Pre_GI: BLASTP Hits

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Query: NC_016830:3697173:3703468 Pseudomonas fluorescens F113 chromosome, complete genome

Start: 3703468, End: 3703962, Length: 495

Host Lineage: Pseudomonas fluorescens; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This organism is a nonpathogenic saprophyte which inhabits soil, water and plant surface environments. If iron is in low supply, it produces a soluble, greenish fluorescent pigment, which is how it was named. As these environmentally versatile bacteria possess the ability to degrade (at least partially) multiple different pollutants, they are studied in their use as bioremediants. Furthermore a number of strains also posses the ability to suppress agricultural pathogens like fungal infections, hence their role as biocontrol (biological disease control) agents is under examination. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015379:3175500:318305931830593183796738Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,putative response regulator, NarL family1e-90331
NC_004129:3123000:312730831273083128099792Pseudomonas fluorescens Pf-5, complete genometranscriptional regulator, LuxR family4e-79293
NC_008027:3844355:386445738644573865245789Pseudomonas entomophila L48, complete genometranscriptional regulator, LuxR family1e-75281
NC_002947:4362271:437030543703054371102798Pseudomonas putida KT2440, complete genometranscriptional regulator, LuxR family2e-40164
NC_008027:3844355:386009638600963860908813Pseudomonas entomophila L48, complete genometranscriptional regulator, LuxR family8e-39159
NC_002947:4167500:423938642393864240285900Pseudomonas putida KT2440, complete genometranscriptional regulator, LuxR family6e-1993.2
NC_009672:30000:325033250333291789Ochrobactrum anthropi ATCC 49188 plasmid pOANT04, completeresponse regulator receiver protein3e-1787.4
NC_007761:57199:709957099571777783Rhizobium etli CFN 42, complete genomeprobable transcriptional regulator protein, LuxR family3e-0960.8
NC_010994:57362:752167521675998783Rhizobium etli CIAT 652, complete genomeprobable transcriptional regulator protein, LuxR family4e-0960.8
NC_009523:585367:6023956023956038101416Roseiflexus sp. RS-1 chromosome, complete genomeresponse regulator receiver protein3e-0858.2
NC_013501:1140390:115172711517271152362636Rhodothermus marinus DSM 4252, complete genometwo component transcriptional regulator, LuxR family3e-0857.4
NC_015968:4389871:4389871438987143925762706Enterobacter asburiae LF7a chromosome, complete genomeATP-dependent transcriptional regulator, MalT-like, LuxR family7e-0856.6
NC_008800:1300500:130498713049871305673687Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,LuxR family transcriptional regulatory protein7e-0856.6
NC_006347:700838:710349710349710945597Bacteroides fragilis YCH46, complete genomeLuxR family transcriptional regulator9e-0856.2
NC_016776:701684:713814713814714413600Bacteroides fragilis 638R, complete genomeputative LuxR family transcriptional regulator8e-0856.2
NC_010552:335989:3359893359893375331545Burkholderia ambifaria MC40-6 chromosome 2, complete sequencetranscriptional regulator, LuxR family8e-0856.2
NC_010473:498252:502403502403503035633Escherichia coli str. K-12 substr. DH10B, complete genomepredicted DNA-binding transcriptional regulator8e-0856.2
AC_000091:558920:563071563071563703633Escherichia coli W3110 DNA, complete genomepredicted DNA-binding transcriptional regulator8e-0856.2
NC_011751:643976:643976643976644608633Escherichia coli UMN026 chromosome, complete genometranscriptional regulator FimZ8e-0856.2
NC_000913:558920:563071563071563703633Escherichia coli K12, complete genomepredicted DNA-binding transcriptional regulator8e-0856.2
NC_012759:461680:465831465831466463633Escherichia coli BW2952 chromosome, complete genometranscriptional regulator FimZ8e-0856.2
