Pre_GI: BLASTP Hits

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Query: NC_011147:4460726:4500076 Salmonella enterica subsp. enterica serovar Paratyphi A str

Start: 4500076, End: 4500606, Length: 531

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is a clinical isolate collected from a child with paratyphoid fever in Karachi, Pakistan, 2004. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012125:4716000:474863547486354749081447Salmonella enterica subsp. enterica serovar Paratyphi C straincytoplasmic protein2e-82304
NC_015761:4355335:437685843768584377388531Salmonella bongori NCTC 12419, complete genomehypothetical protein2e-79294
NC_016832:3100683:312095731209573121442486Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein3e-33140
NC_004631:3112043:313231731323173132802486Salmonella enterica subsp. enterica serovar Typhi Ty2, completehypothetical protein3e-33140
NC_003198:3126548:314682231468223147307486Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein3e-33140
NC_006511:3079512:309979830997983100283486Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCChypothetical protein9e-33139
NC_011147:3075186:309547230954723095957486Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein9e-33139
NC_011149:3187022:320725532072553207740486Salmonella enterica subsp. enterica serovar Agona str. SL483,putative cytoplasmic protein9e-32135
NC_008563:3119284:312300631230063123497492Escherichia coli APEC O1, complete genomeputative hemolysin-coregulated protein3e-0858.2
NC_005773:176885:189206189206189700495Pseudomonas syringae pv. phaseolicola 1448A, complete genomeSciM protein5e-0857.4
NC_005773:5636606:565694656569465657446501Pseudomonas syringae pv. phaseolicola 1448A, complete genomehypothetical protein2e-0755.1
NC_015381:429940:452091452091452594504Burkholderia gladioli BSR3 chromosome 1, complete sequenceputative hemolysin-coregulated protein2e-0755.1
NC_010501:3575726:359724435972443597747504Pseudomonas putida W619, complete genometype VI secretion system effector, Hcp1 family3e-0754.7
NC_008149:3556999:357602935760293576520492Yersinia pestis Nepal516, complete genomehypothetical protein4e-0754.3
NC_010465:893921:912664912664913155492Yersinia pseudotuberculosis YPIII, complete genometype VI secretion system effector, Hcp1 family4e-0754.3
NC_008150:844727:876138876138876629492Yersinia pestis Antiqua, complete genomehypothetical protein4e-0754.3
NC_010634:3720214:373921637392163739707492Yersinia pseudotuberculosis PB1/+, complete genomeHcp1 family type VI secretion system effector4e-0754.3
NC_004088:3689000:370815337081533708644492Yersinia pestis KIM, complete genomehypothetical protein4e-0754.3
NC_005810:1467772:149117914911791491670492Yersinia pestis biovar Microtus str. 91001, complete genomehemolysin-coregulated protein (uncharacterized)4e-0754.3
NC_003143:1630000:166227416622741662765492Yersinia pestis CO92, complete genomehypothetical protein4e-0754.3
NC_005810:3917254:393870739387073939198492Yersinia pestis biovar Microtus str. 91001, complete genomehemolysin-coregulated protein (uncharacterized)4e-0754.3
NC_004088:2966331:298486729848672985358492Yersinia pestis KIM, complete genomehypothetical protein4e-0754.3
NC_006155:1756000:178167217816721782163492Yersinia pseudotuberculosis IP 32953, complete genomehypothetical protein4e-0754.3
NC_003143:1059580:108004610800461080537492Yersinia pestis CO92, complete genomehypothetical protein4e-0754.3
NC_008150:317903:337604337604338095492Yersinia pestis Antiqua, complete genomehypothetical protein4e-0754.3
NC_016835:128757:136918136918137409492Rahnella aquatilis CIP 78.65 = ATCC 33071 plasmid pRahaq201,type VI secretion system effector4e-0754.3
NC_010159:3120642:314184631418463142337492Yersinia pestis Angola, complete genomehypothetical protein4e-0754.3
NC_010159:172469:181740181740182231492Yersinia pestis Angola, complete genomehypothetical protein4e-0754.3
NC_008149:2802392:282093128209312821422492Yersinia pestis Nepal516, complete genomehypothetical protein4e-0754.3
