Pre_GI: BLASTP Hits

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Query: NC_008149:318860:338421 Yersinia pestis Nepal516, complete genome

Start: 338421, End: 338765, Length: 345

Host Lineage: Yersinia pestis; Yersinia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Isolated from a soil sample from Nepal. Causative agent of plague. Specific virulence factors are encoded within pathogenicity islands (PAIs) that are required for the invasive phenotype associated with Yersinia infections. One key virulence plasmid contained by the three human-specific pathogens is pCD1/pYv, which encodes a type III secretion system for the delivery of virulence proteins that contribute to internalization into the host cell. It is the causative agent of plague (bubonic and pulmonary) a devastating disease which has killed millions worldwide. The organism can be transmitted from rats to humans through the bite of an infected flea or from human-to-human through the air during widespread infection. Yersinia pestis is an extremely pathogenic organism that requires very few numbers in order to cause disease, and is often lethal if left untreated. The organism is enteroinvasive, and can survive and propagate in macrophages prior to spreading systemically throughout the host. Yersinia pestis consists of three biotypes or serovars, Antiqua, Mediavalis, and Orientalis, that are associated with three major pandemics throughout human history. pMT1 encodes a protein, murine toxin, that aids rat-to-human transmission by enhancing survival of the organism in the flea midgut. Yersinia pestis also contains a PAI on the chromosome that is similar to the SPI-2 PAI from Salmonella that allows intracellular survival in the organism.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017160:396600:417065417065417409345Yersinia pestis D182038 chromosome, complete genomePTS system transporter subunit IIB1e-60231
NC_017154:394401:414865414865415209345Yersinia pestis D106004 chromosome, complete genomePTS system transporter subunit IIB1e-60231
NC_014029:452248:472713472713473057345Yersinia pestis Z176003 chromosome, complete genomePTS system transporter subunit IIB1e-60231
NC_003143:398748:419213419213419557345Yersinia pestis CO92, complete genomePTS system, IIB component1e-60231
NC_017188:2512357:2527206252720625291611956Bacillus amyloliquefaciens TA208 chromosome, complete genomeManP1e-1685.1
NC_017191:2514401:2529250252925025312051956Bacillus amyloliquefaciens XH7 chromosome, complete genomePTS system mannose-specific transporter subunit IIBCA1e-1685.1
NC_014328:2872721:288806328880632888383321Clostridium ljungdahlii ATCC 49587 chromosome, complete genomePTS system transporter subunit IIB3e-1683.6
NC_013198:394000:412577412577412906330Lactobacillus rhamnosus GG, complete genomePTS system, fructose-specific IIB component7e-1682.4
NC_019842:2575000:2590378259037825923361959Bacillus amyloliquefaciens subsp. plantarum AS43.3 chromosome,PTS system mannose-specific transporter subunits IIBCA8e-1682.4
NC_009725:2517428:2536355253635525383131959Bacillus amyloliquefaciens FZB42, complete genomeManP8e-1682.4
NC_013198:394000:401644401644401961318Lactobacillus rhamnosus GG, complete genomePTS system, IIB component1e-1582
NC_015391:2449927:245365024536502453964315Carnobacterium sp. 17-4 chromosome, complete genomefructose-like phosphotransferase enzyme IIB component 29e-1682
NC_020272:1384525:1386630138663013885881959Bacillus amyloliquefaciens IT-45, complete genomePTS system mannose-specific transporter subunits IIBCA1e-1581.6
NC_017195:1230485:1249720124972012516721953Bacillus subtilis subsp. subtilis str. RO-NN-1 chromosome, completephosphotransferase system3e-1580.1
NC_020244:1264500:1275845127584512777971953Bacillus subtilis XF-1, complete genomephosphotransferase system (PTS) mannose-specific enzyme IIBCA component3e-1580.1
