Pre_GI: BLASTP Hits

Some Help

Query: NC_007333:810381:832638 Thermobifida fusca YX, complete genome

Start: 832638, End: 834188, Length: 1551

Host Lineage: Thermobifida fusca; Thermobifida; Nocardiopsaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Produces thermostable enzymes. Members of this genus are distinguished from most actinomycetes by their ability to form clustered spores that attach directly to the substrate mycelia, and not to the aerial mycelia. Moreover, these bacteria do not produce aerial mycelia at all. M. fusca is the most thermophilic, with some growth detectable at up to 75 degrees C. The natural habitat of Thermobifida is self-heated organic materials, like rotting hay, compost, manure or urban waste piles, etc., which they share with other thermophilic and thermotolerant actinomycetes. Biological and physiological features of these bacteria are accordingly adapted to the conditions of such environments, namely the high temperatures and the presence of abundant plant materials and other bio-polymer substrates of natural origin. Actinomycetes are well suited for this environment because they generally grow as branching hyphae and are well adapted to penetration and degradation of insoluble substrates such as lignocellulose. Spores of Thermobifida are known to cause allergic respiratory diseases called mushroom worker disease and farmer's lung, which develop in agricultural workers who by the nature of their work happen to breathe in significant amounts of actinomycete spores from hay, compost, etc. Some isolates of this organism are able to mineralize plastic disposals and other anthropogenic xenobiotics. Thermobifidaare of particular interest because they produce multiple thermostable enzymes involved in the degradation of lignocellulose.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_020453:896458:9170169170169191782163Agromonas oligotrophica S58 DNA, complete genomehypothetical protein4e-1376.6
NC_013205:526281:554529554529555251723Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446,DNA polymerase III, epsilon subunit8e-0962.4
NC_013205:1123280:115256811525681153290723Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446,DNA polymerase III, epsilon subunit5e-0963.2
NC_013205:1548500:155584215558421556564723Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446,DNA polymerase III, epsilon subunit2e-0964.3
NC_017167:2298962:235386823538682354572705Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1DNA polymerase III subunit epsilon1e-1068.2
NC_017167:1648913:178021217802121781027816Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1DNA polymerase III subunit epsilon2e-0964.3
NC_008340:2272692:2275718227571822779072190Alkalilimnicola ehrlichei MLHE-1, complete genomeputative PAS/PAC sensor protein1e-1378.2
NC_015554:4724245:4724245472424547263772133Alteromonas sp. SN2 chromosome, complete genomeDNA polymerase III, epsilon subunit5e-1479.7
NC_014960:1697818:1714903171490317177072805Anaerolinea thermophila UNI-1, complete genomeDnaQ exonuclease/DinG helicase family protein1e-1068.6
NC_015320:273979:291370291370291960591Archaeoglobus veneficus SNP6 chromosome, complete genomeDNA polymerase III subunit epsilon1e-1068.6
NC_018532:166468:2113192113192125721254Arthrobacter sp. Rue61a plasmid p232, complete sequenceexonuclease1e-21104
NC_007530:3616828:3629517362951736338184302Bacillus anthracis str. 'Ames Ancestor', complete genomeDNA polymerase III subunit alpha3e-0963.9
NC_007530:1459412:1473989147398914767932805Bacillus anthracis str. 'Ames Ancestor', complete genomeATP-dependent DNA helicase4e-1170.1
