Pre_GI: BLASTN Hits

Some Help

Query: NC_004631:4381724 Salmonella enterica subsp. enterica serovar Typhi Ty2, complete

Start: 4381724, End: 4403267, Length: 21544

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This pathogenic strain of Salmonella typhi was isolated in the early 1970s. It contains no multidrug resistance plasmids and has been used for vaccine development. This serovar is a human-specific organism that causes the life-threatening illness Typhoid fever which is acquired by coming into contact with contaminated food or water. Annually, 17 million people are infected, with 600,000 fatalities, mostly in developing countries. It contains multiple fimbrial operons that may be used to create extracellular appendages for attachment and entry into host intestinal epithelial cells. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_003198:4397074*4397074441861721544Salmonella enterica subsp. enterica serovar Typhi str. CT18,042200BLASTN svgBLASTP svg
NC_010102:44778364477836450325125416Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,013600BLASTN svgBLASTP svg
NC_006905:4486433*4486433450919922767Salmonella enterica subsp. enterica serovar Choleraesuis str013530BLASTN svgBLASTP svg
NC_003197:45518804551880457449822619Salmonella typhimurium LT2, complete genome013490BLASTN svgBLASTP svg
NC_011080:45430004543000457179028791Salmonella enterica subsp. enterica serovar Newport str. SL254,013340BLASTN svgBLASTP svg
NC_011149:44740124474012449847024459Salmonella enterica subsp. enterica serovar Agona str. SL483,013320BLASTN svgBLASTP svg
NC_011083:45478254547825460814560321Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,010650BLASTN svgBLASTP svg
NC_010067:3204682*3204682322388819207Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete0989BLASTN svgBLASTP svg
NC_004631:44940004494000451380819809Salmonella enterica subsp. enterica serovar Typhi Ty2, complete0948BLASTN svgBLASTP svg
NC_003198:4513900*4513900454590232003Salmonella enterica subsp. enterica serovar Typhi str. CT18,0948BLASTN svgBLASTP svg
NC_013716:37084153708415373077822364Citrobacter rodentium ICC168, complete genome0741BLASTN svgBLASTP svg
NC_012880:3982383*3982383401264230260Dickeya dadantii Ech703, complete genome5e-97363BLASTN svgBLASTP svg
NC_004547:1062410*1062410108132518916Erwinia carotovora subsp. atroseptica SCRI1043, complete genome6e-75289BLASTN svgBLASTP svg
NC_012912:4012112*4012112403907126960Dickeya zeae Ech1591, complete genome4e-73283BLASTN svgBLASTP svg
NC_014500:56486456486459190627043Dickeya dadantii 3937 chromosome, complete genome8e-65256BLASTN svgBLASTP svg
NC_013716:33278813327881336492937049Citrobacter rodentium ICC168, complete genome7e-56226BLASTN svgBLASTP svg
NC_013592:577831*57783159805520225Dickeya dadantii Ech586, complete genome1e-26129BLASTN svgBLASTP svg
NC_014121:398012*39801242358425573Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete2e-25125BLASTN svgBLASTP svg
NC_013508:275081*27508130064325563Edwardsiella tarda EIB202, complete genome3e-24121BLASTN svgBLASTP svg
NC_020211:379000*37900040159422595Serratia marcescens WW4, complete genome5e-23117BLASTN svgBLASTP svg
NC_011083:3171171*3171171319192520755Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,5e-23117BLASTN svgBLASTP svg
NC_004631:3030580*3030580304986119282Salmonella enterica subsp. enterica serovar Typhi Ty2, complete5e-23117BLASTN svgBLASTP svg
NC_003198:3042000*3042000306436622367Salmonella enterica subsp. enterica serovar Typhi str. CT18,5e-23117BLASTN svgBLASTP svg
NC_021066:3703725*3703725372609922375Raoultella ornithinolytica B6, complete genome3e-21111BLASTN svgBLASTP svg
NC_021066:4906239*4906239493059624358Raoultella ornithinolytica B6, complete genome3e-21111BLASTN svgBLASTP svg
NC_009778:259241*25924128824029000Enterobacter sakazakii ATCC BAA-894, complete genome2e-19105BLASTN svgBLASTP svg
NC_020211:4484817*4484817450328218466Serratia marcescens WW4, complete genome7e-19103BLASTN svgBLASTP svg
NC_015566:4547702*4547702457209124390Serratia sp. AS12 chromosome, complete genome7e-19103BLASTN svgBLASTP svg
