Pre_GI: BLASTN Hits

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Query: NC_009480:1261961 Clavibacter michiganensis subsp. michiganensis NCPPB 382, complete

Start: 1261961, End: 1287331, Length: 25371

Host Lineage: Clavibacter michiganensis; Clavibacter; Microbacteriaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Phytopathogen that causes bacterial wilt and canker of tomato (Lycopersicon esculentum). This is considered to be the most important bacterial disease of tomato causing substantial economic losses worldwide. Bacteria enter the plant by wounds on root or stem and then find their way into the xylem allowing a massive systemic colonization. The first stage of the disease is characterized by unilateral wilting of leaves. Wilting then spreads to all leaves, canker lesions develop on the stem and the plant dies. If infection occurs at a late stage of plant development, plants can survive and yield fruit that may have spots, so called bird's eyes. Often the seeds will be infected and this has been the major source for outbreaks of Clavibacter michiganensis subsp. michiganensis infections in agriculture. Members of the Clavibacter genus are known to produce antimicrobial compounds.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_015588:19657871965787198857522789Isoptericola variabilis 225 chromosome, complete genome6e-171609BLASTN svgBLASTP svg
NC_009664:37189273718927374705528129Kineococcus radiotolerans SRS30216, complete genome1e-131478BLASTN svgBLASTP svg
NC_006087:1334500*1334500136229227793Leifsonia xyli subsp. xyli str. CTCB07, complete genome1e-119438BLASTN svgBLASTP svg
NC_019673:16566801656680168172225043Saccharothrix espanaensis DSM 44229 complete genome5e-54220BLASTN svgBLASTP svg
NC_013235:593289*59328961584722559Nakamurella multipartita DSM 44233, complete genome2e-28135BLASTN svgBLASTP svg
NC_019673:7951493*7951493797009918607Saccharothrix espanaensis DSM 44229 complete genome2e-28135BLASTN svgBLASTP svg
NC_008699:3516608*3516608354240325796Nocardioides sp. JS614, complete genome1e-27133BLASTN svgBLASTP svg
NC_014830:1871135*1871135190186430730Intrasporangium calvum DSM 43043 chromosome, complete genome2e-26129BLASTN svgBLASTP svg
NC_007164:1495804*1495804151859122788Corynebacterium jeikeium K411, complete genome2e-25125BLASTN svgBLASTP svg
NC_006361:45218204521820454440122582Nocardia farcinica IFM 10152, complete genome9e-22113BLASTN svgBLASTP svg
NC_014550:1581812*1581812167775695945Arthrobacter arilaitensis Re117, complete genome1e-20109BLASTN svgBLASTP svg
NC_015125:1136734*1136734116252925796Microbacterium testaceum StLB037, complete genome1e-20109BLASTN svgBLASTP svg
NC_013530:16492141649214168158732374Xylanimonas cellulosilytica DSM 15894, complete genome2e-19105BLASTN svgBLASTP svg
NC_006087:2214209*2214209223440320195Leifsonia xyli subsp. xyli str. CTCB07, complete genome3e-18101BLASTN svgBLASTP svg
NC_019673:74008177400817742136920553Saccharothrix espanaensis DSM 44229 complete genome5e-1797.6BLASTN svgBLASTP svg
NC_008705:34308393430839345338922551Mycobacterium sp. KMS, complete genome5e-1797.6BLASTN svgBLASTP svg
NC_008146:34017433401743342510723365Mycobacterium sp. MCS, complete genome5e-1797.6BLASTN svgBLASTP svg
NC_009077:33763513376351339892622576Mycobacterium sp. JLS, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_015635:48643494864349488758323235Microlunatus phosphovorus NM-1, complete genome8e-1693.7BLASTN svgBLASTP svg
NC_015942:763500*76350078368620187Acidithiobacillus ferrivorans SS3 chromosome, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_007963:32253063225306325338328078Chromohalobacter salexigens DSM 3043, complete genome5e-1487.7BLASTN svgBLASTP svg
NC_015565:1647554*1647554166559918046Desulfotomaculum carboxydivorans CO-1-SRB chromosome, complete2e-1385.7BLASTN svgBLASTP svg
NC_008711:1224164*1224164124601821855Arthrobacter aurescens TC1, complete genome8e-1383.8BLASTN svgBLASTP svg
NC_007164:453743*45374347209918357Corynebacterium jeikeium K411, complete genome8e-1383.8BLASTN svgBLASTP svg