NC_012659:3617000:3629417362941736337184302Bacillus anthracis str. A0248, complete genomeDNA polymerase III PolC3e-0963.9
NC_003997:3617000:3629390362939036336914302Bacillus anthracis str. Ames, complete genomeDNA polymerase III subunit alpha3e-0963.9
NC_012581:559182:6048696048696091704302Bacillus anthracis str. CDC 684 chromosome, complete genomeDNA polymerase III PolC3e-0963.9
NC_005945:1459357:1473943147394314767472805Bacillus anthracis str. Sterne, complete genomeATP-dependent DNA helicase4e-1170.1
NC_005945:3615623:3630085363008536343864302Bacillus anthracis str. Sterne, complete genomeDNA polymerase III subunit alpha3e-0963.9
NC_005945:3359598:337683333768333377780948Bacillus anthracis str. Sterne, complete genomeDNA polymerase III subunit epsilon1e-1275.5
NC_012472:3661912:3678278367827836811902913Bacillus cereus 03BB102, complete genomeDNA polymerase III, PolC-type2e-0964.7
NC_011658:3603009:3617434361743436217354302Bacillus cereus AH187 chromosome, complete genomeDNA polymerase III PolC3e-0963.9
NC_011773:3651963:3664276366427636685774302Bacillus cereus AH820 chromosome, complete genomeDNA polymerase III PolC3e-0963.9
NC_003909:3606177:3606177360617736090892913Bacillus cereus ATCC 10987, complete genomeDNA polymerase III, alpha subunit, Gram-positive type2e-0964.7
NC_004722:3777907:3790222379022237945294308Bacillus cereus ATCC 14579, complete genomeDNA polymerase III subunit alpha2e-0964.7
NC_011725:3821789:3834107383410738384084302Bacillus cereus B4264 chromosome, complete genomeDNA polymerase III PolC2e-0964.3
NC_014335:3567931:3580242358024235845434302Bacillus cereus biovar anthracis str. CI chromosome, completeDNA polymerase III subunit alpha3e-0963.9
NC_006274:3697255:3709943370994337142444302Bacillus cereus E33L, complete genomeDNA polymerase III subunit alpha3e-0963.9
NC_016779:3579743:3596109359610935990212913Bacillus cereus F837/76 chromosome, complete genomeDNA polymerase III subunit alpha2e-0964.7
NC_011772:3787500:3799826379982638041274302Bacillus cereus G9842, complete genomeDNA polymerase III, alpha subunit, Gram-positive type2e-0964.3
NC_016771:3555506:3569931356993135742324302Bacillus cereus NC7401, complete genomeDNA polymerase III subunit alpha3e-0963.9
NC_011969:3549000:3561396356139635656974302Bacillus cereus Q1 chromosome, complete genomeDNA polymerase iii polc3e-0963.9
NC_009674:2551759:2564124256412425684254302Bacillus cytotoxicus NVH 391-98 chromosome, complete genomeDNA polymerase III PolC2e-0964.7
NC_014103:3985897:4000185400018540044954311Bacillus megaterium DSM319 chromosome, complete genomeDNA polymerase III subunit alpha8e-0962.4
NC_013791:1323903:133877913387791339441663Bacillus pseudofirmus OF4 chromosome, complete genomehypothetical protein8e-0755.8
NC_014171:3701051:3713367371336737176684302Bacillus thuringiensis BMB171 chromosome, complete genomeDNA polymerase III PolC2e-0964.3
NC_017208:3816753:3829460382946038337614302Bacillus thuringiensis serovar chinensis CT-43 chromosome, completeDNA polymerase III PolC2e-0964.3
NC_005957:3638750:3651061365106136553624302Bacillus thuringiensis serovar konkukian str. 97-27, completeDNA polymerase III subunit alpha3e-0963.9
NC_008600:3643905:3660271366027136631892919Bacillus thuringiensis str. Al Hakam, complete genomeDNA polymerase III, alpha subunit2e-0964.7
NC_010184:3675424:3688149368814936924504302Bacillus weihenstephanensis KBAB4, complete genomeDNA polymerase III, alpha subunit2e-0964.7