NC_010694:3178842*3178842319909920258Erwinia tasmaniensis, complete genome3e-18101BLASTN svgBLASTP svg
NC_009792:4017510*4017510404823430725Citrobacter koseri ATCC BAA-895, complete genome1e-1799.6BLASTN svgBLASTP svg
NC_009832:426993*42699345559928607Serratia proteamaculans 568, complete genome1e-1799.6BLASTN svgBLASTP svg
NC_009832:4482500*4482500450993127432Serratia proteamaculans 568, complete genome1e-1799.6BLASTN svgBLASTP svg
NC_015663:18690001869000191219543196Enterobacter aerogenes KCTC 2190 chromosome, complete genome1e-1799.6BLASTN svgBLASTP svg
NC_009648:3720000*3720000374226022261Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome5e-1797.6BLASTN svgBLASTP svg
NC_009801:3374501*3374501339880324303Escherichia coli E24377A, complete genome5e-1797.6BLASTN svgBLASTP svg
NC_010465:4222586*4222586424312420539Yersinia pseudotuberculosis YPIII, complete genome5e-1797.6BLASTN svgBLASTP svg
NC_010554:28720002872000289187219873Proteus mirabilis HI4320, complete genome5e-1797.6BLASTN svgBLASTP svg
NC_020064:3998715*3998715409080492090Serratia marcescens FGI94, complete genome5e-1797.6BLASTN svgBLASTP svg
NC_020260:263528*26352829118227655Cronobacter sakazakii Sp291, complete genome5e-1797.6BLASTN svgBLASTP svg
NC_003198:3126548*3126548315161725070Salmonella enterica subsp. enterica serovar Typhi str. CT18,2e-1695.6BLASTN svgBLASTP svg
NC_004631:3112043*3112043313711225070Salmonella enterica subsp. enterica serovar Typhi Ty2, complete2e-1695.6BLASTN svgBLASTP svg
NC_006511:3079512*3079512310454825037Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC2e-1695.6BLASTN svgBLASTP svg
NC_007712:532500*53250055659924100Sodalis glossinidius str. 'morsitans', complete genome2e-1695.6BLASTN svgBLASTP svg
NC_009832:45647524564752461773352982Serratia proteamaculans 568, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_010067:4418000*4418000444281924820Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete2e-1695.6BLASTN svgBLASTP svg
NC_011149:31870223187022321200624985Salmonella enterica subsp. enterica serovar Agona str. SL483,2e-1695.6BLASTN svgBLASTP svg
NC_012880:3529017*3529017356582436808Dickeya dadantii Ech703, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_006155:3805640*3805640384073735098Yersinia pseudotuberculosis IP 32953, complete genome7e-1693.7BLASTN svgBLASTP svg
NC_006155:456000*45600047849522496Yersinia pseudotuberculosis IP 32953, complete genome7e-1693.7BLASTN svgBLASTP svg
NC_008149:3556999*3556999359064933651Yersinia pestis Nepal516, complete genome7e-1693.7BLASTN svgBLASTP svg
NC_008149:3790897*3790897381416023264Yersinia pestis Nepal516, complete genome7e-1693.7BLASTN svgBLASTP svg
NC_008253:3122148*3122148315923237085Escherichia coli 536, complete genome7e-1693.7BLASTN svgBLASTP svg
NC_005810:515744*51574453809922356Yersinia pestis biovar Microtus str. 91001, complete genome7e-1693.7BLASTN svgBLASTP svg
NC_004741:3041294*3041294310468963396Shigella flexneri 2a str. 2457T, complete genome7e-1693.7BLASTN svgBLASTP svg
NC_004431:4955658*4955658497950623849Escherichia coli CFT073, complete genome7e-1693.7BLASTN svgBLASTP svg
NC_004337:3049118*3049118311609966982Shigella flexneri 2a str. 301, complete genome7e-1693.7BLASTN svgBLASTP svg
NC_004088:3689000*3689000372277733778Yersinia pestis KIM, complete genome7e-1693.7BLASTN svgBLASTP svg
NC_003143:1059580*1059580109467535096Yersinia pestis CO92, complete genome7e-1693.7BLASTN svgBLASTP svg
CU928145:4792703*4792703481092818226Escherichia coli 55989 chromosome, complete genome7e-1693.7BLASTN svgBLASTP svg
AP010958:5090696*5090696512565934964Escherichia coli O103:H2 str. 12009 DNA, complete genome7e-1693.7BLASTN svgBLASTP svg
NC_010159:74181974181976361621798Yersinia pestis Angola, complete genome7e-1693.7BLASTN svgBLASTP svg
NC_010554:2789722*2789722282150731786Proteus mirabilis HI4320, complete genome7e-1693.7BLASTN svgBLASTP svg
NC_015663:1902344*1902344192926126918Enterobacter aerogenes KCTC 2190 chromosome, complete genome7e-1693.7BLASTN svgBLASTP svg
NC_014500:1066911*1066911109884731937Dickeya dadantii 3937 chromosome, complete genome7e-1693.7BLASTN svgBLASTP svg
