Pre_GI Gene

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Host: NC_011147 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_011147:682897 Salmonella enterica subsp. enterica serovar Paratyphi A str

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is a clinical isolate collected from a child with paratyphoid fever in Karachi, Pakistan, 2004. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
6828976845401644multidrug transporter membrane proteinATP-binding proteinQuickGO ontologyBLASTP
684749685243495ecotinQuickGO ontologyBLASTP
685657686148492ferredoxin-type proteinQuickGO ontologyBLASTP
686138686401264assembly protein for periplasmic nitrate reductaseQuickGO ontologyBLASTP
6863986888842487nitrate reductase catalytic subunitQuickGO ontologyBLASTP
688891689586696quinol dehydrogenase periplasmic proteinQuickGO ontologyBLASTP
689573690442870quinol dehydrogenase membrane proteinQuickGO ontologyBLASTP
690558691007450citrate reductase cytochrome c-type subunitQuickGO ontologyBLASTP
691017691619603cytochrome c-type protein NapCQuickGO ontologyBLASTP
691640692257618cytochrome c biogenesis protein CcmAQuickGO ontologyBLASTP
692965693702738heme exporter protein C1QuickGO ontologyBLASTP
693699693911213heme exporter protein D1QuickGO ontologyBLASTP
693908694387480cytochrome c-type biogenesis protein CcmEQuickGO ontologyBLASTP
6943846963151932cytochrome c-type biogenesis protein F1QuickGO ontologyBLASTP
696312696869558thioldisulfide interchange proteinQuickGO ontologyBLASTP
697858698505648transcriptional regulator NarPQuickGO ontologyBLASTP
699211699798588hypothetical proteinBLASTP
699991700194204virulence protein MsgA-like proteinQuickGO ontologyBLASTP
7003867021461761sulfataseQuickGO ontologyBLASTP
702178702405228hypothetical proteinBLASTP
7025857035921008nucleoid-associated protein NdpAQuickGO ontologyBLASTP
703620704240621hypothetical proteinBLASTP
70434970463328550S ribosomal protein L25QuickGO ontologyBLASTP
7047587065181761helicaseQuickGO ontologyBLASTP
70667070736569616S rRNA pseudouridylate synthase AQuickGO ontologyBLASTP
7073937085831191bicyclomycinmultidrug efflux system proteinQuickGO ontologyBLASTP
70858070867899hypothetical proteinBLASTP