NC_008618:1206157:122169012216901222313624Bifidobacterium adolescentis ATCC 15703, complete genomeputative DNA polymerase III epsilon subunit6e-2099.4
NC_012814:1465738:147026014702601470826567Bifidobacterium animalis subsp. lactis Bl-04, complete genomeDNA polymerase III alpha subunit3e-1067
NC_012815:1465670:147019214701921470758567Bifidobacterium animalis subsp. lactis DSM 10140, complete genomeDNA polymerase III alpha subunit3e-1067
NC_013714:1521404:153849615384961539449954Bifidobacterium dentium Bd1, complete genomednaQ DNA polymerase III alpha subunit2e-1894.4
NC_015381:1318818:133573613357361336347612Burkholderia gladioli BSR3 chromosome 1, complete sequenceDNA polymerase III subunit epsilon3e-1583.6
NC_014722:771483:789311789311790054744Burkholderia rhizoxinica HKI 454, complete genomeDNA polymerase III, epsilon chain2e-0964.3
NC_014387:1175927:1178121117812111827104590Butyrivibrio proteoclasticus B316 chromosome 1, complete genomeDNA polymerase III C PolC12e-0964.7
NC_017294:758992:7723037723037764964194Candidatus Arthromitus sp. SFB-mouse-Yit, complete genomeDNA polymerase III PolC3e-1067.4
NC_015514:2414617:2418229241822924200911863Cellulomonas fimi ATCC 484 chromosome, complete genomeDNA polymerase III subunit epsilon3e-1377
NC_014151:2312000:2313921231392123158161896Cellulomonas flavigena DSM 20109 chromosome, complete genomeDNA polymerase III, epsilon subunit1e-1068.2
NC_015671:1540860:1558211155821115600791869Cellvibrio gilvus ATCC 13127 chromosome, complete genomeDNA polymerase III subunit epsilon2e-1273.9
NC_002620:936869:955612955612956364753Chlamydia muridarum Nigg, complete genomeDNA polymerase III subunit epsilon4e-0757
NC_005085:1269787:132217013221701322889720Chromobacterium violaceum ATCC 12472, complete genomeDNA-directed DNA polymerase, epsilon chain2e-0860.8
NC_009697:2394826:2425391242539124296894299Clostridium botulinum A str. ATCC 19397 chromosome, completeDNA polymerase III PolC6e-0962.8
NC_009495:2524000:2553368255336825576664299Clostridium botulinum A str. ATCC 3502 chromosome, complete genomeDNA polymerase III PolC6e-0962.8
NC_009698:2367171:2397736239773624020344299Clostridium botulinum A str. Hall chromosome, complete genomeDNA polymerase III PolC6e-0962.8
NC_012563:2721658:2727878272787827321764299Clostridium botulinum A2 str. Kyoto, complete genomeDNA polymerase III, alpha subunit, Gram-positive type5e-0963.2
NC_010520:2585014:2616121261612126204194299Clostridium botulinum A3 str. Loch Maree, complete genomeDNA polymerase III, alpha subunit, Gram-positive type9e-1065.5
NC_010516:2511035:2541591254159125458894299Clostridium botulinum B1 str. Okra, complete genomeDNA polymerase III, alpha subunit, Gram-positive type6e-0962.8
NC_012658:2584355:2611499261149926157974299Clostridium botulinum Ba4 str. 657 chromosome, complete genomeDNA polymerase III PolC2e-0964.3
NC_011898:513835:5162685162685205694302Clostridium cellulolyticum H10, complete genomeDNA polymerase III, alpha subunit1e-1481.6
NC_017179:1378875:1381865138186513861634299Clostridium difficile BI1, complete genomeDNA polymerase III PolC-type8e-0755.8
NC_013315:1370000:1372091137209113763894299Clostridium difficile CD196 chromosome, complete genomeDNA polymerase III PolC-type8e-0755.8
NC_015275:911999:916822916822917739918Clostridium lentocellum DSM 5427 chromosome, complete genomeExonuclease RNase T and DNA polymerase III5e-0963.2
NC_021182:4829000:4832933483293348372764344Clostridium pasteurianum BC1, complete genomeDNA polymerase III, alpha chain1e-1171.6
NC_015856:1733500:173754217375421738285744Collimonas fungivorans Ter331 chromosome, complete genomeDNA polymerase III subunit epsilon3e-1067.4