NC_009328:3322802:3325601332560133275771977Geobacillus thermodenitrificans NG80-2 chromosome, complete genomephosphotransferase system, fructose-specific IIC component1e-1479
NC_013850:2685835:269478626947862695097312Klebsiella variicola At-22 chromosome, complete genomePTS system, fructose-specific, IIB subunnit2e-1477.8
NC_011660:2175537:219537921953792195699321Listeria monocytogenes HCC23 chromosome, complete genomePTS system fructose-specific eiibbc component (eiibbc-fru)2e-1477.8
NC_009648:1914621:192537319253731925684312Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomePTS family enzyme IIB, fructose-mannitol-specific2e-1477.8
NC_012731:2650603:266135326613532661664312Klebsiella pneumoniae NTUH-K2044 chromosome, complete genomefructose-mannitol-specific PTS family enzyme IIB component2e-1477.8
NC_010498:4072681:4073544407354440749741431Escherichia coli SMS-3-5, complete genome2e-1477.4
NC_016779:4969626:4981803498180349837551953Bacillus cereus F837/76 chromosome, complete genomePTS system mannose-specific transporter subunit IIB3e-1477
NC_012472:5015621:5027811502781150297631953Bacillus cereus 03BB102, complete genomephosphotransferase system3e-1477
NC_008600:5005345:5017535501753550195021968Bacillus thuringiensis str. Al Hakam, complete genomephosphotransferase system (PTS) mannose-specific enzyme IIBCA4e-1476.6
NC_013642:942767:9707789707789721481371Thermotoga naphthophila RKU-10, complete genomePTS system, fructose subfamily, IIC subunit5e-1476.3
NC_009437:2579161:2581183258118325825441362Caldicellulosiruptor saccharolyticus DSM 8903, complete genomePTS system, fructose subfamily, IIC subunit8e-1475.5
NC_015663:4447984:445816844581684458479312Enterobacter aerogenes KCTC 2190 chromosome, complete genomePTS system, fructose-specific, IIB subunit1e-1375.5
NC_011969:4945441:4958931495893149608831953Bacillus cereus Q1 chromosome, complete genomepts mannose-specific enzyme iibca component1e-1375.1
NC_010483:642577:6481096481096494791371Thermotoga sp. RQ2, complete genomePTS system, fructose subfamily, IIC subunit1e-1375.1
NC_020181:969599:978612978612978923312Enterobacter aerogenes EA1509E, complete genomePTS system, fructose-specific IIA component / PTS system, fructose-specific IIB component / PTS system, fructose-specific IIC component2e-1374.7
NC_017300:1426975:1442403144240314444362034Corynebacterium pseudotuberculosis 1002 chromosome, completePTS system fructose-specific transporter subunit IIABC3e-1373.9
NC_016932:1414226:1429649142964914316822034Corynebacterium pseudotuberculosis 316 chromosome, complete genomePTS system, manose-specific EIIABC component3e-1373.9
NC_008149:318860:338858338858339178321Yersinia pestis Nepal516, complete genomePTS system, IIB component4e-1373.6
NC_003143:398748:419650419650419970321Yersinia pestis CO92, complete genomePTS system, IIB component4e-1373.6
NC_014029:452248:473150473150473470321Yersinia pestis Z176003 chromosome, complete genomePTS system transporter subunit IIB4e-1373.6
NC_017154:394401:415302415302415622321Yersinia pestis D106004 chromosome, complete genomePTS system transporter subunit IIB4e-1373.6
NC_017160:396600:417502417502417822321Yersinia pestis D182038 chromosome, complete genomePTS system transporter subunit IIB4e-1373.6
NC_015424:2510764:2528848252884825307941947Aeromonas veronii B565 chromosome, complete genomePermease IIC component4e-1373.6
NC_015389:1070500:1083655108365510851601506Coriobacterium glomerans PW2 chromosome, complete genomePTS system, fructose subfamily, IIC subunit1e-1272
NC_017270:1755552:1797654179765417990571404Vibrio cholerae LMA3984-4 chromosome chromosome I, completePTS system fructose-specific transporter subunit IIBC4e-1270.1
NC_003030:249648:2647922647922661681377Clostridium acetobutylicum ATCC 824, complete genomePTS system, fructoso-specific IIBC component6e-1269.3