NC_012947:3231893:324881132488113249443633Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completetranscriptional regulator FimZ8e-0856.2
NC_012967:531000:535962535962536594633Escherichia coli B str. REL606 chromosome, complete genometranscriptional regulator FimZ8e-0856.2
NC_011750:527470:531629531629532261633Escherichia coli IAI39 chromosome, complete genometranscriptional regulator FimZ8e-0856.2
NC_014209:1487699:150389515038951504512618Thermoanaerobacter mathranii subsp. mathranii str. A3 chromosome,two component transcriptional regulator, LuxR family8e-0856.2
NC_003228:648669:658180658180658779600Bacteroides fragilis NCTC 9343, complete genomeputative LuxR family transcriptional regulator8e-0856.2
NC_011415:600375:607365607365608012648Escherichia coli SE11 chromosome, complete genometranscriptional regulator FimZ8e-0856.2
NC_015637:819233:824159824159824977819Vibrio anguillarum 775 chromosome chromosome II, complete sequenceLysR family transcriptional regulator2e-0755.1
NC_007298:750361:757449757449758060612Dechloromonas aromatica RCB, complete genomeregulatory protein, LuxR:Response regulator receiver2e-0755.1
NC_008278:175500:1932821932821955912310Frankia alni ACN14a, complete genomeputative transcriptional regulator2e-0755.1
NC_018870:1417851:142871714287171429586870Thermacetogenium phaeum DSM 12270 chromosome, complete genometranscriptional regulator, LuxR family2e-0754.7
NC_008596:4104476:4124109412410941268412733Mycobacterium smegmatis str. MC2 155, complete genometranscriptional regulatory protein3e-0754.7
NC_006322:2658587:267722626772262677870645Bacillus licheniformis ATCC 14580, complete genomehypothetical protein3e-0754.3
NC_006270:2657726:267636626763662677010645Bacillus licheniformis ATCC 14580, complete genometwo-component response regulator3e-0754.3
NC_016609:7565483:756548375654837566118636Niastella koreensis GR20-10 chromosome, complete genometwo component transcriptional regulator, LuxR family4e-0754.3
NC_014314:1485500:1487293148729314900072715Dehalogenimonas lykanthroporepellens BL-DC-9 chromosome, completeMalT-like ATP-dependent transcriptional regulator5e-0753.9
NC_016943:3270308:331886433188643319514651Blastococcus saxobsidens DD2, complete genomeResponse regulator containing a CheY-like receiver domain and an HTH DNA-binding domain5e-0753.9
NC_016582:6811273:681717068171706817877708Streptomyces bingchenggensis BCW-1 chromosome, complete genometwo component LuxR family transcriptional regulator4e-0753.9
NC_011283:4438500:4484630448463044873952766Klebsiella pneumoniae 342 chromosome, complete genometranscriptional regulator AcoK4e-0753.9
NC_012731:1088321:1093493109349310962582766Klebsiella pneumoniae NTUH-K2044 chromosome, complete genometrans-acting regulatory protein of aco operon4e-0753.9
NC_007908:4677856:4680475468047546831592685Rhodoferax ferrireducens T118, complete genomeATP-dependent transcriptional regulator, MalT-like, LuxR family4e-0753.9
NC_017033:2758582:2759804275980427625362733Frateuria aurantia DSM 6220 chromosome, complete genomeATP-dependent transcriptional regulator4e-0753.9
NC_016628:1190366:119468511946851195527843Vibrio furnissii NCTC 11218 chromosome 2, complete sequencetranscriptional regulator, LuxR family8e-0753.1
NC_016047:2658000:265939126593912660035645Bacillus subtilis subsp. spizizenii TU-B-10 chromosome, completetwo component response regulator7e-0753.1
NC_003198:3126548:313994031399403140623684Salmonella enterica subsp. enterica serovar Typhi str. CT18,LysR-family transcriptional regulator7e-0753.1
NC_004631:3112043:312543531254353126118684Salmonella enterica subsp. enterica serovar Typhi Ty2, completeLysR-family transcriptional regulator7e-0753.1
NC_016832:3100683:311407531140753114758684Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,Monoamine regulon transcriptional regulator7e-0753.1