NC_020302:744956:768229768229768939711Corynebacterium halotolerans YIM 70093 = DSM 44683, completehypothetical protein4e-0860.1
NC_007164:822000:830685830685831353669Corynebacterium jeikeium K411, complete genomehypothetical protein2e-1894.7
NC_007298:1499344:151363215136321514246615Dechloromonas aromatica RCB, complete genomeDNA polymerase III, epsilon subunit3e-1170.1
NC_012526:2155947:215999921599992160607609Deinococcus deserti VCD115, complete genomeputative DNA-directed DNA polymerase (DNA polymerase III, epsilon subunit)4e-0963.2
NC_021184:2936244:297147929714792972228750Desulfotomaculum gibsoniae DSM 7213, complete genomeexonuclease, DNA polymerase III, epsilon subunit family2e-0654.7
NC_015589:1899329:1899329189932919036064278Desulfotomaculum ruminis DSM 2154 chromosome, complete genomeDNA polymerase III subunit alpha1e-0655.1
NC_014836:993448:100898610089861009495510Desulfurispirillum indicum S5 chromosome, complete genomeDNA-directed DNA polymerase1e-1791.7
NC_009952:3596399:363066736306673631359693Dinoroseobacter shibae DFL 12, complete genomeDNA polymerase III subunit epsilon6e-1272.8
NC_013508:3188978:322647132264713227070600Edwardsiella tarda EIB202, complete genomeOrf81 bacteriophage 1865e-0653.1
NC_006831:821000:824448824448825176729Ehrlichia ruminantium str. Gardel, complete genomeDNA polymerase III, epsilon chain4e-0757
NC_005295:845000:848673848673849401729Ehrlichia ruminantium str. Welgevonden, complete genomeDNA polymerase III, epsilon subunit4e-0757
NC_012778:841934:8669008669008714414542Eubacterium eligens ATCC 27750, complete genomeDNA polymerase III subunit alpha, the Gram-positive type2e-1067.8
NC_017033:1525132:153944315394431539967525Frateuria aurantia DSM 6220 chromosome, complete genomeDNA polymerase III subunit epsilon family exonuclease1e-0758.9
NC_007517:3430237:345016934501693450825657Geobacter metallireducens GS-15, complete genomeDNA polymerase III, epsilon subunit6e-1582.8
NC_002939:1505701:151169815116981512243546Geobacter sulfurreducens PCA, complete genomeexonuclease3e-1377
NC_015497:2997275:299727529972752998030756Glaciecola agarilytica 4H-3-7+YE-5 chromosome, complete genomeExonuclease RNase T and DNA polymerase III2e-0861.2
NC_007645:6858465:687346568734656874034570Hahella chejuensis KCTC 2396, complete genomeputative exonuclease4e-0756.6
NC_015588:939037:9556029556029572151614Isoptericola variabilis 225 chromosome, complete genomeExonuclease RNase T and DNA polymerase III2e-23110
NC_015588:1965787:1967662196766219693981737Isoptericola variabilis 225 chromosome, complete genomeDNA polymerase III, epsilon subunit7e-1479.3
NC_007802:179780:185734185734186429696Jannaschia sp. CCS1, complete genomeDNA polymerase III, epsilon subunit1e-0758.5
NC_009664:3718927:3738654373865437404591806Kineococcus radiotolerans SRS30216, complete genomeDNA polymerase III, epsilon subunit2e-1274.7
NC_016838:85487:106597106597107154558Klebsiella pneumoniae subsp. pneumoniae HS11286 plasmid pKPHS1,hypothetical protein5e-0652.8
NC_013169:1661135:1661135166113516628891755Kytococcus sedentarius DSM 20547, complete genomeexonuclease, DNA polymerase III, epsilon subunit family2e-1377.8
NC_014727:2036340:205057920505792051475897Lactobacillus delbrueckii subsp. bulgaricus ND02 chromosome,DNA polymerase iii polc-type5e-1169.7
NC_014727:1071773:107280510728051073331527Lactobacillus delbrueckii subsp. bulgaricus ND02 chromosome,2e-0757.4
NC_015975:1056731:1056731105673110610804350Lactobacillus ruminis ATCC 27782 chromosome, complete genomeDNA polymerase III PolC6e-0859.3