NC_015687:250768:2647902647902661661377Clostridium acetobutylicum DSM 1731 chromosome, complete genomePTS system, fructoso-specific IIBC component6e-1269.3
NC_007508:3034718:3034718303471830364601743Xanthomonas campestris pv. vesicatoria str. 85-10, complete genomePTS system, fructose-specific IIBC component (protein-N(pi)-phosphohistidine-sugar phosphotransferase)9e-1268.9
NC_015565:2827444:2843374284337428447531380Desulfotomaculum carboxydivorans CO-1-SRB chromosome, completePTS system, fructose subfamily, IIC subunit1e-1168.9
NC_020207:843822:8602068602068616691464Enterococcus faecium NRRL B-2354, complete genomePTS system, galactose-inducible IIB component, PTS system, galactose-inducible IIC component1e-1168.6
NC_013171:416279:4333464333464352081863Anaerococcus prevotii DSM 20548, complete genomePTS system, fructose subfamily, IIC subunit1e-1168.6
NC_012781:4065:1960719607215351929Eubacterium rectale ATCC 33656, complete genomePTS system, fructose-specific, IIABC component1e-1168.6
NC_017271:2789667:2789667278966727914061740Xanthomonas campestris pv. raphani 756C chromosome, completepts system fructose-specific eiibc component (eiibc-fru)2e-1168.2
NC_020995:789665:808828808828809151324Enterococcus casseliflavus EC20, complete genomePTS system, Fru family, IIB component4e-1166.6
NC_013517:3385166:340191734019173402234318Sebaldella termitidis ATCC 33386, complete genomePTS system, fructose-specific, IIB subunnit5e-1166.2
NC_013956:2592378:259999725999972600320324Pantoea ananatis LMG 20103 chromosome, complete genomeFrwB6e-1166.2
NC_014335:3461115:3471548347154834732601713Bacillus cereus biovar anthracis str. CI chromosome, completePTS fructose-specific enzyme IIBC component8e-1165.9
NC_011773:3547507:3558350355835035602061857Bacillus cereus AH820 chromosome, complete genomePTS system fructose-specific transporter subunit IIABC8e-1165.9
NC_012581:709234:7175947175947194741881Bacillus anthracis str. CDC 684 chromosome, complete genomePTS system fructose-specific transporter subunit IIABC8e-1165.9
NC_003210:403743:419999419999420331333Listeria monocytogenes EGD-e, complete genomehypothetical protein8e-1165.9
NC_013766:417991:434249434249434581333Listeria monocytogenes 08-5578 chromosome, complete genomehypothetical protein8e-1165.9
NC_013768:418000:434270434270434602333Listeria monocytogenes 08-5923, complete genomehypothetical protein8e-1165.9
NC_014334:369974:3873613873613893491989Lactobacillus casei str. Zhang chromosome, complete genomePTS system fructose-specific transporter subunit IIABC8e-1165.9
NC_015634:2492771:2522737252273725246351899Bacillus coagulans 2-6 chromosome, complete genomePTS system, fructose subfamily, IIC subunit1e-1065.5
NC_016894:377446:3791203791203810301911Acetobacterium woodii DSM 1030 chromosome, complete genomefructose-specific PTS system II components ABC5e-1063.2
NC_000958:73685:8921489214910101797Deinococcus radiodurans R1 plasmid MP1, complete sequencePTS system, fructose-specific IIBC component5e-1063.2
NC_003909:3483244:3494145349414534960011857Bacillus cereus ATCC 10987, complete genomePTS system, fructose-specific IIABC component5e-1063.2
NC_012913:1832500:1861449186144918631131665Aggregatibacter aphrophilus NJ8700, complete genomepts system fructose-specific eiibc component (eiibc-fru)7e-1062.8
NC_013199:392450:4054264054264073691944Lactobacillus rhamnosus Lc 705, complete genomePTS system, fructose-specific IIABC component (fruA-2)9e-1062.4
NC_014654:1:2647126471278681398Halanaerobium sp. 'sapolanicus' chromosome, complete genomePTS system, fructose subfamily, IIC subunit1e-0962
NC_014976:3469395:3485323348532334872751953Bacillus subtilis BSn5 chromosome, complete genomePTS mannose-specific transporter subunit IIBCA1e-0961.6
NC_009708:3035798:3035798303579830374981701Yersinia pseudotuberculosis IP 31758 chromosome, complete genomePTS system fructose-specific transporter subunit IIBC1e-0961.6
