Pre_GI: BLASTP Hits

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Query: NC_008525:561000:580635 Pediococcus pentosaceus ATCC 25745, complete genome

Start: 580635, End: 580994, Length: 360

Host Lineage: Pediococcus pentosaceus; Pediococcus; Lactobacillaceae; Lactobacillales; Firmicutes; Bacteria

General Information: Use in fermentation of food products. A distinctive characteristic of pediococci is their ability to form tetrads via cell division in two perpendicular directions in a single plane. Like other lactic acid bacteria, species of Pediococcus are acid tolerant, cannot synthesize porphyrins, and possess a strictly fermentative (homofermentative) facultatively anaerobic metabolism with lactic acid as the major metabolic end product. They also occur in such food products as cured meat, raw sausages, and marinated fish, and are are used for biotechnological processing and preservation of foods. This bacterium can be isolated from a variety of plant materials and bacterial-ripened cheeses. This organism is used as an acid producing starter culture in the fermentation of some sausages, cucumbers, green beans, soy milk, and silage. Some strains have been reported to contain several (3-5) resident plasmids that render the bacterium capable of fermenting some sugars (raffinose, melibiose, and sucrose), as well as producing bacteriocins.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014972:137184:144197144197144676480Desulfobulbus propionicus DSM 2032 chromosome, complete genomeDNA repair protein RadC3e-0960.8
NC_005139:2201820:227281922728192273373555Vibrio vulnificus YJ016 chromosome I, complete sequenceDNA repair protein1e-0858.9
NC_018697:1343756:137469913746991375190492Cycloclasticus sp. P1 chromosome, complete genomedna repair radc-like protein1e-0858.2
NC_021175:964224:968398968398969081684Streptococcus oligofermentans AS 1.3089, complete genomehypothetical protein2e-0858.2
NC_015379:2417312:243697224369722437463492Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,putative DNA repair protein2e-0857.4
NC_007508:3865000:389168138916813892244564Xanthomonas campestris pv. vesicatoria str. 85-10, complete genomeRadC family DNA repair protein5e-0856.6
NC_010688:1192410:121789312178931218372480Xanthomonas campestris pv. campestris, complete genomeDNA repair protein radC homolog5e-0856.6
NC_014614:2643203:265763126576312658110480Clostridium sticklandii, complete genomehypothetical protein6e-0856.2
NC_018691:3041851:305065230506523051161510Alcanivorax dieselolei B5 chromosome, complete genomeRadC-like protein6e-0856.2
NC_007086:3118116:315164631516463152125480Xanthomonas campestris pv. campestris str. 8004, complete genomeRadC family protein8e-0855.8
NC_003902:1858349:188770318877031888182480Xanthomonas campestris pv. campestris str. ATCC 33913, completeRadC family protein8e-0855.8
NC_014657:473479:479531479531480223693Caldicellulosiruptor owensensis OL chromosome, complete genomeDNA repair protein radc8e-0855.8
NC_009138:668000:686433686433686960528Herminiimonas arsenicoxydans, complete genomeputative DNA repair protein; putative CP4-6 prophage7e-0855.8
NC_016010:1822212:183260918326091833169561Xanthomonas axonopodis pv. citrumelo F1 chromosome, completeRadC family DNA repair protein1e-0755.5
NC_011661:906583:907417907417908103687Dictyoglomus turgidum DSM 6724, complete genomeDNA repair protein RadC1e-0755.5
NC_002505:1931750:193612119361211936597477Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, completeDNA repair protein RadC, putative1e-0755.1
NC_009457:1444449:148922414892241489700477Vibrio cholerae O395 chromosome 2, complete sequenceDNA repair protein RadC1e-0755.1
NC_012578:1838470:188325418832541883730477Vibrio cholerae M66-2 chromosome I, complete sequenceputative DNA repair protein RadC1e-0755.1