NC_020133:5485528*5485528550857423047Mycobacterium liflandii 128FXT, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_013174:2455420*2455420249080635387Jonesia denitrificans DSM 20603, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_010506:2146444*2146444217391127468Shewanella woodyi ATCC 51908, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_008711:424482*42448244882424343Arthrobacter aurescens TC1, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_010125:2295500*2295500231693521436Gluconacetobacter diazotrophicus PAl 5, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_006177:3457637*3457637348146423828Symbiobacterium thermophilum IAM 14863, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_014831:65408*654088880223395Thermaerobacter marianensis DSM 12885 chromosome, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_015656:43677644367764439222424461Frankia symbiont of Datisca glomerata chromosome, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_009664:4423829*44238294686013262185Kineococcus radiotolerans SRS30216, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_006177:2943259*2943259296594222684Symbiobacterium thermophilum IAM 14863, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_014972:1510914*1510914153845127538Desulfobulbus propionicus DSM 2032 chromosome, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_013595:9994000*99940001001201918020Streptosporangium roseum DSM 43021, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_009997:3483157*3483157350342820272Shewanella baltica OS195, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_007298:1418500*1418500146207243573Dechloromonas aromatica RCB, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_008343:1548020*1548020157986331844Granulibacter bethesdensis CGDNIH1, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_009437:2367842*2367842241150043659Caldicellulosiruptor saccharolyticus DSM 8903, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_013209:23848262384826240502620201Acetobacter pasteurianus IFO 3283-01, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_014246:496976*49697651846521490Mobiluncus curtisii ATCC 43063 chromosome, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_021177:4124839*4124839415343928601Streptomyces fulvissimus DSM 40593, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_015410:1324313*1324313135087526563Pseudomonas mendocina NK-01 chromosome, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_011999:1633262*1633262165161518354Macrococcus caseolyticus JCSC5402, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_006177:280234*28023431920738974Symbiobacterium thermophilum IAM 14863, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_012673:2368971*2368971238860519635Exiguobacterium sp. AT1b, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_012673:2023297*2023297204277319477Exiguobacterium sp. AT1b, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_012673:1540000*1540000156249622497Exiguobacterium sp. AT1b, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_009725:496443*49644354991253470Bacillus amyloliquefaciens FZB42, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_004193:950000*95000096959919600Oceanobacillus iheyensis HTE831, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_004193:241480*24148026554624067Oceanobacillus iheyensis HTE831, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_003869:2143892*2143892219937255481Thermoanaerobacter tengcongensis MB4, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_013861:14982121498212151694818737Legionella longbeachae NSW150, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_014219:2931796*2931796295390522110Bacillus selenitireducens MLS10 chromosome, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_019842:484933*48493354277857846Bacillus amyloliquefaciens subsp. plantarum AS43.3 chromosome,2e-0765.9BLASTN svgBLASTP svg
NC_020410:495184*49518454162646443Bacillus amyloliquefaciens subsp. plantarum UCMB5036 complete2e-0765.9BLASTN svgBLASTP svg
NC_018704:645843*64584366848522643Amphibacillus xylanus NBRC 15112, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_018704:347948*34794837014822201Amphibacillus xylanus NBRC 15112, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_014829:178000*17800020009922100Bacillus cellulosilyticus DSM 2522 chromosome, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_014551:483773*48377350659922827Bacillus amyloliquefaciens DSM 7, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_014219:567033*56703358681719785Bacillus selenitireducens MLS10 chromosome, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_006177:835459*83545985883523377Symbiobacterium thermophilum IAM 14863, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_006511:3364448*3364448338809923652Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC8e-0763.9BLASTN svgBLASTP svg
NC_006905:2805877*2805877282870222826Salmonella enterica subsp. enterica serovar Choleraesuis str8e-0763.9BLASTN svgBLASTP svg