NC_006055:183823:2101622101622123092148Mesoplasma florum L1, complete genomefructose-specific PTS system IIABC component1e-0961.6
NC_013921:2293411:2296809229680922981671359Thermoanaerobacter italicus Ab9 chromosome, complete genomePTS system, fructose subfamily, IIC subunit2e-0961.6
NC_014837:1144500:1172413117241311738251413Pantoea sp. At-9b chromosome, complete genomePTS system fructose subfamily transporter subunit IIC2e-0960.8
NC_005362:1796696:1806355180635518083401986Lactobacillus johnsonii NCC 533, complete genomephosphoenolpyruvate-dependent sugar phosphotransferase system EIIABC, probable fructose specific2e-0960.8
NC_006155:1567306:1585173158517315868731701Yersinia pseudotuberculosis IP 32953, complete genomePTS system, fructose-specific IIBC component3e-0960.5
NC_010634:1565788:1583670158367015853701701Yersinia pseudotuberculosis PB1/+, complete genomePTS system, fructose subfamily, IIC subunit3e-0960.5
NC_004088:3186954:3186954318695431886541701Yersinia pestis KIM, complete genomePTS system, fructose-specific IIBC transport protein3e-0960.5
NC_008150:1147883:1165177116517711668771701Yersinia pestis Antiqua, complete genomePTS system, fructose-specific IIBC component3e-0960.5
NC_005810:1413305:1413305141330514150051701Yersinia pestis biovar Microtus str. 91001, complete genomefructose-specific PTS system IIBC component3e-0960.5
NC_010465:3046904:3046904304690430486041701Yersinia pseudotuberculosis YPIII, complete genomePTS system, fructose subfamily, IIC subunit3e-0960.5
NC_003143:1441211:1459077145907714607771701Yersinia pestis CO92, complete genomePTS system, fructose-specific IIBC component3e-0960.5
NC_010159:1558000:1575192157519215768921701Yersinia pestis Angola, complete genomePTS system, fructose-specific EIIBC component3e-0960.5
NC_008149:3022970:3022970302297030246701701Yersinia pestis Nepal516, complete genomePTS system, fructose-specific IIBC component3e-0960.5
NC_009381:2731965:2731965273196527336651701Yersinia pestis Pestoides F chromosome, complete genomePTS system fructose-specific transporter subunits IIBC3e-0960.5
NC_014029:1512605:1530463153046315321631701Yersinia pestis Z176003 chromosome, complete genomePTS system fructose-specific transporter subunit IIBC3e-0960.5
NC_017154:1454704:1472571147257114742711701Yersinia pestis D106004 chromosome, complete genomePTS system fructose-specific transporter subunit IIBC3e-0960.5
NC_017168:4363000:4381145438114543828451701Yersinia pestis A1122 chromosome, complete genomePTS system fructose-specific transporter subunit IIBC3e-0960.5
NC_017265:2807302:2807302280730228090021701Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,PTS system fructose-specific transporter subunit IIBC3e-0960.5
NC_007644:3229:1315513155145431389Moorella thermoacetica ATCC 39073, complete genomePTS fructose IIC component4e-0960.1
NC_017160:1299733:1299733129973313012411509Yersinia pestis D182038 chromosome, complete genomePTS system fructose-specific transporter subunit IIBC4e-0960.1
NC_013174:73948:7394873948754591512Jonesia denitrificans DSM 20603, complete genomePTS system, fructose subfamily, IIC subunit1e-0858.9
NC_010067:3538169:354044335404433540862420Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein1e-0858.5
NC_013517:2055071:205614620561462056460315Sebaldella termitidis ATCC 33386, complete genomePTS system, fructose-specific, IIB subunnit4e-0857
NC_015214:1853106:1874088187408818760912004Lactobacillus acidophilus 30SC chromosome, complete genomePTS system, fructose-specific enzyme II6e-0856.2
NC_007295:618830:6188306188306208121983Mycoplasma hyopneumoniae J, complete genomePTS system, fructose-specific IIABC component2e-0754.3
NC_007332:642000:6420216420216440031983Mycoplasma hyopneumoniae 7448, complete genomePTS system, fructose-specific IIABC component2e-0754.3
NC_006360:605197:6069526069526089341983Mycoplasma hyopneumoniae 232, complete genomeputattive pts system, fructose-specific IIABC component3e-0753.9