NC_012582:2013515:202064320206432021119477Vibrio cholerae O395 chromosome chromosome I, complete sequenceputative DNA repair protein RadC1e-0755.1
NC_012668:1688500:171091017109101711386477Vibrio cholerae MJ-1236 chromosome 1, complete sequenceDNA repair protein RadC1e-0755.1
NC_016445:1363831:140752214075221407998477Vibrio cholerae O1 str. 2010EL-1786 chromosome 1, completeDNA repair protein RadC1e-0755.1
NC_016944:1978058:198242919824291982905477Vibrio cholerae IEC224 chromosome I, complete sequenceDNA repair protein RadC1e-0755.1
NC_003919:3812778:385070738507073851270564Xanthomonas axonopodis pv. citri str. 306, complete genomeRadC family protein2e-0754.7
NC_016602:173314:183739183739184212474Vibrio furnissii NCTC 11218 chromosome 1, complete sequenceDNA repair protein RadC-related protein2e-0754.7
NC_010516:3234791:325519432551943255880687Clostridium botulinum B1 str. Okra, complete genomeDNA repair protein, RadC family2e-0754.7
NC_012563:3416509:343368934336893434375687Clostridium botulinum A2 str. Kyoto, complete genomeDNA repair protein, RadC family2e-0754.7
NC_003295:2787371:282272928227292823238510Ralstonia solanacearum GMI1000, complete genomehypothetical protein2e-0754.7
NC_014632:567289:581151581151581828678Ilyobacter polytropus DSM 2926 chromosome, complete genomeDNA repair protein RadC2e-0754.3
NC_012668:62500:803358033580808474Vibrio cholerae MJ-1236 chromosome 1, complete sequenceDNA repair protein RadC2e-0754.3
NC_002505:514732:539531539531540004474Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, completeDNA repair protein RadC-related protein2e-0754.3
NC_009659:1050532:111069711106971111269573Janthinobacterium sp. Marseille chromosome, complete genomeDNA repair protein RadC2e-0754.3
NC_020541:2769419:278112927811292781614486Rhodanobacter sp. 2APBS1, complete genomeDNA repair protein3e-0753.9
NC_016944:514742:539538539538540011474Vibrio cholerae IEC224 chromosome I, complete sequenceDNA repair protein RadC-likeprotein3e-0753.9
NC_016816:1137904:114958211495821150124543Pantoea ananatis LMG 5342, complete genomeDNA repair protein RadC3e-0753.9
NC_011415:308825:326714326714327256543Escherichia coli SE11 chromosome, complete genomehypothetical protein3e-0753.9
NC_013421:4790696:481221948122194812884666Pectobacterium wasabiae WPP163, complete genomeDNA repair protein RadC3e-0753.9
NC_006511:3690828:371133937113393712004666Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCDNA repair protein RadC4e-0753.5
NC_011147:3686500:370700937070093707674666Salmonella enterica subsp. enterica serovar Paratyphi A strDNA repair protein RadC4e-0753.5
NC_009699:3217315:323771832377183238404687Clostridium botulinum F str. Langeland chromosome, complete genomeDNA repair protein RadC4e-0753.5
NC_016612:443398:455833455833456279447Klebsiella oxytoca KCTC 1686 chromosome, complete genomeputative DNA repair protein4e-0753.5
NC_004547:639726:653073653073653486414Erwinia carotovora subsp. atroseptica SCRI1043, complete genomeputative DNA repair protein3e-0753.5
NC_011283:105245:121974121974122639666Klebsiella pneumoniae 342 chromosome, complete genomeDNA repair protein RadC6e-0753.1
NC_013850:109500:127170127170127835666Klebsiella variicola At-22 chromosome, complete genomeDNA repair protein RadC5e-0753.1
NC_009092:1441813:145395314539531454426474Shewanella loihica PV-4, complete genomeDNA repair protein RadC5e-0753.1
NC_005139:796546:812421812421812918498Vibrio vulnificus YJ016 chromosome I, complete sequenceDNA repair protein5e-0753.1
NC_007645:6500059:651200365120036512626624Hahella chejuensis KCTC 2396, complete genomeDNA repair protein5e-0753.1
NC_015556:2265940:229892422989242299430507Pseudomonas fulva 12-X chromosome, complete genomeDNA repair protein RadC5e-0753.1
