Pre_GI: OUP Neighbours

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Query: NC_013198:36829 Lactobacillus rhamnosus GG, complete genome

D: 31.5674

Host Lineage: Lactobacillus rhamnosus; Lactobacillus; Lactobacillaceae; Lactobacillales; Firmicutes; Bacteria

General Information: They are commonly found in the oral, vaginal, and intestinal regions of many animals. They are important industrial microbes that contribute to the production of cheese, yogurt, and other products such as fermented milks, all stemming from the production of lactic acid, which inhibits the growth of other organisms as well as lowering the pH of the food product. Industrial production requires the use of starter cultures, which are carefully cultivated, created, and maintained, which produce specific end products during fermentation that impart flavor to the final product, as well as contributing important metabolic reactions, such as the breakdown of milk proteins during cheese production. The end product of fermentation, lactic acid, is also being used as a starter molecule for complex organic molecule syntheses. Lactobacillus rhamnosus is used in the manufacture of cheese and other dairy products to aid ripening and enhance flavors. This organism has also been shown to stimulate the immune system and have antibacterial activity against intestinal pathogens, indicating that it may be useful as a probiotic.

Number of Neighbours: 103




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host Description Compositional Similarity Proposed Island FlowSubject Island D
NC_015428:193817Lactobacillus buchneri NRRL B-30929 chromosome, complete genome77.7635 %Subject ←→ Query22.7687
NC_015697:116000*Lactobacillus reuteri SD2112 chromosome, complete genome75.4381 %Subject ←→ Query22.793
NC_015428:2019500*Lactobacillus buchneri NRRL B-30929 chromosome, complete genome76.155 %Subject ←→ Query23.2156
NC_015697:256000*Lactobacillus reuteri SD2112 chromosome, complete genome75.527 %Subject ←→ Query23.2612
NC_014334:1039248Lactobacillus casei str. Zhang chromosome, complete genome80.2298 %Subject ←→ Query24.0151
NC_014334:2696000Lactobacillus casei str. Zhang chromosome, complete genome80.3983 %Subject ←→ Query25.2128
NC_014334:2307950Lactobacillus casei str. Zhang chromosome, complete genome79.2678 %Subject ←→ Query25.5593
NC_010999:349252Lactobacillus casei, complete genome78.557 %Subject ←→ Query25.611
NC_010080:1885677Lactobacillus helveticus DPC 4571, complete genome78.2445 %Subject ←→ Query25.9241
NC_010080:1911932Lactobacillus helveticus DPC 4571, complete genome78.171 %Subject ←→ Query25.9336
NC_012913:56258*Aggregatibacter aphrophilus NJ8700, complete genome75.2053 %Subject ←→ Query26.297
NC_014334:369974Lactobacillus casei str. Zhang chromosome, complete genome80.527 %Subject ←→ Query26.4531
NC_010999:2059738Lactobacillus casei, complete genome78.2047 %Subject ←→ Query26.5655
NC_008497:1575884*Lactobacillus brevis ATCC 367, complete genome77.4203 %Subject ←→ Query26.8361
NC_008526:2373190Lactobacillus casei ATCC 334, complete genome79.3627 %Subject ←→ Query26.8543
NC_015975:1593797Lactobacillus ruminis ATCC 27782 chromosome, complete genome75.9712 %Subject ←→ Query26.9455
NC_013166:194614*Kangiella koreensis DSM 16069, complete genome75.2819 %Subject ←→ Query27.042
NC_010999:2516000Lactobacillus casei, complete genome80.2696 %Subject ←→ Query27.1158
NC_010999:2483000Lactobacillus casei, complete genome79.3689 %Subject ←→ Query27.2718
NC_008526:1973500Lactobacillus casei ATCC 334, complete genome81.1795 %Subject ←→ Query27.286
NC_015731:2400526*Nitrosomonas sp. Is79A3 chromosome, complete genome77.9167 %Subject ←→ Query27.4684
NC_016023:729843Bacillus coagulans 36D1 chromosome, complete genome75.6403 %Subject ←→ Query27.5069
NC_015731:169989Nitrosomonas sp. Is79A3 chromosome, complete genome75.6127 %Subject ←→ Query27.6873
NC_015634:2445396*Bacillus coagulans 2-6 chromosome, complete genome75.7782 %Subject ←→ Query27.7146
