Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014323: Herbaspirillum seropedicae SmR1 chromosome, complete genome

NCBI: NC_014323

Host Lineage: Herbaspirillum seropedicae; Herbaspirillum; Oxalobacteraceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Root-associated nitrogen-fixing bacterium. Herbaspirillum seropedicae is an endophitic nitrogen-fixing beta-Proteobacteria found associated with important crops such as sugarcane, wheat, maize, rice and sorghum. It is non-phytopathogenic and produces interesting biotechnological products such as polybetaalkanoates and cyanophycin. Herbaspirillum seropedicae was isolated from the roots of rice plants, and is member of a group of free-living soil bacteria known to promote plant growth. The yields of rice and sorghum were significantly increased when grown in soil inoculated with Herbaspirillum seropedicae.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
111610816108Island text3.1580432.832728.7295Neighbours11BLASTN+1.gbk
2273274647019144Island text1.5508621.258929.757Neighbours11BLASTN+27327.gbk
324597926763821660Island text1.6425224.677836.8148Neighbours11BLASTN+245979.gbk
429295831311820161Island text1.4816225.145932.2086Neighbours11BLASTN292958.gbk
5625155*65085125697Island text1.9122527.801931.1574Neighbours11BLASTN+625155.gbk
681602784169625670Island text1.9866329.683123.3054Neighbours11BLASTN816027.gbk
7961825*98122819404Island text1.5697622.548322.6946Neighbours11BLASTN+961825.gbk
8992978103436141384Island text1.7852824.851425.1515Neighbours11BLASTN+992978.gbk
91196209123265936451Island text1.7692424.313534.2898Neighbours11BLASTN1196209.gbk
102680085272417144087Island text1.6196527.409920.4836Neighbours11BLASTN+2680085.gbk
113195178321959924422Island text2.2679832.81331.2916Neighbours11BLASTN+3195178.gbk
123292082*331943527354Island text2.2741830.422724.333Neighbours11BLASTN+3292082.gbk
133669704*369236322660Island text1.5003323.923925.807Neighbours11BLASTN+3669704.gbk
143895376391522819853Island text1.551422.665625.6986Neighbours11BLASTN+3895376.gbk
153976351403850962159Island text2.9433.06326.5685Neighbours11BLASTN+3976351.gbk
164355266437857423309Island text1.6582729.66825.3399Neighbours11BLASTN+4355266.gbk
174619344*465241733074Island text1.9377228.718620.3103Neighbours11BLASTN4619344.gbk
184665610471710351494Island text3.036537.051230.5007Neighbours11BLASTN+4665610.gbk
194792048*483609944052Island text1.6817324.922329.3523Neighbours11BLASTN4792048.gbk
205051041507664325603Island text2.4712530.71932.0851Neighbours11BLASTN5051041.gbk
215219154524211822965Island text1.7913727.879423.7197Neighbours11BLASTN+5219154.gbk