NC_013192:519600:5301375301375345164380Leptotrichia buccalis DSM 1135, complete genomeDNA polymerase III, alpha subunit1e-0964.7
NC_015387:942974:942974942974943720747Marinithermus hydrothermalis DSM 14884 chromosome, complete genomeDNA polymerase III, epsilon subunit6e-1066.2
NC_007681:153476:1579261579261592631338Methanosphaera stadtmanae DSM 3091, complete genomepredicted 3'-5' exonuclease6e-1066.2
NC_015572:2186394:2188322218832221897221401Methylomonas methanica MC09 chromosome, complete genomeDNA polymerase III subunit epsilon2e-0964.7
NC_015125:1668780:1675325167532516765511227Microbacterium testaceum StLB037, complete genomeDNA polymerase III, epsilon subunit1e-1171.6
NC_017955:4075804:4080513408051340817991287Modestobacter marinus, complete genomeexonuclease1e-1378.2
NC_015711:8964410:896558589655858966244660Myxococcus fulvus HW-1 chromosome, complete genomeexonuclease8e-0755.8
NC_017511:602000:602234602234603028795Neisseria gonorrhoeae TCDC-NG08107 chromosome, complete genomeputative DNA polymerase III subunit5e-1169.7
NC_015222:2475792:2494021249402124954121392Nitrosomonas sp. AL212 chromosome, complete genomeDNA polymerase III, epsilon subunit2e-1480.9
NC_015731:1731896:174314017431401743883744Nitrosomonas sp. Is79A3 chromosome, complete genomeDNA polymerase III subunit epsilon9e-0755.5
NC_015731:2460248:2460248246024824616391392Nitrosomonas sp. Is79A3 chromosome, complete genomeDNA polymerase III subunit epsilon4e-1376.6
NC_014210:3742112:3757353375735337591401788Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,DNA polymerase III, epsilon subunit7e-1789
NC_009488:1165927:118756911875691188237669Orientia tsutsugamushi str. Boryong, complete genomeDNA polymerase III epsilon chain2e-1377.8
NC_008609:2518993:253566125356612536173513Pelobacter propionicus DSM 2379, complete genomeDNA-directed DNA polymerase4e-1376.6
NC_009454:1462930:1466970146697014697832814Pelotomaculum thermopropionicum SI, complete genomehypothetical protein2e-1067.4
NC_010531:708049:722835722835723545711Polynucleobacter necessarius STIR1, complete genomeDNA polymerase III, epsilon subunit1e-1068.2
NC_014033:3462437:346957734695773470068492Prevotella ruminicola 23 chromosome, complete genomeexonuclease1e-0862
NC_004578:5269194:526919452691945269808615Pseudomonas syringae pv. tomato str. DC3000, complete genomeexonuclease, putative5e-1273.2
NC_008313:2685531:268771026877102688450741Ralstonia eutropha H16 chromosome 1, complete sequenceDNA polymerase III epsilon subunit1e-0758.5
NC_014311:1545175:154795115479511548679729Ralstonia solanacearum PSI07 chromosome, complete genomeDNA polymerase III epsilon subunit2e-0963.9
NC_015677:1:204132041321027615Ramlibacter tataouinensis TTB310 chromosome, complete genomeexonuclease protein3e-1273.9
NC_004347:2668000:268937626893762690104729Shewanella oneidensis MR-1, complete genomeDNA polymerase III, epsilon subunit3e-1067
NC_009901:2915939:293148329314832932211729Shewanella pealeana ATCC 700345, complete genomeDNA polymerase III, epsilon subunit9e-1065.5
NC_008577:2818546:284401128440112844739729Shewanella sp. ANA-3 chromosome 1, complete sequenceDNA polymerase III, epsilon subunit7e-1065.9
NC_008321:2569315:258567025856702586398729Shewanella sp. MR-4, complete genomeDNA polymerase III, epsilon subunit3e-1067
NC_008322:2637646:265401326540132654741729Shewanella sp. MR-7, complete genomeDNA polymerase III, epsilon subunit3e-1067
NC_013165:3146000:3150468315046831534282961Slackia heliotrinireducens DSM 20476, complete genomeexonuclease, DNA polymerase III, epsilon subunit family2e-0757.8
