Pre_GI Gene

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Host: NC_004129 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_004129:3123000 Pseudomonas fluorescens Pf-5, complete genome

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
31230483123836789oxidoreductase short chain dehydrogenasereductase familyQuickGO ontologyBLASTP
312389131249911101NADHflavin oxidoreductaseNADH oxidase family proteinQuickGO ontologyBLASTP
31251413125728588transcriptional regulator TetR familyQuickGO ontologyBLASTP
31259253126320396hypothetical protein
31264023127157756hypothetical protein
31273083128099792transcriptional regulator LuxR familyQuickGO ontologyBLASTP
312825431293421089putrescine ABC transporter periplasmic putrescine-binding proteinQuickGO ontologyBLASTP
312937831306911314Rhs element Vgr proteinQuickGO ontologyBLASTP
31308153131246432hypothetical protein
31317123131990279hypothetical protein
31320543132650597hypothetical proteinBLASTP
31327003133338639hypothetical proteinBLASTP
313562831400134386hypothetical proteinBLASTP