NC_007946:3683371*3683371370609922729Escherichia coli UTI89, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_008278:132000*13200015230120302Frankia alni ACN14a, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_008702:1094663*1094663111848823826Azoarcus sp. BH72, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_005810:3493607*3493607351772924123Yersinia pestis biovar Microtus str. 91001, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_004631:283289*28328930183618548Salmonella enterica subsp. enterica serovar Typhi Ty2, complete8e-0763.9BLASTN svgBLASTP svg
NC_004337:3590323*35903233952993362671Shigella flexneri 2a str. 301, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_000913:4159090*4159090417760618517Escherichia coli K12, complete genome8e-0763.9BLASTN svgBLASTP svg
CU928160:4248621*4248621427441825798Escherichia coli IAI1 chromosome, complete genome8e-0763.9BLASTN svgBLASTP svg
CU928160:2785792*2785792280821622425Escherichia coli IAI1 chromosome, complete genome8e-0763.9BLASTN svgBLASTP svg
CP002516:1196000*1196000121818122182Escherichia coli KO11, complete genome8e-0763.9BLASTN svgBLASTP svg
CP002185:2889656*2889656291209922444Escherichia coli W, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_009512:4287605*4287605432250934905Pseudomonas putida F1, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_009648:3192483*3192483321423721755Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_015740:2692023*2692023271734525323Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, complete8e-0763.9BLASTN svgBLASTP svg
NC_015733:1680500*1680500170310522606Pseudomonas putida S16 chromosome, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_015379:5002595*5002595502209219498Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,8e-0763.9BLASTN svgBLASTP svg
NC_014657:1540500*1540500155862118122Caldicellulosiruptor owensensis OL chromosome, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_014652:1032711*1032711107395141241Caldicellulosiruptor hydrothermalis 108 chromosome, complete8e-0763.9BLASTN svgBLASTP svg
NC_013947:49790004979000499704518046Stackebrandtia nassauensis DSM 44728 chromosome, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_013850:1198134*1198134121800019867Klebsiella variicola At-22 chromosome, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_013729:666406*66640668414717742Kribbella flavida DSM 17836, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_010102:283364*28336430624522882Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,8e-0763.9BLASTN svgBLASTP svg
NC_010468:4455201*4455201447359918399Escherichia coli ATCC 8739, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_010473:4256000*4256000427821222213Escherichia coli str. K-12 substr. DH10B, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_011080:2789744*2789744281281123068Salmonella enterica subsp. enterica serovar Newport str. SL254,8e-0763.9BLASTN svgBLASTP svg
NC_011149:2701916*2701916272409922184Salmonella enterica subsp. enterica serovar Agona str. SL483,8e-0763.9BLASTN svgBLASTP svg
NC_011750:4543135*4543135456499721863Escherichia coli IAI39 chromosome, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_006582:4256915*4256915428739230478Bacillus clausii KSM-K16, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_006582:883922*88392291459930678Bacillus clausii KSM-K16, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_007530:5197854*5197854521982221969Bacillus anthracis str. 'Ames Ancestor', complete genome3e-0661.9BLASTN svgBLASTP svg
NC_007777:39620003962000397994117942Frankia sp. CcI3, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_007880:221674*22167425368932016Francisella tularensis subsp. holarctica, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_008245:324926*32492635809933174Francisella tularensis subsp. tularensis FSC 198, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_008369:221382*22138225459933218Francisella tularensis subsp. holarctica OSU18, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_008601:246583*24658327938032798Francisella tularensis subsp. novicida U112, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_008686:405159*40515944047735319Paracoccus denitrificans PD1222 chromosome 1, complete sequence3e-0661.9BLASTN svgBLASTP svg
NC_009749:221311*22131125459933289Francisella tularensis subsp. holarctica FTA, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_006570:324974*32497435814633173Francisella tularensis subsp. tularensis Schu 4, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_006371:1997954*1997954202569227739Photobacterium profundum SS9 chromosome 2, complete sequence3e-0661.9BLASTN svgBLASTP svg
