Pre_GI Gene

Some Help

Host: NC_006512 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_006512:728281 Idiomarina loihiensis L2TR, complete genome

Host Lineage: Idiomarina loihiensis; Idiomarina; Idiomarinaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: This is the type strain for this organism, which was isolated from a hydrothermal vent at a depth of 1300 m from the Lo'ihi Seamount southeast of Hawaii. This organism grows optimally in salt concentrations of 7.5 to 10%. Genome comparison has suggested that the bacterium has maintained its amino acid transport and degradation systems but lost sugar transport and certain sugar metabolic genes suggesting that it lives on amino acids rather than sugars. This may be in keeping with the environment this organism grows in, which is at hydrothermal deep sea vents that are characterized by collections of proteinaceous particles. This organism may colonize these particles by producing exopolysaccharides.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
7282817305512271ATP-binding subunit of Clp protease and DnaKDnaJ chaperonesQuickGO ontologyBLASTP
730579730887309ATP-dependent Clp protease adaptor protein ClpSQuickGO ontologyBLASTP
731105731320216Cold shock proteinQuickGO ontologyBLASTP
7313987324411044nucleoid-associated protein NdpAQuickGO ontologyBLASTP
7325097341431635Membrane-associated hydrolase of alkaline phosphatase superfamilyQuickGO ontologyBLASTP
73423073430374tRNA-ProQuickGO ontology
7344067355571152IntegraseQuickGO ontologyBLASTP
736168736740573hypothetical protein
736721737716996Transposon mobilization protein homologQuickGO ontology
737805737966162hypothetical protein
738142738585444Predicted secreted proteinQuickGO ontology
7390837407261644hypothetical proteinBLASTP
7412537423081056Uncharacterized protein containing Fic domainQuickGO ontologyBLASTP
742377742781405HIT family hydrolaseQuickGO ontologyBLASTP
742785743285501Alphabeta superfamily hydrolaseQuickGO ontologyBLASTP
743401744243843Uncharacterized periplasmic substrate-binding proteinQuickGO ontology
744240744623384Glutaredoxin family proteinQuickGO ontologyBLASTP
744708745691984Flavin dependant oxidoreductase putativeQuickGO ontologyBLASTP
745698746435738Short-chain alcohol dehydrogenase of unknown specificityQuickGO ontologyBLASTP
746456747082627Transcriptional regulator TetR familyQuickGO ontologyBLASTP
747103748083981asparagine synthetase AsnAQuickGO ontologyBLASTP
748234748704471Probable regulator for asnA asnC and gidA lpr familyQuickGO ontologyBLASTP
7488877515052619Secreted protein containing N-terminal Zinc-dependent carboxypeptidase related domainQuickGO ontologyBLASTP