Pre_GI: BLASTP Hits

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Query: NC_010660:175200:178851 Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequence

Start: 178851, End: 179033, Length: 183

Host Lineage: Shigella boydii; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (strain BS512; serotype 18) was originally isolated from a 12-year-old boy in Arizona, USA by Dr. Nancy Stockbine. It is a member of Group 1 as determined by limited sequence analysis and can invade HeLa cells. Pathogenicity and virulence have been verified during in vitro experimentation, and multiple plasmids are present in this strain. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. Shigella spp. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This species is uncommon except in India, where it was first isolated. Progression to clinical dysentery occurs in most patients infected with this organism.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007385:157516:1607221607221617531032Shigella sonnei Ss046 plasmid pSS_046, complete sequenceIS630 ORF5e-29126
NC_004851:191709:195760195760196716957Shigella flexneri 2a str. 301 plasmid pCP301, complete sequenceIS630 ORF3e-28124
NC_017319:192482:195688195688196644957Shigella flexneri 2002017 plasmid pSFxv_1, complete sequenceIS630 ORF3e-28124
NC_007384:2007467:2014725201472520157561032Shigella sonnei Ss046, complete genomeIS630 ORF4e-28123
NC_007384:1737885:1748054174805417490851032Shigella sonnei Ss046, complete genomeIS630 ORF4e-28123
NC_007384:307013:3185883185883196191032Shigella sonnei Ss046, complete genomeIS630 ORF4e-28123
NC_007384:3383983:3383983338398333850141032Shigella sonnei Ss046, complete genomeIS630 ORF4e-28123
NC_016822:1818897:1827376182737618284071032Shigella sonnei 53G, complete genomeIS630 orf4e-28123
NC_016822:3282654:3298701329870132997321032Shigella sonnei 53G, complete genomeIS630 orf4e-28123
NC_016822:3485631:3497894349789434989251032Shigella sonnei 53G, complete genomeIS630 orf4e-28123
NC_007608:97092:100298100298100906609Shigella boydii Sb227 plasmid pSB4_227, complete sequenceIS630 ORF3e-26116
NC_012214:537000:5410455410455420851041Erwinia pyrifoliae Ep1/96, complete genometransposase2e-25114
NC_012214:745302:7522477522477532871041Erwinia pyrifoliae Ep1/96, complete genometransposase2e-25114
NC_013364:3701895:371511737151173715728612Escherichia coli O111:H- str. 11128, complete genome5e-24109
NC_009438:236424:2372692372692383001032Shewanella putrefaciens CN-32 chromosome, complete genomeIS630 orf5e-23106
NC_009786:43331:592285922860046819Escherichia coli E24377A plasmid pETEC_80, complete sequence6e-23106
NC_016816:2684336:270954227095422710033492Pantoea ananatis LMG 5342, complete genomeIS630 family transposase8e-23105
NC_012779:2856051:286125928612592862020762Edwardsiella ictaluri 93-146, complete genomehypothetical protein2e-22104
NC_012779:2424967:243549724354972436486990Edwardsiella ictaluri 93-146, complete genomehypothetical protein1e-21102
NC_002655:2264773:227403322740332274284252Escherichia coli O157:H7 EDL933, complete genomeputative transposase (partial)7e-2095.9
NC_013956:3181421:318898531889853189218234Pantoea ananatis LMG 20103 chromosome, complete genomehypothetical protein1e-1995.1
NC_002695:3852233:386576138657613866549789Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein1e-1994.7
NC_013353:5090696:510537051053705106215846Escherichia coli O103:H2 str. 12009, complete genome2e-1994.7
NC_013353:3627355:364082536408253641670846Escherichia coli O103:H2 str. 12009, complete genome2e-1994.7
NC_013008:3911356:392482739248273925672846Escherichia coli O157:H7 str. TW14359 chromosome, complete genometransposase2e-1994.7
NC_011353:3956630:397010139701013970946846Escherichia coli O157:H7 str. EC4115 chromosome, complete genome2e-1994.7
NC_002655:3919545:393301739330173933862846Escherichia coli O157:H7 EDL933, complete genomeputative transposase2e-1994.7
AP010958:5090696:510537051053705106215846Escherichia coli O103:H2 str. 12009 DNA, complete genome2e-1994.7
AP010958:3627355:364082536408253641670846Escherichia coli O103:H2 str. 12009 DNA, complete genome2e-1994.7
NC_013364:5083949:509798450979845098829846Escherichia coli O111:H- str. 11128, complete genome2e-1890.9
NC_005126:5188976:5188976518897651899891014Photorhabdus luminescens subsp. laumondii TTO1, complete genomeTransposase, IS630 family6e-1889.4
NC_013941:3676146:368999936899993690463465Escherichia coli O55:H7 str. CB9615 chromosome, complete genometransposase1e-1788.6
NC_012691:2050957:2054975205497520559941020Tolumonas auensis DSM 9187, complete genometransposase, putative2e-1788.2
NC_012691:1144715:1153221115322111542401020Tolumonas auensis DSM 9187, complete genometransposase, putative2e-1788.2