NC_014121:3776902:379222937922293792705477Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completeputative DNA repair protein4e-0753.1
NC_020260:882307:893960893960894436477Cronobacter sakazakii Sp291, complete genomeputative DNA repair protein4e-0753.1
NC_009792:4658909:467717646771764677838663Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein7e-0752.8
NC_009648:4359875:435987543598754360540666Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomeDNA repair protein RadC7e-0752.8
NC_012731:5074000:507405450740545074719666Klebsiella pneumoniae NTUH-K2044 chromosome, complete genomeDNA repair protein RadC7e-0752.8
NC_016845:5162481:516293451629345163599666Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,DNA repair protein RadC7e-0752.8
NC_011662:1017933:103697410369741037468495Thauera sp. MZ1T, complete genomeDNA repair protein RadC6e-0752.8
NC_020181:5130513:513296651329665133445480Enterobacter aerogenes EA1509E, complete genomeDNA repair protein RadC6e-0752.8
NC_012917:3241196:326596532659653266438474Pectobacterium carotovorum subsp. carotovorum PC1, complete genomeDNA repair protein RadC6e-0752.8
NC_004547:164000:166978166978167643666Erwinia carotovora subsp. atroseptica SCRI1043, complete genomeDNA repair protein RadC6e-0752.8
NC_011080:3875320:389583138958313896496666Salmonella enterica subsp. enterica serovar Newport str. SL254,DNA repair protein RadC1e-0652.4
NC_010554:2646806:266867826686782669175498Proteus mirabilis HI4320, complete genomeplasmid-related DNA repair protein9e-0752.4
NC_009439:1297851:133081213308121331309498Pseudomonas mendocina ymp, complete genomeDNA repair protein RadC8e-0752.4
NC_011149:3822000:384204738420473842712666Salmonella enterica subsp. enterica serovar Agona str. SL483,DNA repair protein RadC1e-0652
NC_004631:3910451:391045139104513911116666Salmonella enterica subsp. enterica serovar Typhi Ty2, completeDNA repair protein RadC1e-0652
NC_003198:3924952:392495239249523925617666Salmonella enterica subsp. enterica serovar Typhi str. CT18,DNA repair protein RadC1e-0652
NC_003197:3902500:392268039226803923345666Salmonella typhimurium LT2, complete genomeDNA repair protein RadC1e-0652
NC_011083:3915500:393569039356903936355666Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,DNA repair protein RadC1e-0652
NC_006905:3845000:386498038649803865645666Salmonella enterica subsp. enterica serovar Choleraesuis strDNA repair protein RadC1e-0652
NC_012759:2633949:266022026602202660702483Escherichia coli BW2952 chromosome, complete genomeCP4-57 prophage; putative DNA repair protein1e-0652
NC_010473:2839902:286617328661732866655483Escherichia coli str. K-12 substr. DH10B, complete genomeCP4-57 prophage; predicted DNA repair protein1e-0652
AC_000091:2747520:277504227750422775524483Escherichia coli W3110 DNA, complete genomepredicted DNA repair protein1e-0652
NC_000913:2746886:277440827744082774890483Escherichia coli K12, complete genomeCP4-57 prophage; predicted DNA repair protein1e-0652
NC_011094:3778000:379876637987663799431666Salmonella enterica subsp. enterica serovar Schwarzengrund strDNA repair protein RadC1e-0652
NC_011205:3942500:396238139623813963046666Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853DNA repair protein RadC1e-0652
NC_017046:3923000:394282139428213943486666Salmonella enterica subsp. enterica serovar Typhimurium str. 798DNA repair protein1e-0652
NC_016863:3864000:388397938839793884644666Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1DNA repair protein RadC1e-0652
NC_016860:3925500:394557639455763946241666Salmonella enterica subsp. enterica serovar Typhimurium strDNA repair protein RadC1e-0652
NC_016857:3924000:394399539439953944660666Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74DNA repair protein RadC1e-0652
NC_016856:3916500:393637239363723937211840Salmonella enterica subsp. enterica serovar Typhimurium str. 14028SDNA repair protein RadC1e-0652
