Pre_GI: BLASTN Hits

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Query: NC_017378:1489818 Helicobacter pylori Puno120 chromosome, complete genome

Start: 1489818, End: 1513156, Length: 23339

Host Lineage: Helicobacter pylori; Helicobacter; Helicobacteraceae; Campylobacterales; Proteobacteria; Bacteria

General Information: This genus consists of organisms that colonize the mucosal layer of the gastrointestinal tract or are found enterohepatically (in the liver). It was only recently discovered (1983) by two Australians (Warren and Marshall) that this organism was associated with peptic ulcers. It is one of the most common chronic infectious organisms, and is found in half the world's population. This organism attacks the gastric epithilial surface, resulting in chronic gastritis, and can cause more severe diseases including those that lead to gastric carcinomas and lymphomas, peptic ulcers, and severe diarrhea. It is an extracellular pathogen that persists in the gastric environment, which has a very low pH, by production of the urease enzyme, which converts urea to ammonia and carbon dioxide, a process which can counteract the acidic environment by production of a base. The toxins include cytolethal distending toxin, vacuolating cytotoxin (VacA) that induces host epithelial cell apopoptosis (cell death), and the cytotoxin associated antigen (CagA) which results in alteration to the host cell signalling pathways. The CagA protein is translocated into host cells by a type IV secretion system encoded by the cag pathogenicity island.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_000915:15839671583967160577621810Helicobacter pylori 26695, complete genome03572BLASTN svgBLASTP svg
NC_011498:15718401571840159084819009Helicobacter pylori P12, complete genome03336BLASTN svgBLASTP svg
NC_005090:1921154*1921154194243121278Wolinella succinogenes DSM 1740, complete genome1e-29139BLASTN svgBLASTP svg
NC_014614:554949*55494957879923851Clostridium sticklandii, complete genome5e-20107BLASTN svgBLASTP svg
NC_014614:2500301*2500301252659926299Clostridium sticklandii, complete genome5e-20107BLASTN svgBLASTP svg
NC_012039:1399699*1399699142559925901Campylobacter lari RM2100, complete genome2e-19105BLASTN svgBLASTP svg
NC_003912:30265*302655431024046Campylobacter jejuni RM1221, complete genome8e-19103BLASTN svgBLASTP svg
NC_004545:15650*156506959953950Buchnera aphidicola str. Bp (Baizongia pistaciae), complete genome8e-19103BLASTN svgBLASTP svg
NC_012962:3864000*3864000389221428215Photorhabdus asymbiotica, complete genome1e-1799.6BLASTN svgBLASTP svg
NC_011184:2421687*2421687244877527089Vibrio fischeri MJ11 chromosome I, complete sequence1e-1799.6BLASTN svgBLASTP svg
NC_009654:615504*61550463706021557Marinomonas sp. MWYL1, complete genome1e-1799.6BLASTN svgBLASTP svg
NC_005126:4824500*4824500485430329804Photorhabdus luminescens subsp. laumondii TTO1, complete genome1e-1799.6BLASTN svgBLASTP svg
NC_003366:25548025548029721641737Clostridium perfringens str. 13, complete genome5e-1797.6BLASTN svgBLASTP svg
NC_003366:33250033250035509922600Clostridium perfringens str. 13, complete genome5e-1797.6BLASTN svgBLASTP svg
NC_008261:225425*22542525641730993Clostridium perfringens ATCC 13124, complete genome5e-1797.6BLASTN svgBLASTP svg
NC_008261:304000*30400032786723868Clostridium perfringens ATCC 13124, complete genome5e-1797.6BLASTN svgBLASTP svg
NC_008262:227354*22735427081243459Clostridium perfringens SM101, complete genome5e-1797.6BLASTN svgBLASTP svg
NC_008262:297960*29796032314425185Clostridium perfringens SM101, complete genome5e-1797.6BLASTN svgBLASTP svg
NC_003366:27882682788268280968621419Clostridium perfringens str. 13, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_008261:3014373*3014373303231317941Clostridium perfringens ATCC 13124, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_008262:2649289*2649289270467655388Clostridium perfringens SM101, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_008599:1325155*1325155134694521791Campylobacter fetus subsp. fetus 82-40, complete genome8e-1693.7BLASTN svgBLASTP svg
NC_010556:26567*265674534518779Exiguobacterium sibiricum 255-15, complete genome3e-1591.7BLASTN svgBLASTP svg
NC_009922:2590317*2590317261009919783Alkaliphilus oremlandii OhILAs, complete genome3e-1591.7BLASTN svgBLASTP svg
