Pre_GI Gene

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Host: NC_011094 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_011094:3778000 Salmonella enterica subsp. enterica serovar Schwarzengrund str

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This serovar is the predominant cause of Salmonellosis in Southeast Asia, a major source of imported food products to the USA. It was also the cause of the first recognized outbreak of fluoroquinolone-resistant salmonellosis in the USA. Recent reports suggest that high-level fluoroquinolone resistance is emerging in S. Schwarzengrund in different parts of the world. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.


This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
377823737792621026L-threonine 3-dehydrogenaseQuickGO ontologyBLASTP
3779272378046811972-amino-3-ketobutyrate CoA ligaseQuickGO ontologyBLASTP
37806713781603933ADP-L-glycero-D-manno-heptose-6-epimeraseQuickGO ontologyBLASTP
378160637826521047ADP-heptose--LPS heptosyltransferaseQuickGO ontologyBLASTP
37826523783605954ADP-heptose--LPS heptosyltransferaseQuickGO ontologyBLASTP
378364537848591215O-antigen ligaseQuickGO ontologyBLASTP
378491637860611146lipopolysaccharide 12-N-acetylglucosaminetransferaseQuickGO ontologyBLASTP
37861613786970810lipopolysaccharide core biosynthesis proteinQuickGO ontologyBLASTP
37871203787818699lipopolysaccharide core biosynthesis proteinQuickGO ontologyBLASTP
378784137888541014lipopolysaccharide 12-glucosyltransferaseQuickGO ontologyBLASTP
378887237898851014lipopolysaccharide 13-galactosyltransferaseQuickGO ontologyBLASTP
378989137909821092UDP-D-galactoseglucosyllipopolysaccharide-1 6-D-galactosyltransferaseQuickGO ontologyBLASTP
37910563791979924UDP-glucoseglucosyl LPS a12-glucosyltransferaseQuickGO ontologyBLASTP
37920343792831798lipopolysaccharide core biosynthesis protein RfaPQuickGO ontologyBLASTP
379282437939481125lipopolysaccharide core biosynthesis protein RfaGQuickGO ontologyBLASTP
379394537950151071lipopolysaccharide core biosynthesis proteinQuickGO ontologyBLASTP
3795424379670112783-deoxy-D-manno-octulosonic-acid transferaseQuickGO ontologyBLASTP
37967103797189480phosphopantetheine adenylyltransferaseQuickGO ontologyBLASTP
37972173798026810formamidopyrimidine-DNA glycosylaseQuickGO ontologyBLASTP
3798124379829116850S ribosomal protein L33QuickGO ontologyBLASTP
3798312379854823750S ribosomal protein L28QuickGO ontologyBLASTP
37987663799431666DNA repair protein RadCQuickGO ontologyBLASTP
379960438008271224phosphopantothenoylcysteine decarboxylasephosphopantothenate--cysteine ligaseQuickGO ontologyBLASTP
38008053801263459deoxyuridine 5-triphosphate nucleotidohydrolaseQuickGO ontologyBLASTP
38013713801967597nucleoid occlusion proteinQuickGO ontologyBLASTP
38020453802686642orotate phosphoribosyltransferaseQuickGO ontologyBLASTP
38027653803481717ribonuclease PHQuickGO ontologyBLASTP
38036073804470864hypothetical proteinBLASTP
380466238059241263site-specific recombinase phage integrase family proteinQuickGO ontologyBLASTP
38063683806526159hypothetical proteinBLASTP
380652738078491323hypothetical proteinBLASTP
38079033808424522hypothetical protein
38090833809916834hypothetical proteinBLASTP
38111883811790603hypothetical proteinBLASTP
38119013812026126hypothetical protein
381241238134911080hypothetical proteinBLASTP
38135963814498903transcriptional regulator LysR family proteinQuickGO ontologyBLASTP
38145723815453882beta-lactamaseQuickGO ontologyBLASTP
38154583815580123hypothetical protein
38157043816321618hypothetical proteinBLASTP
381631838180031686NAD-dependent DNA ligase LigBQuickGO ontologyBLASTP
38182603818883624guanylate kinaseQuickGO ontologyBLASTP
38189383819213276DNA-directed RNA polymerase subunit omegaQuickGO ontologyBLASTP
381923238213432112bifunctional pppGpp synthetase II guanosine-35-bis pyrophosphate 3-pyrophosphohydrolaseQuickGO ontologyBLASTP
38213483822037690tRNA guanosine-2-O-methyltransferaseQuickGO ontologyBLASTP
382204338241242082ATP-dependent DNA helicase RecGQuickGO ontologyBLASTP
382416038253651206sodiumglutamate symporterQuickGO ontologyBLASTP
382559338269841392uracil-xanthine permeaseQuickGO ontologyBLASTP