Pre_GI Gene

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Host: NC_004547 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_004547:639726 Erwinia carotovora subsp. atroseptica SCRI1043, complete genome

Host Lineage: Pectobacterium atrosepticum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (ATCC BAA-672) is a virulent blackleg isolated from the stem of a potato plant. Causative agent for blackleg and soft rot disease in potatoes. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Both Pectobacterium chrysanthemia and Pectobacterium carotovora cause soft-rot diseases of various plant hosts through degradation of the plant cell walls. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium. Pectobacterium atrosepticum is an environmentally widespread organism that causes blackleg and soft rot disease in potatoes. This organism produces pectolytic enzymes that destroy plant tissue and allow the bacteria to spread.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
639329639733405hypothetical proteinBLASTP
639726640700975hypothetical proteinBLASTP
6407106421341425hypothetical proteinBLASTP
642137642508372hypothetical proteinBLASTP
6425056440371533hypothetical proteinBLASTP
644070644459390hypothetical proteinBLASTP
644602644961360putative plasmid-related proteinQuickGO ontologyBLASTP
644958645260303putative plasmid-related proteinQuickGO ontologyBLASTP
6455586474291872restriction enzyme alpha subunitQuickGO ontologyBLASTP
647419648405987restriction enzyme beta subunitQuickGO ontologyBLASTP
648538648678141hypothetical protein
648731648898168hypothetical protein
649514650404891hypothetical proteinBLASTP
650412650702291putative plasmid-related proteinQuickGO ontology
651097651408312hypothetical protein
651458651814357hypothetical protein
651896652369474hypothetical proteinBLASTP
652458652862405hypothetical proteinBLASTP
653073653486414putative DNA repair proteinQuickGO ontologyBLASTP
653663654259597hypothetical proteinBLASTP
654256654528273hypothetical proteinBLASTP
654599655084486hypothetical proteinBLASTP
6551506571111962hypothetical proteinBLASTP
657186658079894hypothetical proteinBLASTP
658154659074921hypothetical proteinBLASTP
6597136610261314putative oxidoreductaseQuickGO ontologyBLASTP