NC_010634:1755548:178190317819031782394492Yersinia pseudotuberculosis PB1/+, complete genomeHcp1 family type VI secretion system effector4e-0754.3
NC_008313:691692:696651696651697136486Ralstonia eutropha H16 chromosome 1, complete sequenceHemolysin-coregulated protein3e-0754.3
NC_017265:809943:828705828705829196492Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,hypothetical protein4e-0754.3
NC_017265:2586729:260526826052682605759492Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,hypothetical protein4e-0754.3
NC_017168:3977767:399630639963063996797492Yersinia pestis A1122 chromosome, complete genomehypothetical protein4e-0754.3
NC_017168:3286:247372473725228492Yersinia pestis A1122 chromosome, complete genomehypothetical protein4e-0754.3
NC_017160:1628500:165435116543511654842492Yersinia pestis D182038 chromosome, complete genomehypothetical protein4e-0754.3
NC_017154:902739:922440922440922931492Yersinia pestis D106004 chromosome, complete genomehypothetical protein4e-0754.3
NC_017154:1644404:167385716738571674348492Yersinia pestis D106004 chromosome, complete genomehypothetical protein4e-0754.3
NC_014029:961522:980295980295980786492Yersinia pestis Z176003 chromosome, complete genomehypothetical protein4e-0754.3
NC_006155:3805640:382613538261353826626492Yersinia pseudotuberculosis IP 32953, complete genomehypothetical protein4e-0754.3
NC_009381:1682000:170220017022001702691492Yersinia pestis Pestoides F chromosome, complete genomehypothetical protein4e-0754.3
NC_009381:588137:606893606893607384492Yersinia pestis Pestoides F chromosome, complete genomehypothetical protein4e-0754.3
NC_009708:2788855:283854128385412839032492Yersinia pseudotuberculosis IP 31758 chromosome, complete genomehypothetical protein4e-0754.3
NC_009708:874770:893523893523894014492Yersinia pseudotuberculosis IP 31758 chromosome, complete genomehypothetical protein4e-0754.3
NC_014029:1702338:173178417317841732275492Yersinia pestis Z176003 chromosome, complete genomehypothetical protein4e-0754.3
NC_007005:98488:112987112987113487501Pseudomonas syringae pv. syringae B728a, complete genomeProtein of unknown function DUF7965e-0753.9
NC_009074:3559211:355975135597513560254504Burkholderia pseudomallei 668 chromosome I, complete sequencehypothetical protein5e-0753.9
NC_006350:3710641:371064137106413711144504Burkholderia pseudomallei K96243 chromosome 1, complete sequencehypothetical protein5e-0753.9
NC_009708:915814:938848938848939339492Yersinia pseudotuberculosis IP 31758 chromosome, complete genomehypothetical protein5e-0753.9
NC_007005:2191500:220806222080622208556495Pseudomonas syringae pv. syringae B728a, complete genomeProtein of unknown function DUF7968e-0753.5
NC_012721:1395417:141887514188751419360486Burkholderia glumae BGR1 chromosome 2, complete genomeHemolysin-coregulated protein7e-0753.5
NC_014310:785220:807927807927808430504Ralstonia solanacearum PSI07 megaplasmid, complete sequencesecretion system protein (evpc-like), hemolysin-coregulated protein6e-0753.5
NC_017060:125480:127189127189127680492Rahnella aquatilis HX2 plasmid PRA1, complete sequencetype VI secretion system effector1e-0652.8
NC_015062:130359:130359130359130850492Rahnella sp. Y9602 plasmid pRAHAQ01, complete sequencetype VI secretion system effector, Hcp1 family1e-0652.8
NC_020181:969599:989229989229989720492Enterobacter aerogenes EA1509E, complete genomePutative cytoplasmic protein USSDB7A1e-0652.8
NC_007510:409843:426923426923427426504Burkholderia sp. 383 chromosome 1, complete sequenceprotein of unknown function DUF7963e-0651.6
NC_008390:407315:427925427925428428504Burkholderia cepacia AMMD chromosome 1, complete sequenceprotein of unknown function DUF7963e-0651.6
NC_014118:1171411:119129111912911191776486Burkholderia sp. CCGE1002 chromosome chromosome 2, completetype VI secretion system effector, Hcp1 family4e-0650.8
NC_014323:4619344:463245546324554632946492Herbaspirillum seropedicae SmR1 chromosome, complete genomehypothetical protein6e-0650.4
NC_016590:1183470:120668812066881207173486Burkholderia sp. YI23 chromosome 3, complete sequencehypothetical protein7e-0650.1