NC_015856:4975815:499871249987124999350639Collimonas fungivorans Ter331 chromosome, complete genometwo component LuxR family transcriptional regulator8e-0752.8
NC_011147:3075186:308858930885893089272684Salmonella enterica subsp. enterica serovar Paratyphi A strLysR family transcriptional regulator1e-0652.8
NC_006511:3079512:309291530929153093598684Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCLysR-family transcriptional regulator1e-0652.8
NC_011894:901630:921065921065921763699Methylobacterium nodulans ORS 2060, complete genometwo component transcriptional regulator, LuxR family1e-0652.4
NC_008321:2649781:265542726554272656092666Shewanella sp. MR-4, complete genometwo component transcriptional regulator, LuxR family1e-0652.4
NC_014837:3126543:314911431491143149746633Pantoea sp. At-9b chromosome, complete genomeLuxR family two component transcriptional regulator1e-0652.4
NC_008322:2716676:272338927233892724054666Shewanella sp. MR-7, complete genometwo component transcriptional regulator, LuxR family1e-0652.4
NC_011149:3187022:320031032003103201056747Salmonella enterica subsp. enterica serovar Agona str. SL483,LysR-family transcriptional regulator1e-0652.4
NC_013093:2471574:2482116248211624849862871Actinosynnema mirum DSM 43827, complete genometranscriptional regulator, LuxR family1e-0652.4
NC_015312:4658548:4661685466168546632531569Pseudonocardia dioxanivorans CB1190 chromosome, complete genomeLuxR family transcriptional regulator1e-0652.4
NC_018691:896464:906830906830907471642Alcanivorax dieselolei B5 chromosome, complete genomeTwo component transcriptional regulator, LuxR family1e-0652.4
NC_010067:632683:648920648920649564645Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein2e-0652
NC_003197:2327474:234670223467022347349648Salmonella typhimurium LT2, complete genomeresponse regulator2e-0652
NC_011083:2375061:239428223942822394929648Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,nitrate/nitrite response regulator protein NarP2e-0652
NC_010102:683444:698474698474699121648Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein2e-0652
NC_006905:2355290:236098623609862361633648Salmonella enterica subsp. enterica serovar Choleraesuis strresponse regulator in two-component regulatory system with NarQ (or NarX)2e-0652
NC_011294:2334979:234079723407972341444648Salmonella enterica subsp. enterica serovar Enteritidis strtranscriptional regulator NarP2e-0652
NC_011205:2462025:246784324678432468490648Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853transcriptional regulator NarP2e-0652
NC_011080:2342672:234847423484742349121648Salmonella enterica subsp. enterica serovar Newport str. SL254,nitrate/nitrite response regulator protein NarP2e-0652
NC_017046:2324554:234371323437132344429717Salmonella enterica subsp. enterica serovar Typhimurium str. 798nitrate/nitrite response regulator protein NarP2e-0652
NC_016857:2325190:234434923443492345065717Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74nitrate/nitrite response regulator protein NarP2e-0652
NC_012125:1517925:153298115329811533697717Salmonella enterica subsp. enterica serovar Paratyphi C straintranscriptional regulator NarP2e-0652
NC_013730:2558999:258054825805482580814267Spirosoma linguale DSM 74, complete genometranscriptional regulator, LuxR family2e-0652
NC_016810:2325190:234441823444182345065648Salmonella enterica subsp. enterica serovar Typhimurium strnitrate/nitrite response regulator protein NarP2e-0652
NC_016856:2379027:239825523982552398902648Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Stranscriptional regulator NarP2e-0652
NC_008825:2700617:270546927054692706083615Methylibium petroleiphilum PM1, complete genometwo component regulator1e-0652
NC_016831:687549:702146702146702709564Salmonella enterica subsp. enterica serovar Gallinarum/pullorumnitrate/nitrite response regulator protein NarP1e-0652