NC_009089:117980*11798016311645137Clostridium difficile 630, complete genome3e-1591.7BLASTN svgBLASTP svg
NC_009089:1*13459934599Clostridium difficile 630, complete genome3e-1591.7BLASTN svgBLASTP svg
NC_009053:1942973*1942973197934536373Actinobacillus pleuropneumoniae L20, complete genome3e-1591.7BLASTN svgBLASTP svg
NC_003454:63500*6350010726843769Fusobacterium nucleatum subsp. nucleatum ATCC 25586, complete3e-1591.7BLASTN svgBLASTP svg
NC_003454:249304*24930426978820485Fusobacterium nucleatum subsp. nucleatum ATCC 25586, complete3e-1591.7BLASTN svgBLASTP svg
NC_002927:383760*38376040679123032Bordetella bronchiseptica RB50, complete genome3e-1591.7BLASTN svgBLASTP svg
NC_010556:691498*69149871146719970Exiguobacterium sibiricum 255-15, complete genome3e-1591.7BLASTN svgBLASTP svg
NC_010939:1986263*1986263202856742305Actinobacillus pleuropneumoniae serovar 7 str. AP76, complete3e-1591.7BLASTN svgBLASTP svg
NC_018665:650847*65084766859917753Exiguobacterium antarcticum B7 chromosome, complete genome3e-1591.7BLASTN svgBLASTP svg
NC_015275:1*12311023110Clostridium lentocellum DSM 5427 chromosome, complete genome3e-1591.7BLASTN svgBLASTP svg
NC_015222:1905194*1905194192907923886Nitrosomonas sp. AL212 chromosome, complete genome3e-1591.7BLASTN svgBLASTP svg
NC_015185:1114180*1114180113825624077Desulfurobacterium thermolithotrophum DSM 11699 chromosome,3e-1591.7BLASTN svgBLASTP svg
NC_014721:2012751*2012751203422421474Caldicellulosiruptor kristjanssonii 177R1B chromosome, complete3e-1591.7BLASTN svgBLASTP svg
NC_013316:1*14895548955Clostridium difficile R20291, complete genome3e-1591.7BLASTN svgBLASTP svg
NC_013171:228356*22835625488926534Anaerococcus prevotii DSM 20548, complete genome3e-1591.7BLASTN svgBLASTP svg
NC_012039:257962*25796228248324522Campylobacter lari RM2100, complete genome3e-1591.7BLASTN svgBLASTP svg
NC_003997:5200805*5200805522349422690Bacillus anthracis str. Ames, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_004722:5381208*5381208540929928092Bacillus cereus ATCC 14579, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_005945:5202176*5202176522486522690Bacillus anthracis str. Sterne, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_005957:5203915*5203915522509921185Bacillus thuringiensis serovar konkukian str. 97-27, complete1e-1489.7BLASTN svgBLASTP svg
NC_006274:5267585*5267585529331825734Bacillus cereus E33L, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_007530:5197854*5197854521982221969Bacillus anthracis str. 'Ames Ancestor', complete genome1e-1489.7BLASTN svgBLASTP svg
NC_007948:4646344*4646344469438848045Polaromonas sp. JS666, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_012472:5239944*5239944525821718274Bacillus cereus 03BB102, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_015458:2614108*2614108264388729780Pusillimonas sp. T7-7 chromosome, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_004193:950000*95000096959919600Oceanobacillus iheyensis HTE831, complete genome5e-1487.7BLASTN svgBLASTP svg
NC_009802:1570215*1570215159609925885Campylobacter concisus 13826, complete genome5e-1487.7BLASTN svgBLASTP svg
NC_014802:27857*278575874230886Campylobacter jejuni subsp. jejuni ICDCCJ07001 chromosome, complete5e-1487.7BLASTN svgBLASTP svg
NC_015172:237397*23739725630718911Syntrophobotulus glycolicus DSM 8271 chromosome, complete genome5e-1487.7BLASTN svgBLASTP svg
NC_018507:339000*33900036299924000Candidatus Portiera aleyrodidarum BT-B chromosome, complete genome5e-1487.7BLASTN svgBLASTP svg
NC_018677:329829*32982935599926171Candidatus Portiera aleyrodidarum BT-B-HRs chromosome, complete5e-1487.7BLASTN svgBLASTP svg
NC_018866:2033960*2033960205592221963Dehalobacter sp. DCA chromosome, complete genome5e-1487.7BLASTN svgBLASTP svg
NC_018867:2063741*2063741208570321963Dehalobacter sp. CF chromosome, complete genome5e-1487.7BLASTN svgBLASTP svg