NC_015222:1749553*Nitrosomonas sp. AL212 chromosome, complete genome77.8554 %Subject ←→ Query27.7237
NC_015222:1905194*Nitrosomonas sp. AL212 chromosome, complete genome76.0815 %Subject ←→ Query27.742
NC_005140:660305Vibrio vulnificus YJ016 chromosome II, complete sequence76.0631 %Subject ←→ Query27.8453
NC_014976:2867454Bacillus subtilis BSn5 chromosome, complete genome75.1379 %Subject ←→ Query27.8605
NC_015975:789312Lactobacillus ruminis ATCC 27782 chromosome, complete genome79.614 %Subject ←→ Query27.8749
NC_013416:820989*Aggregatibacter actinomycetemcomitans D11S-1, complete genome75.0735 %Subject ←→ Query28.2199
NC_010999:2450974*Lactobacillus casei, complete genome83.2537 %Subject ←→ Query28.2344
NC_004460:81687Vibrio vulnificus CMCP6 chromosome II, complete sequence76.348 %Subject ←→ Query28.2861
NC_013199:1150000Lactobacillus rhamnosus Lc 705, complete genome81.0018 %Subject ←→ Query28.4351
NC_013895:1282566*Clostridiales genomosp. BVAB3 str. UPII9-5 chromosome, complete76.973 %Subject ←→ Query28.6033
NC_013895:1086500*Clostridiales genomosp. BVAB3 str. UPII9-5 chromosome, complete76.8719 %Subject ←→ Query28.8667
NC_008526:74500*Lactobacillus casei ATCC 334, complete genome83.6397 %Subject ←→ Query28.9383
NC_015660:3467579*Geobacillus thermoglucosidasius C56-YS93 chromosome, complete75.4473 %Subject ←→ Query28.9622
NC_015222:1607757Nitrosomonas sp. AL212 chromosome, complete genome77.6471 %Subject ←→ Query29.1095
NC_010159:2440947Yersinia pestis Angola, complete genome75.4473 %Subject ←→ Query29.2315
NC_015224:2095816*Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,75.5607 %Subject ←→ Query29.2437
NC_010999:1245239Lactobacillus casei, complete genome75.5729 %Subject ←→ Query29.2811
NC_014334:37040Lactobacillus casei str. Zhang chromosome, complete genome80.5913 %Subject ←→ Query29.347
NC_013199:2426686Lactobacillus rhamnosus Lc 705, complete genome80.8793 %Subject ←→ Query29.5122
NC_013199:1407742*Lactobacillus rhamnosus Lc 705, complete genome80.5576 %Subject ←→ Query29.5477
NC_013199:392450*Lactobacillus rhamnosus Lc 705, complete genome76.2224 %Subject ←→ Query29.6644
NC_010999:623489Lactobacillus casei, complete genome77.3836 %Subject ←→ Query29.8391
NC_005810:4224500Yersinia pestis biovar Microtus str. 91001, complete genome75.0245 %Subject ←→ Query29.8821
NC_013198:2458080Lactobacillus rhamnosus GG, complete genome81.3051 %Subject ←→ Query29.954
NC_006155:713174*Yersinia pseudotuberculosis IP 32953, complete genome75.049 %Subject ←→ Query30.0948
NC_008528:1265542*Oenococcus oeni PSU-1, complete genome75.7567 %Subject ←→ Query30.4449
NC_015975:752927*Lactobacillus ruminis ATCC 27782 chromosome, complete genome75.3922 %Subject ←→ Query30.478
NC_013199:2386924Lactobacillus rhamnosus Lc 705, complete genome81.6176 %Subject ←→ Query30.5957
NC_013198:1030970*Lactobacillus rhamnosus GG, complete genome81.6575 %Subject ←→ Query30.8386
NC_010999:561914Lactobacillus casei, complete genome77.307 %Subject ←→ Query30.939
NC_007576:1564739*Lactobacillus sakei subsp. sakei 23K, complete genome75.9896 %Subject ←→ Query31.0118
NC_015214:1458480Lactobacillus acidophilus 30SC chromosome, complete genome77.7788 %Subject ←→ Query31.0242
NC_013198:394000*Lactobacillus rhamnosus GG, complete genome80.0613 %Subject ←→ Query31.056
NC_008322:2077628*Shewanella sp. MR-7, complete genome75.3493 %Subject ←→ Query31.0943
NC_008529:1133665Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365, complete77.4295 %Subject ←→ Query31.098
NC_015428:1668465*Lactobacillus buchneri NRRL B-30929 chromosome, complete genome76.2806 %Subject ←→ Query31.3716
NC_010999:1381497*Lactobacillus casei, complete genome80.7659 %Subject ←→ Query31.3851
NC_015224:3892972*Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,75.1409 %Subject ←→ Query31.393
NC_016023:1959255Bacillus coagulans 36D1 chromosome, complete genome76.0631 %Subject ←→ Query31.4721
