Pre_GI Gene

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Host: NC_012668 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_012668:62500 Vibrio cholerae MJ-1236 chromosome 1, complete sequence

Host Lineage: Vibrio cholerae; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: Vibrio cholerae MJ-1236 is a toxigenic O1 El Tor Inaba strain from Matlab, Bangladesh, 1994 that represents the "Matlab variant" of El Tor. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. Vibrio cholerae can colonize the mucosal surface of the small intestines of humans where it will cause cholera, a severe and sudden onset diarrheal disease. One famous outbreak was traced to a contaminated well in London in 1854 by John Snow, and epidemics, which can occur with extreme rapidity, are often associated with conditions of poor sanitation. The disease has a high lethality if left untreated, and millions have died over the centuries. There have been seven major pandemics between 1817 and today. Six were attributed to the classical biotype, while the 7th, which started in 1961, is associated with the El Tor biotype.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
6251563141627glycerol-3-phosphate acyltransferase PlsYQuickGO ontologyBLASTP
6319064002813hypothetical proteinBLASTP
64156651751020DNA-bindingiron metalloproteinAP endonucleaseQuickGO ontologyBLASTP
654166563121630S ribosomal protein S21QuickGO ontologyBLASTP
6566166104444GatBYqeyQuickGO ontologyBLASTP
66152679571806DNA primaseQuickGO ontologyBLASTP
68005699331929RNA polymerase sigma factor RpoDQuickGO ontologyBLASTP
700787015376tRNA-MetQuickGO ontologyBLASTP
70319715601242phage integraseQuickGO ontologyBLASTP
71950731821233hypothetical proteinBLASTP
73286751661881methyl-accepting chemotaxis proteinQuickGO ontologyBLASTP
7516375978816AraC family transcriptional regulatorQuickGO ontologyBLASTP
77432790211590methyl-accepting chemotaxis proteinQuickGO ontologyBLASTP
7939979512114hypothetical protein
8033580808474DNA repair protein RadCQuickGO ontologyBLASTP
8079981242444hypothetical proteinBLASTP