NC_015761:2227500:222939822293982230042645Salmonella bongori NCTC 12419, complete genomenitrate/nitrite response regulator protein NarP1e-0652
NC_016832:687000:700367700367701014648Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,Nitrate/nitrite response regulator protein NarP2e-0652
NC_011147:682897:697858697858698505648Salmonella enterica subsp. enterica serovar Paratyphi A strtranscriptional regulator NarP2e-0652
NC_011094:2348491:235248023524802353127648Salmonella enterica subsp. enterica serovar Schwarzengrund strtranscriptional regulator NarP2e-0652
NC_011149:2294500:229818522981852298832648Salmonella enterica subsp. enterica serovar Agona str. SL483,nitrate/nitrite response regulator protein NarP2e-0652
NC_006511:682863:697919697919698566648Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCnitrate/nitrite response regulator protein NarP2e-0652
NC_003198:2297837:230365323036532304300648Salmonella enterica subsp. enterica serovar Typhi str. CT18,nitrate/nitrite response regulator protein NarP2e-0652
NC_004631:685357:700413700413701060648Salmonella enterica subsp. enterica serovar Typhi Ty2, completenitrate/nitrite response regulator protein2e-0652
NC_016863:2324293:234644723464472347094648Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1transcriptional regulator NarP2e-0652
NC_016860:2323017:234224523422452342892648Salmonella enterica subsp. enterica serovar Typhimurium strtranscriptional regulator NarP2e-0652
CP002185:3167738:318456031845603185192633Escherichia coli W, complete genome2e-0651.6
NC_011751:3285646:330132833013283301960633Escherichia coli UMN026 chromosome, complete genomehypothetical protein2e-0651.6
NC_002695:3702344:371710237171023717734633Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein2e-0651.6
NC_011353:3805819:382149938214993822131633Escherichia coli O157:H7 str. EC4115 chromosome, complete genomeLuxR family transcriptional regulator2e-0651.6
NC_013008:3761467:377622537762253776857633Escherichia coli O157:H7 str. TW14359 chromosome, complete genome2-component transcriptional regulator2e-0651.6
CP002516:903241:920884920884921516633Escherichia coli KO11, complete genome2e-0651.6
NC_000913:2975659:299248229924822992925444Escherichia coli K12, complete genomepredicted DNA-binding transcriptional regulator2e-0651.6
NC_010473:3069529:308635230863523086795444Escherichia coli str. K-12 substr. DH10B, complete genomepredicted DNA-binding transcriptional regulator2e-0651.6
AC_000091:2976293:299311629931162993559444Escherichia coli W3110 DNA, complete genomepredicted DNA-binding transcriptional regulator2e-0651.6
NC_013353:3474077:348951534895153489958444Escherichia coli O103:H2 str. 12009, complete genome2e-0651.6
AP010958:3474077:348951534895153489958444Escherichia coli O103:H2 str. 12009 DNA, complete genome2e-0651.6
NC_016887:2269177:229490122949012295518618Nocardia cyriacigeorgica GUH-2, complete genomeresponse regulator, two-component system2e-0651.6
NC_010468:906957:925377925377926009633Escherichia coli ATCC 8739, complete genometwo component transcriptional regulator, LuxR family2e-0651.6
NC_009800:2995958:301301430130143013646633Escherichia coli HS, complete genometranscriptional regulator, LuxR family2e-0651.6
NC_013959:156991:163782163782164429648Sideroxydans lithotrophicus ES-1 chromosome, complete genometwo component transcriptional regulator, LuxR family2e-0651.6
NC_011274:2325840:233168123316812332304624Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91transcriptional regulator NarP2e-0651.6
NC_014314:238043:242796242796243539744Dehalogenimonas lykanthroporepellens BL-DC-9 chromosome, completeLuxR family two component transcriptional regulator2e-0651.6
NC_002655:3769643:378440237844023784848447Escherichia coli O157:H7 EDL933, complete genomeputative 2-component transcriptional regulator2e-0651.6