NC_015602:1949610Lactobacillus kefiranofaciens ZW3 chromosome, complete genome79.7243 %Subject ←→ Query31.6209
NC_006512:728281*Idiomarina loihiensis L2TR, complete genome75.9191 %Subject ←→ Query31.7437
NC_008054:1117703*Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, complete75.6863 %Subject ←→ Query31.8215
NC_010999:2155714Lactobacillus casei, complete genome79.4087 %Subject ←→ Query31.9385
NC_013199:1966334*Lactobacillus rhamnosus Lc 705, complete genome81.6238 %Subject ←→ Query31.9404
NC_007576:299266*Lactobacillus sakei subsp. sakei 23K, complete genome75.239 %Subject ←→ Query32.1055
NC_014727:889132Lactobacillus delbrueckii subsp. bulgaricus ND02 chromosome,75.7322 %Subject ←→ Query32.2258
NC_013198:1095591Lactobacillus rhamnosus GG, complete genome78.2077 %Subject ←→ Query32.5093
NC_008150:1705152*Yersinia pestis Antiqua, complete genome75.1348 %Subject ←→ Query32.6597
NC_013895:605488*Clostridiales genomosp. BVAB3 str. UPII9-5 chromosome, complete76.1458 %Subject ←→ Query32.8408
NC_008526:1924761Lactobacillus casei ATCC 334, complete genome75.4105 %Subject ←→ Query32.8703
NC_015581:1731120Thioalkalimicrobium cyclicum ALM1 chromosome, complete genome75.7996 %Subject ←→ Query33.2563
NC_014334:1954333Lactobacillus casei str. Zhang chromosome, complete genome77.4969 %Subject ←→ Query33.3293
NC_015581:680460Thioalkalimicrobium cyclicum ALM1 chromosome, complete genome75.1532 %Subject ←→ Query33.4619
NC_013198:1538792*Lactobacillus rhamnosus GG, complete genome78.0055 %Subject ←→ Query33.5442
NC_013199:2058857*Lactobacillus rhamnosus Lc 705, complete genome82.3713 %Subject ←→ Query33.7873
NC_013199:845000Lactobacillus rhamnosus Lc 705, complete genome76.2377 %Subject ←→ Query33.8589
NC_015572:1Methylomonas methanica MC09 chromosome, complete genome78.8021 %Subject ←→ Query34.0009
NC_013166:82986Kangiella koreensis DSM 16069, complete genome75.1409 %Subject ←→ Query34.1481
NC_008054:201075*Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, complete75.1134 %Subject ←→ Query34.2781
NC_015975:1056731*Lactobacillus ruminis ATCC 27782 chromosome, complete genome75.1532 %Subject ←→ Query34.5635
NC_013198:2088780*Lactobacillus rhamnosus GG, complete genome80.579 %Subject ←→ Query35.0489
NC_015634:3017564*Bacillus coagulans 2-6 chromosome, complete genome76.777 %Subject ←→ Query35.8382
NC_015634:2595500Bacillus coagulans 2-6 chromosome, complete genome76.0999 %Subject ←→ Query35.9909
NC_013961:851044*Erwinia amylovora, complete genome75.1317 %Subject ←→ Query36.5306
NC_014551:605855Bacillus amyloliquefaciens DSM 7, complete genome75.0919 %Subject ←→ Query36.6948
NC_010995:4525119Cellvibrio japonicus Ueda107, complete genome75.9528 %Subject ←→ Query36.7553
NC_010610:861194Lactobacillus fermentum IFO 3956, complete genome76.7341 %Subject ←→ Query36.7806
NC_012691:779826*Tolumonas auensis DSM 9187, complete genome76.4338 %Subject ←→ Query36.9103
NC_014010:1850500Candidatus Puniceispirillum marinum IMCC1322 chromosome, complete75.7996 %Subject ←→ Query36.9283
NC_003112:1824196Neisseria meningitidis MC58, complete genome76.3817 %Subject ←→ Query37.2375
NC_013730:2359939Spirosoma linguale DSM 74, complete genome75.2512 %Subject ←→ Query38.4788
NC_012691:2146473Tolumonas auensis DSM 9187, complete genome75.5239 %Subject ←→ Query38.7833
NC_010610:755000*Lactobacillus fermentum IFO 3956, complete genome76.2837 %Subject ←→ Query39.2062
NC_015567:1660462Serratia sp. AS9 chromosome, complete genome76.538 %Subject Query42.6158
NC_012917:3241196Pectobacterium carotovorum subsp. carotovorum PC1, complete genome75.0398 %Subject Query42.9492
NC_015214:1853106Lactobacillus acidophilus 30SC chromosome, complete genome77.3223 %Subject Query43.7956
NC_015566:1659288Serratia sp. AS12 chromosome, complete genome75.671 %Subject Query44.7005
NC_012214:2221702*Erwinia pyrifoliae Ep1/96, complete genome75.8395 %Subject Query46.3016
NC_009832:1719149Serratia proteamaculans 568, complete genome75.6863 %Subject Query48.0067