Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014323: Herbaspirillum seropedicae SmR1 chromosome, complete genome

NCBI: NC_014323

Host Lineage: Herbaspirillum seropedicae; Herbaspirillum; Oxalobacteraceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Root-associated nitrogen-fixing bacterium. Herbaspirillum seropedicae is an endophitic nitrogen-fixing beta-Proteobacteria found associated with important crops such as sugarcane, wheat, maize, rice and sorghum. It is non-phytopathogenic and produces interesting biotechnological products such as polybetaalkanoates and cyanophycin. Herbaspirillum seropedicae was isolated from the roots of rice plants, and is member of a group of free-living soil bacteria known to promote plant growth. The yields of rice and sorghum were significantly increased when grown in soil inoculated with Herbaspirillum seropedicae.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
111610816108Island text3.1580432.832728.7295Neighbours11BLASTN+1.gbk
2273274647019144Island text1.5508621.258929.757Neighbours11BLASTN+27327.gbk
324597926763821660Island text1.6425224.677836.8148Neighbours11BLASTN+245979.gbk
429295831311820161Island text1.4816225.145932.2086Neighbours11BLASTN292958.gbk
5625155*65085125697Island text1.9122527.801931.1574Neighbours11BLASTN+625155.gbk
681602784169625670Island text1.9866329.683123.3054Neighbours11BLASTN816027.gbk
7961825*98122819404Island text1.5697622.548322.6946Neighbours11BLASTN+961825.gbk
8992978103436141384Island text1.7852824.851425.1515Neighbours1