NC_014306:4106569*4106569413417327605Erwinia billingiae Eb661, complete genome7e-1693.7BLASTN svgBLASTP svg
NC_014228:35053203505320352873223413Xenorhabdus nematophila ATCC 19061, complete genome7e-1693.7BLASTN svgBLASTP svg
NC_013961:3269368*3269368330269433327Erwinia amylovora, complete genome7e-1693.7BLASTN svgBLASTP svg
NC_013716:5201097*5201097527659975503Citrobacter rodentium ICC168, complete genome7e-1693.7BLASTN svgBLASTP svg
NC_013592:956829*95682998781830990Dickeya dadantii Ech586, complete genome7e-1693.7BLASTN svgBLASTP svg
NC_013282:3719500*3719500373815318654Cronobacter turicensis, complete genome7e-1693.7BLASTN svgBLASTP svg
NC_010634:3720214*3720214375380933596Yersinia pseudotuberculosis PB1/+, complete genome7e-1693.7BLASTN svgBLASTP svg
NC_011748:4792703*4792703481092818226Escherichia coli 55989, complete genome7e-1693.7BLASTN svgBLASTP svg
NC_011750:3545466*3545466356309917634Escherichia coli IAI39 chromosome, complete genome7e-1693.7BLASTN svgBLASTP svg
NC_012779:261438*26143828632424887Edwardsiella ictaluri 93-146, complete genome7e-1693.7BLASTN svgBLASTP svg
NC_012779:30596930596933285826890Edwardsiella ictaluri 93-146, complete genome7e-1693.7BLASTN svgBLASTP svg
NC_004547:667988*66798869597327986Erwinia carotovora subsp. atroseptica SCRI1043, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_015061:3840463*3840463391463974177Rahnella sp. Y9602 chromosome, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_014837:3633378*3633378366348330106Pantoea sp. At-9b chromosome, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_013421:3752619*3752619377249719879Pectobacterium wasabiae WPP163, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_012917:569856*56985658778417929Pectobacterium carotovorum subsp. carotovorum PC1, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_013956:3641368*3641368367779836431Pantoea ananatis LMG 20103 chromosome, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_013956:45500045500047503720038Pantoea ananatis LMG 20103 chromosome, complete genome4e-1177.8BLASTN svgBLASTP svg
NC_007645:1336227*1336227136476028534Hahella chejuensis KCTC 2396, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_014228:33915003391500342834536846Xenorhabdus nematophila ATCC 19061, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_013850:28460692846069288409738029Klebsiella variicola At-22 chromosome, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_010939:1986263*1986263202856742305Actinobacillus pleuropneumoniae serovar 7 str. AP76, complete4e-0867.9BLASTN svgBLASTP svg
NC_009053:1942973*1942973197934536373Actinobacillus pleuropneumoniae L20, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_003454:249304*24930426978820485Fusobacterium nucleatum subsp. nucleatum ATCC 25586, complete2e-0765.9BLASTN svgBLASTP svg
NC_005126:4824500*4824500485430329804Photorhabdus luminescens subsp. laumondii TTO1, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_011184:2421687*2421687244877527089Vibrio fischeri MJ11 chromosome I, complete sequence6e-0763.9BLASTN svgBLASTP svg
NC_012962:3864000*3864000389221428215Photorhabdus asymbiotica, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_018419:1397914*1397914141909921186Secondary endosymbiont of Ctenarytaina eucalypti chromosome,6e-0763.9BLASTN svgBLASTP svg
NC_021066:2226826*2226826225422627401Raoultella ornithinolytica B6, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_013316:1*14895548955Clostridium difficile R20291, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_013171:228356*22835625488926534Anaerococcus prevotii DSM 20548, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_009922:2590317*2590317261009919783Alkaliphilus oremlandii OhILAs, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_009089:117980*11798016311645137Clostridium difficile 630, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_009089:1*13459934599Clostridium difficile 630, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_003454:63500*6350010726843769Fusobacterium nucleatum subsp. nucleatum ATCC 25586, complete3e-0661.9BLASTN svgBLASTP svg