Pre_GI Gene

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Host: NC_014323 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_014323:4792048 Herbaspirillum seropedicae SmR1 chromosome, complete genome

Host Lineage: Herbaspirillum seropedicae; Herbaspirillum; Oxalobacteraceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Root-associated nitrogen-fixing bacterium. Herbaspirillum seropedicae is an endophitic nitrogen-fixing beta-Proteobacteria found associated with important crops such as sugarcane, wheat, maize, rice and sorghum. It is non-phytopathogenic and produces interesting biotechnological products such as polybetaalkanoates and cyanophycin. Herbaspirillum seropedicae was isolated from the roots of rice plants, and is member of a group of free-living soil bacteria known to promote plant growth. The yields of rice and sorghum were significantly increased when grown in soil inoculated with Herbaspirillum seropedicae.


This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
479204847943992352transcription accessory proteinQuickGO ontologyBLASTP
47946234795201579peptidyl-tRNA hydrolaseQuickGO ontologyBLASTP
47952754796042768thioldisulfide interchange proteinQuickGO ontologyBLASTP
4796234479746612332-polyprenyl-6-methoxyphenol hydroxylaseQuickGO ontologyBLASTP
4797552479762776tRNA-PheQuickGO ontology
47978394798021183hypothetical protein
479812247993961275NDP-N-acetyl-D-mannosaminuronate dehydrogenaseQuickGO ontologyBLASTP
479939648004691074UDP-galactose-4-epimeraseQuickGO ontologyBLASTP
480048548015431059dehydrogenaseQuickGO ontologyBLASTP
48015474802113567isoleucine patch superfamily acetyltransferaseQuickGO ontologyBLASTP
480211048032101101lipopolysaccharide biosynthesis proteinQuickGO ontologyBLASTP
480329748042981002NAD_dependent epimerasedehydrataseQuickGO ontologyBLASTP
480431348054791167DegTDnrJEryC1StrS aminotransferase family proteinQuickGO ontologyBLASTP
480547948073501872asparagine synthaseQuickGO ontologyBLASTP
48073984807937540acetyltransferaseQuickGO ontologyBLASTP
480788348091151233cell cycle control ATPaseQuickGO ontologyBLASTP
48091124809720609glutamine amidotransferaseQuickGO ontologyBLASTP
48097234810484762imidazoleglycerol-phosphate synthaseQuickGO ontologyBLASTP
48104814811197717hypothetical proteinBLASTP
48111904812098909UDP-3-O-3-hydroxymyristoyl glucosamine N-acyltransferaseQuickGO ontologyBLASTP
48120984812700603hypothetical protein
481270548136499453-oxoacyl-acyl-carrier-protein synthase IIIQuickGO ontologyBLASTP
48136364813863228acyl carrier proteinQuickGO ontology
481406348154631401lipopolysaccharide biosynthesis proteinQuickGO ontologyBLASTP
481558748167951209hypothetical protein
481684448187271884asparagine synthaseQuickGO ontologyBLASTP
481872448197491026hypothetical protein
48197754820752978hypothetical protein
482078848226711884asparagine synthaseQuickGO ontologyBLASTP
482269448238961203glycosyl transferaseQuickGO ontologyBLASTP
482390448251271224glycosyltransferase group 1 proteinQuickGO ontologyBLASTP
48251244825981858dTDP-4-dehydrorhamnose reductaseQuickGO ontologyBLASTP
482597448269841011galactose-1-phosphate uridylyltransferaseQuickGO ontologyBLASTP
482697748281071131UDP-N-acetylglucosamine 2-epimeraseQuickGO ontologyBLASTP
48281944828754561galactosyltransferaseQuickGO ontologyBLASTP
482880348307491947polysaccharide biosynthesis proteinQuickGO ontologyBLASTP
48308484831333486hypothetical protein
48315974832325729hypothetical protein
483251548341641650malatequinone oxidoreductaseQuickGO ontologyBLASTP
48342594834606348hypothetical protein
48346754835286612chemoreceptor glutamine deamidaseQuickGO ontologyBLASTP
48354024835557156hypothetical proteinBLASTP
48355794836058480transcription regulator proteinQuickGO ontologyBLASTP