Pre_GI Gene

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Host: NC_004547 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_004547:667988 Erwinia carotovora subsp. atroseptica SCRI1043, complete genome

Host Lineage: Pectobacterium atrosepticum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (ATCC BAA-672) is a virulent blackleg isolated from the stem of a potato plant. Causative agent for blackleg and soft rot disease in potatoes. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Both Pectobacterium chrysanthemia and Pectobacterium carotovora cause soft-rot diseases of various plant hosts through degradation of the plant cell walls. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium. Pectobacterium atrosepticum is an environmentally widespread organism that causes blackleg and soft rot disease in potatoes. This organism produces pectolytic enzymes that destroy plant tissue and allow the bacteria to spread.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
6616056679916387type I polyketide synthaseQuickGO ontologyBLASTP
6679886761298142type I polyketide synthaseQuickGO ontologyBLASTP
6761436775821440coronafacic acid synthetase ligase componentQuickGO ontologyBLASTP
677579678112534coronafacic acid synthetase componentQuickGO ontologyBLASTP
6781096792541146Cfa-beta-ketoacylsynthaseQuickGO ontologyBLASTP
679248679745498coronafacic acid dehydrataseQuickGO ontologyBLASTP
679742680017276Cfa-acyl carrier proteinQuickGO ontologyBLASTP
6801196816811563coronafacate ligaseQuickGO ontologyBLASTP
681941682903963LysR-family transcriptional regulatorQuickGO ontologyBLASTP
6833326847921461hypothetical proteinBLASTP
684912685403492hypothetical proteinBLASTP
6856966872941599hypothetical proteinBLASTP
6873806884021023putative phage integraseQuickGO ontologyBLASTP
68858468865976tRNA-PheQuickGO ontologyBLASTP
688832689677846AraC-family transcriptional regulatorQuickGO ontologyBLASTP
689713690303591hypothetical proteinBLASTP
690300690875576hypothetical proteinBLASTP
6909186926511734thioldisulfide interchange protein precursorQuickGO ontologyBLASTP
692627692962336periplasmic divalent cation tolerance proteinQuickGO ontologyBLASTP
6931116944121302anaerobic C4-dicarboxylate transporterQuickGO ontologyBLASTP
6945346959731440aspartate ammonia-lyase 2QuickGO ontologyBLASTP