NC_010516:42475*424758420741733Clostridium botulinum B1 str. Okra, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_010520:35845*358457859942755Clostridium botulinum A3 str. Loch Maree, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_010674:192951*19295121941726467Clostridium botulinum B str. Eklund 17B, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_010723:173280*17328022135248073Clostridium botulinum E3 str. Alaska E43, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_012563:3580000*3580000360253222533Clostridium botulinum A2 str. Kyoto, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_012563:36000*360007859942600Clostridium botulinum A2 str. Kyoto, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_014393:139690*13969016309923410Clostridium cellulovorans 743B chromosome, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_014393:92500*9250013027937780Clostridium cellulovorans 743B chromosome, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_007645:1336227*1336227136476028534Hahella chejuensis KCTC 2396, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_008593:2457594*2457594250471047117Clostridium novyi NT, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_011146:482440*48244051159929160Geobacter bemidjiensis Bem, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_012778:2997*29972589522899Eubacterium eligens ATCC 27750, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_014376:4369666*4369666439393824273Clostridium saccharolyticum WM1 chromosome, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_014376:6296*62963008623791Clostridium saccharolyticum WM1 chromosome, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_014387:79808*7980810161621809Butyrivibrio proteoclasticus B316 chromosome 1, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_014926:295988*29598832694930962Thermovibrio ammonificans HB-1 chromosome, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_014973:4630132*4630132468542755296Geobacter sp. M18 chromosome, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_003030:249648*24964827192622279Clostridium acetobutylicum ATCC 824, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_003030:303812*30381236254758736Clostridium acetobutylicum ATCC 824, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_014328:680085*68008570448624402Clostridium ljungdahlii ATCC 49587 chromosome, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_014328:85290*8529014387558586Clostridium ljungdahlii ATCC 49587 chromosome, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_014335:5165211*5165211518430019090Bacillus cereus biovar anthracis str. CI chromosome, complete3e-1281.8BLASTN svgBLASTP svg
NC_015687:250768*25076827192421157Clostridium acetobutylicum DSM 1731 chromosome, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_015687:303810*30381036254358734Clostridium acetobutylicum DSM 1731 chromosome, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_015499:119200*11920016551846319Thermodesulfobium narugense DSM 14796 chromosome, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_014323:4792048*4792048483609944052Herbaspirillum seropedicae SmR1 chromosome, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_011567:388358*38835841678028423Anoxybacillus flavithermus WK1, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_007799:727798*72779874909921302Ehrlichia chaffeensis str. Arkansas, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_010170:4800000*48000004908823108824Bordetella petrii, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_021182:93000*9300014465551656Clostridium pasteurianum BC1, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_004547:1062410*1062410108132518916Erwinia carotovora subsp. atroseptica SCRI1043, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_004547:667988*66798869597327986Erwinia carotovora subsp. atroseptica SCRI1043, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_008254:102465*10246512336020896Mesorhizobium sp. BNC1, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_010376:606000*60600062469418695Finegoldia magna ATCC 29328, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_011567:2327870*2327870234959921730Anoxybacillus flavithermus WK1, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_012917:569856*56985658778417929Pectobacterium carotovorum subsp. carotovorum PC1, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_013421:3752619*3752619377249719879Pectobacterium wasabiae WPP163, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_014758:1387470*1387470141004622577Calditerrivibrio nitroreducens DSM 19672 chromosome, complete2e-1075.8BLASTN svgBLASTP svg
NC_014915:3039639*3039639305859918961Geobacillus sp. Y412MC52 chromosome, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_014923:2439197*2439197246272623530Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, complete2e-1075.8BLASTN svgBLASTP svg