NC_009348:2631759:2642233264223326432641032Aeromonas salmonicida subsp. salmonicida A449, complete genomeIS630 family transposase6e-1786.3
NC_009348:2034500:2045224204522420462551032Aeromonas salmonicida subsp. salmonicida A449, complete genomeIS630 family transposase6e-1786.3
NC_009348:3261500:3270842327084232718731032Aeromonas salmonicida subsp. salmonicida A449, complete genomeIS630 family transposase6e-1786.3
NC_009348:3261500:3268688326868832697191032Aeromonas salmonicida subsp. salmonicida A449, complete genomeIS630 family transposase6e-1786.3
NC_009348:4135002:4157632415763241586631032Aeromonas salmonicida subsp. salmonicida A449, complete genomeIS630 family transposase6e-1786.3
NC_009348:2362163:2381760238176023827911032Aeromonas salmonicida subsp. salmonicida A449, complete genomeIS630 family transposase6e-1786.3
NC_009348:1475955:1480996148099614820271032Aeromonas salmonicida subsp. salmonicida A449, complete genomeIS630 family transposase6e-1786.3
NC_009348:161244:1691281691281701591032Aeromonas salmonicida subsp. salmonicida A449, complete genomeIS630 family transposase6e-1786.3
NC_009348:1968826:1977019197701919780501032Aeromonas salmonicida subsp. salmonicida A449, complete genomeIS630 family transposase5e-1786.3
NC_009348:3819271:3831763383176338327941032Aeromonas salmonicida subsp. salmonicida A449, complete genomeIS630 family transposase5e-1786.3
NC_009348:1663870:1679917167991716809481032Aeromonas salmonicida subsp. salmonicida A449, complete genomeIS630 family transposase5e-1786.3
NC_009348:2247500:2274776227477622758071032Aeromonas salmonicida subsp. salmonicida A449, complete genomeIS630 family transposase5e-1786.3
NC_009350:6987:96149614106451032Aeromonas salmonicida subsp. salmonicida A449 plasmid 5, completeIS630 family transposase1e-1684.7
NC_009348:1347500:1354117135411713551481032Aeromonas salmonicida subsp. salmonicida A449, complete genomeIS630 family transposase2e-1684.3
NC_013421:2613137:262804226280422628872831Pectobacterium wasabiae WPP163, complete genome6e-1682.8
NC_009708:915814:924763924763925350588Yersinia pseudotuberculosis IP 31758 chromosome, complete genomeIS630 family transposase2e-1581.3
NC_008150:844727:889085889085889405321Yersinia pestis Antiqua, complete genomeputative transposase2e-1580.9
NC_004088:2966331:297209429720942972414321Yersinia pestis KIM, complete genometransposase2e-1580.9
NC_008149:2802392:280815528081552808475321Yersinia pestis Nepal516, complete genometransposase2e-1580.9
NC_005810:1467772:150412615041261504446321Yersinia pestis biovar Microtus str. 91001, complete genomeputative transposase2e-1580.9
NC_009381:1682000:168942416894241689744321Yersinia pestis Pestoides F chromosome, complete genometransposase2e-1580.9
NC_017168:3977767:398353039835303983850321Yersinia pestis A1122 chromosome, complete genometransposase2e-1580.9
NC_017265:2586729:259249225924922592812321Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,transposase2e-1580.9
NC_003277:22257:3292932929339661038Salmonella typhimurium LT2 plasmid pSLT, complete sequenceputative integrase protein1e-1478.6
NC_016861:22256:3292232922339591038Salmonella enterica subsp. enterica serovar Typhimurium strputative integrase1e-1478.6
NC_016745:1719800:1728949172894917299801032Oceanimonas sp. GK1 chromosome, complete genomeIS630 family transposase1e-1478.6
NC_016745:2280375:2291970229197022930011032Oceanimonas sp. GK1 chromosome, complete genomeIS630 family transposase1e-1478.6
NC_012779:2424967:244847224484722448741270Edwardsiella ictaluri 93-146, complete genomehypothetical protein2e-1271.2
NC_012779:2424967:243273824327382433289552Edwardsiella ictaluri 93-146, complete genomehypothetical protein2e-1270.9
NC_011353:1716037:173448417344841734678195Escherichia coli O157:H7 str. EC4115 chromosome, complete genome2e-1064.7
NC_013361:1754346:177201017720101772204195Escherichia coli O26:H11 str. 11368 chromosome, complete genome2e-1064.7
NC_013364:1997891:200499220049922005186195Escherichia coli O111:H- str. 11128, complete genome2e-1064.7
NC_004347:4441110:445477544547754455032258Shewanella oneidensis MR-1, complete genomehypothetical protein3e-1063.9
NC_015663:3466471:347540834754083475536129Enterobacter aerogenes KCTC 2190 chromosome, complete genomeIS630 orf1e-0961.6
NC_012779:3570720:357882835788283579379552Edwardsiella ictaluri 93-146, complete genomehypothetical protein9e-0958.9
NC_014228:3353896:337260933726093372848240Xenorhabdus nematophila ATCC 19061, complete genomehypothetical protein1e-0858.5
NC_010102:4745949:474832947483294748829501Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein4e-0857
NC_016831:4517850:452384745238474524347501Salmonella enterica subsp. enterica serovar Gallinarum/pullorumhypothetical protein1e-0755.1
NC_011205:4718239:472403647240364724536501Salmonella enterica subsp. enterica serovar Dublin str. CT_020218531e-0755.1