NC_016831:3875134:387513438751343875799666Salmonella enterica subsp. enterica serovar Gallinarum/pullorumputative DNA repair protein1e-0652
NC_016810:3923988:394399439439943944659666Salmonella enterica subsp. enterica serovar Typhimurium strputative DNA repair protein1e-0652
NC_012125:3840000:385983538598353860500666Salmonella enterica subsp. enterica serovar Paratyphi C strainDNA repair protein RadC1e-0652
NC_011294:3782655:380378438037843804449666Salmonella enterica subsp. enterica serovar Enteritidis strDNA repair protein RadC1e-0652
NC_011274:3894387:389438738943873895052666Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91DNA repair protein RadC1e-0652
NC_016612:2009927:204496120449612045437477Klebsiella oxytoca KCTC 1686 chromosome, complete genomeDNA repair protein RadC2e-0651.6
NC_015554:4648919:466813646681364668630495Alteromonas sp. SN2 chromosome, complete genomeDNA repair protein RadC1e-0651.6
NC_015761:3611993:363251936325193633184666Salmonella bongori NCTC 12419, complete genomeDNA repair protein1e-0651.6
NC_015410:3093465:314020931402093140715507Pseudomonas mendocina NK-01 chromosome, complete genomeDNA repair protein RadC2e-0651.2
NC_018691:2254566:226910022691002269576477Alcanivorax dieselolei B5 chromosome, complete genomeRadC-like protein2e-0651.2
NC_020064:3609844:363411436341143634656543Serratia marcescens FGI94, complete genomeDNA repair protein radc2e-0651.2
NC_010102:3851500:387162738716273872466840Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein2e-0651.2
NC_011283:4966471:498446149844614984946486Klebsiella pneumoniae 342 chromosome, complete genomeDNA repair protein RadC2e-0651.2
NC_012913:2189862:219326621932662193925660Aggregatibacter aphrophilus NJ8700, complete genomeDNA repair protein RadC2e-0650.8
NC_015379:908904:956123956123956620498Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,Putative DNA repair protein2e-0650.8
NC_014328:794000:800328800328801020693Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeDNA repair protein, RadC family3e-0650.8
NC_011663:2813033:281442128144212814903483Shewanella baltica OS223 chromosome, complete genomeDNA repair protein RadC3e-0650.8
NC_010688:3515885:355014635501463550625480Xanthomonas campestris pv. campestris, complete genomeDNA repair protein radC homolog4e-0650.4
NC_014618:4114004:412018641201864120668483Enterobacter cloacae SCF1 chromosome, complete genomeDNA repair protein RadC4e-0650.4
NC_015663:1:325263252633002477Enterobacter aerogenes KCTC 2190 chromosome, complete genomeDNA repair protein RadC3e-0650.4
NC_014618:690056:723251723251723733483Enterobacter cloacae SCF1 chromosome, complete genomeDNA repair protein RadC3e-0650.4
AP010958:5272863:528877552887755289317543Escherichia coli O103:H2 str. 12009 DNA, complete genomepredicted DNA repair protein3e-0650.4
NC_013353:5272863:528877552887755289317543Escherichia coli O103:H2 str. 12009, complete genomeDNA repair protein3e-0650.4
NC_016816:127802:146407146407147063657Pantoea ananatis LMG 5342, complete genomeDNA repair protein RadC3e-0650.4
NC_013416:386301:399197399197399856660Aggregatibacter actinomycetemcomitans D11S-1, complete genomeDNA repair protein RadC5e-0650.1
NC_008253:334467:357452357452357928477Escherichia coli 536, complete genomeRadC-like DNA repair protein5e-0650.1
NC_013716:5201097:522212152221215222612492Citrobacter rodentium ICC168, complete genomeputative DNA repair protein5e-0650.1
NC_011745:3405520:342371334237133424159447Escherichia coli ED1a chromosome, complete genomeputative DNA repair protein; CP4-44 prophage5e-0650.1
NC_011745:5114500:511586651158665116357492Escherichia coli ED1a chromosome, complete genomeputative DNA repair protein; CP4-44 prophage5e-0650.1
