
NC_009254:637952:6430066430066446071602Burkholderia vietnamiensis G4 chromosome 3, complete sequencetransposase IS665e-1269.7
NC_011601:3338888:3365174336517433665771404Escherichia coli O127:H6 str. E2348/69 chromosome, complete genometransposase Orf3 of IS6825e-1269.7
NC_014029:331919:3936873936873952851599Yersinia pestis Z176003 chromosome, complete genomehypothetical protein6e-1269.3
NC_013361:1284579:1302517130251713040491533Escherichia coli O26:H11 str. 11368 chromosome, complete genomehypothetical protein1e-1168.9
NC_010658:3622610:3626317362631736279091593Shigella boydii CDC 3083-94, complete genomeIS66 family element, transposase2e-1168.2
NC_010660:33109:3845938459400511593Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequenceIS66 family element, transposase2e-1168.2
NC_010658:1933605:1949452194945219510051554Shigella boydii CDC 3083-94, complete genomeIS66 family element, transposase2e-1167.8
NC_004431:3409389:3453103345310334545841482Escherichia coli CFT073, complete genomeUnknown in ISEc83e-1167.4
NC_011751:3453683:3476115347611534776831569Escherichia coli UMN026 chromosome, complete genome3e-1167
NC_005241:157741:1581191581191596721554Ralstonia eutropha H16 megaplasmid pHG1, complete sequencetransposase7e-1165.9
NC_012791:721813:7265337265337280081476Variovorax paradoxus S110 chromosome 1, complete genometransposase IS669e-1165.5
NC_009256:2907998:2913273291327329148171545Burkholderia vietnamiensis G4 chromosome 1, complete sequencetransposase IS662e-1064.3
NC_009255:1105786:1115921111592111174651545Burkholderia vietnamiensis G4 chromosome 2, complete sequencetransposase IS662e-1064.3
NC_009254:745706:7639207639207654641545Burkholderia vietnamiensis G4 chromosome 3, complete sequencetransposase IS662e-1064.3
NC_010676:2793237:2807776280777628093711596Burkholderia phytofirmans PsJN chromosome 2, complete sequencetransposase IS663e-1063.9
NC_007951:769500:7764467764467780441599Burkholderia xenovorans LB400 chromosome 1, complete sequencehypothetical protein3e-1063.9
NC_015458:3328905:3347304334730433489021599Pusillimonas sp. T7-7 chromosome, complete genometransposase TnpC protein4e-0960.1
NC_014722:1191380:1196833119683311985481716Burkholderia rhizoxinica HKI 454, complete genometransposase1e-0858.9
NC_007626:3522265:3601579360157936031771599Magnetospirillum magneticum AMB-1, complete genomeTransposase and inactivated derivative5e-0856.6
NC_015976:2023540:2027233202723320287711539Sphingobium sp. SYK-6, complete genomeputative transposase for insertion sequence element5e-0856.6
NC_015563:1951368:1955145195514519567551611Delftia sp. Cs1-4 chromosome, complete genometransposase IS666e-0856.2
CU928159:30700:318303183032756927Escherichia coli str. 55989 plasmid 55989p, complete genomeconserved hypothetical protein1e-0755.5
NC_007762:88979:9161691616931811566Rhizobium etli CFN 42 plasmid p42a, complete sequenceputative insertion sequence transposase protein, IS66 family3e-0753.9
NC_007762:88979:1074261074261089911566Rhizobium etli CFN 42 plasmid p42a, complete sequenceprobable insertion sequence transposase protein, IS66 family3e-0753.9
NC_011004:1174813:1177349117734911788771529Rhodopseudomonas palustris TIE-1, complete genome9e-0752.4
NC_013857:478000:480000480000480938939Azospirillum sp. B510 plasmid pAB510c, complete sequencetransposase1e-0652
NC_013854:3200912:320091232009123201790879Azospirillum sp. B510, complete genometransposase1e-0652
NC_007626:3522265:3606231360623136077811551Magnetospirillum magneticum AMB-1, complete genomeTransposase and inactivated derivative2e-0650.8
NC_009485:5171658:5213392521339252150411650Bradyrhizobium sp. BTAi1 chromosome, complete genomeIS66 family insertion sequence transposase protein3e-0650.4
NC_011892:77975:1104101104101119271518Methylobacterium nodulans ORS 2060 plasmid pMNOD01, completetransposase IS664e-0650.1
NC_011894:4360577:4384195438419543857121518Methylobacterium nodulans ORS 2060, complete genometransposase IS664e-0650.1
NC_011894:6418000:6419867641986764213841518Methylobacterium nodulans ORS 2060, complete genometransposase IS664e-0650.1
NC_007958:4371125:439201343920134392555543Rhodopseudomonas palustris BisB5, complete genome4e-0650.1
NC_010660:33109:355783557835715138Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequencetransposase family4e-0650.1
NC_009484:857384:8709868709868726471662Acidiphilium cryptum JF-5 chromosome, complete genometransposase IS664e-0650.1
NC_016588:133943:1525881525881542161629Azospirillum lipoferum 4B plasmid AZO_p6, complete sequenceTransposase of ISAli10, IS66 family. ORFC4e-0650.1
NC_008435:1131242:115876811587681159576809Rhodopseudomonas palustris BisA53, complete genome5e-0649.7
NC_017322:1360764:1373644137364413753261683Sinorhizobium meliloti BL225C chromosome, complete genometransposase IS668e-0649.3
NC_017323:689512:6935616935616951261566Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequencetransposase IS668e-0649.3