NC_015675:2567000*2567000258988822889Mesorhizobium opportunistum WSM2075 chromosome, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_019973:2417000*2417000243959922600Mesorhizobium australicum WSM2073, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_020210:2969862*2969862300083330972Geobacillus sp. GHH01, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_012791:651480*65148067159920120Variovorax paradoxus S110 chromosome 1, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_014910:465980*46598050776541786Alicycliphilus denitrificans BC chromosome, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_014931:724102*72410275590331802Variovorax paradoxus EPS chromosome, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_015677:3787419*3787419381339525977Ramlibacter tataouinensis TTB310 chromosome, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_002163:29726*297265531925594Campylobacter jejuni subsp. jejuni NCTC 11168, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_009839:30409*304095668526277Campylobacter jejuni subsp. jejuni 81116, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_009925:4997000*4997000501875921760Acaryochloris marina MBIC11017, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_011891:17940*179404071722778Anaeromyxobacter dehalogenans 2CP-1, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_015634:3017564*3017564305008732524Bacillus coagulans 2-6 chromosome, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_015737:981712*98171299969317982Clostridium sp. SY8519, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_014221:2392150*2392150241624224093Truepera radiovictrix DSM 17093 chromosome, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_000911:1611500*1611500164476733268Synechocystis sp. PCC 6803, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_003317:1719546*1719546174739327848Brucella melitensis 16M chromosome I, complete sequence4e-0867.9BLASTN svgBLASTP svg
NC_005061:65861*658618718421324Candidatus Blochmannia floridanus, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_006932:266000*26600029059924600Brucella abortus biovar 1 str. 9-941 chromosome I, complete4e-0867.9BLASTN svgBLASTP svg
NC_007618:262415*26241528630723893Brucella melitensis biovar Abortus 2308 chromosome I, complete4e-0867.9BLASTN svgBLASTP svg
NC_010169:261473*26147328238720915Brucella suis ATCC 23445 chromosome I, complete sequence4e-0867.9BLASTN svgBLASTP svg
NC_010742:264433*26443328809923667Brucella abortus S19 chromosome 1, complete sequence4e-0867.9BLASTN svgBLASTP svg
NC_012673:1650139*1650139166872118583Exiguobacterium sp. AT1b, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_012673:2368971*2368971238860519635Exiguobacterium sp. AT1b, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_015857:265721*26572128968623966Brucella pinnipedialis B2/94 chromosome chromosome 1, complete4e-0867.9BLASTN svgBLASTP svg
NC_019940:2236630*2236630225811121482Thioflavicoccus mobilis 8321 chromosome, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_002932:296557*29655731908122525Chlorobium tepidum TLS, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_006569:69939*6993910335033412Silicibacter pomeroyi DSS-3 megaplasmid, complete sequence7e-0763.9BLASTN svgBLASTP svg
NC_007575:1694877*1694877171700722131Sulfurimonas denitrificans DSM 1251, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_008787:31999*319995922327225Campylobacter jejuni subsp. jejuni 81-176, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_009952:997950*997950102059922650Dinoroseobacter shibae DFL 12, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_011999:1633262*1633262165161518354Macrococcus caseolyticus JCSC5402, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_013889:2603914*2603914262824624333Thioalkalivibrio sp. K90mix chromosome, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_012730:131445*13144515343621992Rickettsia peacockii str. Rustic, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_009922:24874922487492251068223191Alkaliphilus oremlandii OhILAs, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_008783:222000*22200026359941600Bartonella bacilliformis KC583, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_007776:2731981*2731981275119919219Synechococcus sp. JA-2-3B'a(2-13), complete genome3e-0661.9BLASTN svgBLASTP svg