NC_016513:689689:702586702586703230645Aggregatibacter actinomycetemcomitans ANH9381 chromosome, completeDNA repair protein RadC4e-0650.1
NC_004337:3049118:309581130958113096302492Shigella flexneri 2a str. 301, complete genomeputative RADC family DNA repair protein,4e-0650.1
NC_004741:3041294:308663830866383087129492Shigella flexneri 2a str. 2457T, complete genomeputative RADC family DNA repair protein,4e-0650.1
NC_017328:3088907:313551631355163136007492Shigella flexneri 2002017 chromosome, complete genomeputative RADC family DNA repair protein4e-0650.1
NC_011083:4547825:456697345669734567449477Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,DNA repair protein, RadC family4e-0650.1
NC_012793:3096095:312952731295273130036510Geobacillus sp. WCH70, complete genomeDNA repair protein RadC4e-0650.1
NC_008253:3161311:317346031734603173936477Escherichia coli 536, complete genomeputative radC-like protein YeeS4e-0650.1
NC_009348:2247500:225712522571252257616492Aeromonas salmonicida subsp. salmonicida A449, complete genomeRadC family DNA repair protein4e-0650.1
NC_007946:4875997:489402248940224894498477Escherichia coli UTI89, complete genomehypothetical protein6e-0649.7
NC_008253:4817864:483452048345204834996477Escherichia coli 536, complete genomeputative DNA repair protein6e-0649.7
NC_012440:1405879:140633514063351407024690Persephonella marina EX-H1, complete genomeDNA repair protein RadC6e-0649.7
NC_018867:10238:3771937719395181800Dehalobacter sp. CF chromosome, complete genomeDNA repair protein RadC6e-0649.7
NC_015663:549425:562961562961563440480Enterobacter aerogenes KCTC 2190 chromosome, complete genomeDNA repair protein RadC6e-0649.7
NC_010694:63654:852328523285903672Erwinia tasmaniensis, complete genomeDNA repair protein RadC6e-0649.7
NC_015663:1356982:137787813778781378348471Enterobacter aerogenes KCTC 2190 chromosome, complete genomehypothetical protein5e-0649.7
NC_008563:4707826:470946747094674709943477Escherichia coli APEC O1, complete genomeputative radC-like protein YeeS5e-0649.7
NC_013421:701005:730220730220730696477Pectobacterium wasabiae WPP163, complete genomeDNA repair protein RadC5e-0649.7
NC_013361:5580741:558074155807415581217477Escherichia coli O26:H11 str. 11368 chromosome, complete genomeDNA repair protein5e-0649.7
NC_009801:4882684:488433348843334884809477Escherichia coli E24377A, complete genomeDNA repair protein, RadC family5e-0649.7
NC_007946:1119000:113847911384791138955477Escherichia coli UTI89, complete genomeputative radC-like protein YeeS5e-0649.7
NC_014394:993465:101064810106481011265618Gallionella capsiferriformans ES-2 chromosome, complete genomeDNA repair protein RadC5e-0649.7
NC_013961:73037:102651102651103322672Erwinia amylovora, complete genomeGlutaredoxin 38e-0649.3
NC_013971:73037:102651102651103322672Erwinia amylovora ATCC 49946 chromosome, complete genomeDNA repair protein8e-0649.3
CP002185:4035502:405689340568934057363471Escherichia coli W, complete genomeconserved hypothetical protein7e-0649.3
CP002516:44744:487104871049180471Escherichia coli KO11, complete genomeDNA repair protein RadC7e-0649.3
NC_016902:44744:487104871049180471Escherichia coli KO11FL chromosome, complete genomeDNA repair protein RadC7e-0649.3
NC_010498:301000:317136317136317615480Escherichia coli SMS-3-5, complete genomeRadC family DNA repair protein7e-0649.3
NC_011750:4390000:441190544119054412396492Escherichia coli IAI39 chromosome, complete genomeputative DNA repair protein; CP4-44 prophage6e-0649.3
NC_007912:4661141:466260946626094663283675Saccharophagus degradans 2-40, complete genomeDEAD/DEAH box helicase-like8e-0648.9
NC_016902:4236680:423880042388004239273474Escherichia coli KO11FL chromosome, complete genomeDNA repair protein RadC9e-0648.9
CP002516:4236680:423880042388004239273474Escherichia coli KO11, complete genomeDNA repair protein RadC9e-0648.9