Pre_GI Gene

Some Help

Host: NC_015975 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_015975:1056731 Lactobacillus ruminis ATCC 27782 chromosome, complete genome

Host Lineage: Lactobacillus ruminis; Lactobacillus; Lactobacillaceae; Lactobacillales; Firmicutes; Bacteria

General Information: This organism was isolated from bovine rumen. They are commonly found in the oral, vaginal, and intestinal regions of many animals. They are important industrial microbes that contribute to the production of cheese, yogurt, and other products such as fermented milks, all stemming from the production of lactic acid, which inhibits the growth of other organisms as well as lowering the pH of the food product. Industrial production requires the use of starter cultures, which are carefully cultivated, created, and maintained, which produce specific end products during fermentation that impart flavor to the final product, as well as contributing important metabolic reactions, such as the breakdown of milk proteins during cheese production. The end product of fermentation, lactic acid, is also being used as a starter molecule for complex organic molecule syntheses.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
105673110610804350DNA polymerase III PolCQuickGO ontologyBLASTP
10612491062127879putative hydrolaseQuickGO ontologyBLASTP
10622001062478279hypothetical proteinBLASTP
106258610641451560transposaseQuickGO ontologyBLASTP
10642641064506243transposaseQuickGO ontologyBLASTP
10645081064708201hypothetical proteinBLASTP
10653021065622321hypothetical protein
10691011070090990CRISPR-associated protein cas1QuickGO ontologyBLASTP
10701081070596489CRISPR-associated protein Cas4QuickGO ontologyBLASTP
107062010729322313CRISPR-associated helicase Cas3QuickGO ontologyBLASTP
10729951073765771CRISPR-associated protein Cas5QuickGO ontologyBLASTP
10737521074642891crispr-associated regulatory protein devr familyQuickGO ontologyBLASTP
107466110764121752CRISPR-associated CXXC_CXXC protein Cst1QuickGO ontologyBLASTP
10764161077162747putative crispr-associated protein cas6QuickGO ontologyBLASTP
10772911077968678hypothetical proteinBLASTP
10780201078571552putative DNA endonucleaseQuickGO ontologyBLASTP
10787211078939219hypothetical proteinBLASTP
107942610806701245transposaseQuickGO ontologyBLASTP
10818081082632825DNARNA non-specific endonucleaseQuickGO ontologyBLASTP
108352410868863363DNA polymerase III subunit alphaQuickGO ontologyBLASTP
10870501087232183hypothetical protein