Pre_GI Gene

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Host: NC_011147 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_011147:3075186 Salmonella enterica subsp. enterica serovar Paratyphi A str

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is a clinical isolate collected from a child with paratyphoid fever in Karachi, Pakistan, 2004. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.


This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
307518630762711086murein transglycosylase CQuickGO ontologyBLASTP
307648830777441257nucleoside permeaseQuickGO ontologyBLASTP
307780630799322127ornithine decarboxylaseQuickGO ontologyBLASTP
30803663081073708hypothetical proteinBLASTP
3081179308125173tRNA-PheQuickGO ontologyBLASTP
30821093082249141BLASTP
30824773082596120hypothetical proteinBLASTP
30828053082993189hypothetical proteinBLASTP
30829833083279297hypothetical proteinBLASTP
30833313083666336BLASTP
30836633083929267bacteriocin immunity proteinQuickGO ontologyBLASTP
30839933084154162BLASTP
30841723084450279bacteriocin immunity proteinQuickGO ontologyBLASTP
30848533085356504hypothetical proteinBLASTP
30856153085800186hypothetical proteinBLASTP
30859973086527531hypothetical proteinBLASTP
30865293087155627hypothetical proteinBLASTP
30872913087461171hypothetical proteinBLASTP
30876053087811207hypothetical proteinBLASTP
30878363088063228hypothetical proteinBLASTP
30885893089272684LysR family transcriptional regulatorQuickGO ontologyBLASTP
30893773089901525hypothetical proteinBLASTP
308991230914111500amino acid transport proteinQuickGO ontologyBLASTP
30916203091994375hypothetical proteinBLASTP
309200930933101302oxidoreductaseQuickGO ontologyBLASTP
309347230949561485aldehyde dehydrogenaseQuickGO ontologyBLASTP
30950923095475384DNA replicationrecombinationrepair proteinQuickGO ontologyBLASTP
30954723095957486hypothetical proteinBLASTP
30966823097605924hypothetical proteinBLASTP
30976443098522879hydrolaseQuickGO ontologyBLASTP
309891831002221305hexuronate transporterQuickGO ontologyBLASTP