NC_013947:3080290:3097900309790030991321233Stackebrandtia nassauensis DSM 44728 chromosome, complete genomeExonuclease RNase T and DNA polymerase III3e-28126
NC_007622:1214629:1218890121889012232064317Staphylococcus aureus RF122, complete genomeDNA polymerase III6e-0859.7
NC_017338:1234077:1236038123603812403544317Staphylococcus aureus subsp. aureus JKD6159 chromosome, completeDNA polymerase III subunit alpha7e-0859.3
NC_002952:1291444:1295705129570513000214317Staphylococcus aureus subsp. aureus MRSA252, complete genomeDNA polymerase III PolC-type8e-0859.3
NC_009782:1327340:1331601133160113359174317Staphylococcus aureus subsp. aureus Mu3, complete genomeDNA polymerase III alpha chain PolC-type8e-0858.9
NC_017341:1291583:1295844129584413001604317Staphylococcus aureus subsp. aureus str. JKD6008 chromosome,DNA polymerase III subunit alpha8e-0858.9
NC_012121:897866:9022149022149065274314Staphylococcus carnosus subsp. carnosus TM300, complete genomehomolog of DNA polymerase III, alpha subunit6e-0756.2
NC_004461:921364:9423929423929467204329Staphylococcus epidermidis ATCC 12228, complete genomeDNA polymerase III, alpha chain PolC-type5e-0859.7
NC_017353:1699652:1711348171134817156644317Staphylococcus lugdunensis N920143, complete genomeDNA polymerase III PolC-type6e-0962.8
NC_007350:1551457:1558499155849915628154317Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305,DNA polymerase III alpha chain PolC-type2e-0861.2
NC_013515:347671:3919693919693963664398Streptobacillus moniliformis DSM 12112, complete genomeDNA polymerase III, alpha subunit2e-0861.2
NC_012471:781063:7810637810637835342472Streptococcus equi subsp. equi 4047, complete genomeATP-dependent DNA helicase5e-1066.2
NC_015760:61345:7446974469788634395Streptococcus salivarius CCHSS3, complete genomeDNA polymerase III polC-type (PolIII)4e-0963.2
NC_006449:58436:7157471574759684395Streptococcus thermophilus CNRZ1066, complete genomeDNA polymerase III subunit alpha2e-0964.3
NC_006448:59654:7279172791771854395Streptococcus thermophilus LMG 18311, complete genomeDNA polymerase III subunit alpha2e-0964.3
NC_015957:3282183:3285931328593132878471917Streptomyces violaceusniger Tu 4113 chromosome, complete genomeDNA polymerase III subunit epsilon3e-1687
NC_013595:9994000:100023441000234410002913570Streptosporangium roseum DSM 43021, complete genomeDNA-directed DNA polymerase5e-1479.7
NC_012438:1514376:152834415283441528961618Sulfurihydrogenibium azorense Az-Fu1 chromosome, complete genomeDNA polymerase III PolC-type (PolIII)2e-0964.7
NC_014152:1430156:1433347143334714376754329Thermincola sp. JR, complete genomeDNA polymerase III, alpha subunit8e-1065.9
NC_019970:1343670:1355741135574113599734233Thermoanaerobacterium thermosaccharolyticum M0795, complete genomeDNA polymerase III, alpha chain1e-1378.2
NC_020419:1037899:105155110515511052147597Uncultured Termite group 1 bacterium phylotype Rs-D17 DNA, completeDNA polymerase III epsilon subunit2e-1790.9
NS_000191:1037899:105155110515511052147597Uncultured Termite group 1 bacterium phylotype Rs-D17, completeDNA polymerase III epsilon subunit2e-1790.9
NC_008786:2687688:269100026910002691713714Verminephrobacter eiseniae EF01-2, complete genomeDNA polymerase III, epsilon subunit5e-0962.8
NC_016628:935420:938432938432938986555Vibrio furnissii NCTC 11218 chromosome 2, complete sequenceDNA polymerase III subunit alpha7e-1065.9
NC_007508:1221500:122526112252611225995735Xanthomonas campestris pv. vesicatoria str. 85-10, complete genomeDNA polymerase III subunit epsilon1e-0655.1