NC_013361:3867558:388299838829983883444447Escherichia coli O26:H11 str. 11368 chromosome, complete genome2e-0651.6
NC_011741:3030324:304576430457643046210447Escherichia coli IAI1 chromosome, complete genome2e-0651.6
NC_011415:3217796:323323632332363233682447Escherichia coli SE11 chromosome, complete genomehypothetical protein2e-0651.6
CU928160:3030324:304576430457643046210447Escherichia coli IAI1 chromosome, complete genomefragment of conserved hypothetical protein, putative Bacterial regulatory protein LuxR family (part 2)2e-0651.6
NC_009801:3175714:319115331911533191599447Escherichia coli E24377A, complete genometranscriptional regulator, LuxR family2e-0651.6
NC_011748:3196173:321161332116133212059447Escherichia coli 55989, complete genome2e-0651.6
CU928145:3196173:321161332116133212059447Escherichia coli 55989 chromosome, complete genomefragment of conserved hypothetical protein, putative Bacterial regulatory protein LuxR family (part 2)2e-0651.6
NC_018515:1406816:1406816140681614094732658Desulfosporosinus meridiei DSM 13257 chromosome, complete genomeATP-dependent transcriptional regulator2e-0651.6
NC_020181:1344259:135673913567391357308570Enterobacter aerogenes EA1509E, complete genomehypothetical protein3e-0651.2
NC_006155:1916426:195028319502831950912630Yersinia pseudotuberculosis IP 32953, complete genomeputative GerR-family transcriptional regulatory protein3e-0651.2
NC_010634:1916000:195026719502671950896630Yersinia pseudotuberculosis PB1/+, complete genometwo component LuxR family transcriptional regulator3e-0651.2
NC_014562:2563466:257057225705722571219648Pantoea vagans C9-1 chromosome, complete genomeNitrate/nitrite response regulator protein3e-0651.2
NC_013364:3552284:356773035677303568176447Escherichia coli O111:H- str. 11128, complete genome2e-0651.2
NC_015703:3801168:380886738088673809517651Runella slithyformis DSM 19594 chromosome, complete genomeLuxR family transcriptional regulator4e-0650.8
NC_015577:427752:450186450186450836651Treponema azotonutricium ZAS-9 chromosome, complete genomeputative LuxR family two component transcriptional regulator4e-0650.8
NC_016584:3826300:3836450383645038411504701Desulfosporosinus orientis DSM 765 chromosome, complete genomeATPase4e-0650.8
NC_009615:1446132:145086414508641451193330Parabacteroides distasonis ATCC 8503 chromosome, complete genometranscriptional regulator4e-0650.4
NC_007645:1443296:1443843144384314465512709Hahella chejuensis KCTC 2396, complete genomeATP-dependent transcriptional regulator5e-0650.4
NC_019940:2731105:273333227333322733949618Thioflavicoccus mobilis 8321 chromosome, complete genomeresponse regulator7e-0650.1
NC_009614:915605:917614917614918384771Bacteroides vulgatus ATCC 8482 chromosome, complete genometranscriptional regulator7e-0650.1
NC_014618:3482053:350087935008793501511633Enterobacter cloacae SCF1 chromosome, complete genomeLuxR family two component transcriptional regulator7e-0650.1
NC_013959:1723037:173721917372191737926708Sideroxydans lithotrophicus ES-1 chromosome, complete genometwo component transcriptional regulator, LuxR family7e-0650.1
NC_009142:2565561:258504625850462585729684Saccharopolyspora erythraea NRRL 2338, complete genomeresponse regulator, two-component system6e-0650.1
NC_013721:533048:549417549417550070654Gardnerella vaginalis 409-05, complete genometranscriptional regulator, LuxR family8e-0649.7
NC_010465:62348:941229412294712591Yersinia pseudotuberculosis YPIII, complete genometwo component transcriptional regulator, LuxR family8e-0649.7
NC_015566:3269469:328545032854503286070621Serratia sp. AS12 chromosome, complete genometwo component LuxR family transcriptional regulator9e-0649.7
NC_017353:646195:661369661369662022654Staphylococcus lugdunensis N920143, complete genomeputative response regulator1e-0549.3