NC_006370:768745*76874579247423730Photobacterium profundum SS9 chromosome 1, complete sequence3e-0661.9BLASTN svgBLASTP svg
NC_000964:521975*52197556193339959Bacillus subtilis subsp. subtilis str. 168, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_003997:5200805*5200805522349422690Bacillus anthracis str. Ames, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_004193:375416*375416683449308034Oceanobacillus iheyensis HTE831, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_004369:22039472203947222766523719Corynebacterium efficiens YS-314, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_004722:5381208*5381208540929928092Bacillus cereus ATCC 14579, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_005945:5202176*5202176522486522690Bacillus anthracis str. Sterne, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_005957:5203915*5203915522509921185Bacillus thuringiensis serovar konkukian str. 97-27, complete3e-0661.9BLASTN svgBLASTP svg
NC_006274:5267585*5267585529331825734Bacillus cereus E33L, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_006322:4149500*4149500418760938110Bacillus licheniformis ATCC 14580, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_006322:567987*56798759617928193Bacillus licheniformis ATCC 14580, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_010677:1621500*1621500165903737538Francisella tularensis subsp. mediasiatica FSC147, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_011184:2369662*2369662239577126110Vibrio fischeri MJ11 chromosome I, complete sequence3e-0661.9BLASTN svgBLASTP svg
NC_011184:2723000*2723000274162818629Vibrio fischeri MJ11 chromosome I, complete sequence3e-0661.9BLASTN svgBLASTP svg
NC_014976:1174430*1174430119919524766Bacillus subtilis BSn5 chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_014976:2735423*2735423276136725945Bacillus subtilis BSn5 chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_015696:220798*22079825652935732Francisella sp. TX077308 chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_016047:637778*63777866096423187Bacillus subtilis subsp. spizizenii TU-B-10 chromosome, complete3e-0661.9BLASTN svgBLASTP svg
UCMB5137:276121*27612129641620296Bacillus atrophaeus UCMB-51373e-0661.9BLASTN svgBLASTP svg
NC_020210:2969862*2969862300083330972Geobacillus sp. GHH01, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_020272:3706722*3706722373604029319Bacillus amyloliquefaciens IT-45, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_020410:198000*19800022508227083Bacillus amyloliquefaciens subsp. plantarum UCMB5036 complete3e-0661.9BLASTN svgBLASTP svg
NC_006270:4149004*4149004418759938596Bacillus licheniformis ATCC 14580, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_006270:568171*56817159638928219Bacillus licheniformis ATCC 14580, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_014915:3039639*3039639305859918961Geobacillus sp. Y412MC52 chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_014479:509919*50991953986229944Bacillus subtilis subsp. spizizenii str. W23 chromosome, complete3e-0661.9BLASTN svgBLASTP svg
NC_011184:2840713*2840713285859917887Vibrio fischeri MJ11 chromosome I, complete sequence3e-0661.9BLASTN svgBLASTP svg
NC_011184:325797*32579734862422828Vibrio fischeri MJ11 chromosome I, complete sequence3e-0661.9BLASTN svgBLASTP svg
NC_011186:515214*51521454656031347Vibrio fischeri MJ11 chromosome II, complete sequence3e-0661.9BLASTN svgBLASTP svg
NC_011567:139598*13959816123721640Anoxybacillus flavithermus WK1, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_011567:204772*20477222623221461Anoxybacillus flavithermus WK1, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_011567:2327870*2327870234959921730Anoxybacillus flavithermus WK1, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_011567:388358*38835841678028423Anoxybacillus flavithermus WK1, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_012472:5239944*5239944525821718274Bacillus cereus 03BB102, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_013457:979102*97910299831619215Vibrio sp. Ex25 chromosome 2, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_014335:5165211*5165211518430019090Bacillus cereus biovar anthracis str. CI chromosome, complete3e-0661.9BLASTN svgBLASTP svg
NC_019896:3491000*3491000352473533736Bacillus subtilis subsp. subtilis str. BSP1 chromosome, complete3e-0661.9BLASTN svgBLASTP svg