Pre_GI Gene

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Host: NC_004347 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_004347:2668000 Shewanella oneidensis MR-1, complete genome

Host Lineage: Shewanella oneidensis; Shewanella; Shewanellaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: This strain was isolated from Oneida lake in New York, USA. Potential bioremediation organism. This genus includes species that inhabit a wide range of environments and are capable of utilizing a wide variety of electron acceptors during anaerobic respiration including some insoluble metal oxides while using very few carbon sources such as lactate or acetate. This group of organisms have been studied extensively for their electron transport systems. This organism is a facultative anaerobe that is capable of using a wide variety of terminal electron acceptors during anaerobic respiration which may make it valuable for bioremediation. Since the bacteria can reduce chromium and uranium from the liquid phase to form insoluble compounds, they may be used to eliminate these two environmental pollutants from water.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
266830426694161113response regulatorQuickGO ontologyBLASTP
266942626714021977response regulatorQuickGO ontologyBLASTP
26714112671989579response regulatorQuickGO ontologyBLASTP
267208226734071326response regulatorQuickGO ontologyBLASTP
267341926746061188hypothetical proteinBLASTP
267459926759811383sensor histidine kinaseQuickGO ontologyBLASTP
267596526790243060sensor histidine kinaseresponse regulatorQuickGO ontologyBLASTP
267907326803621290sensor histidine kinaseQuickGO ontologyBLASTP
26803652680937573hypothetical proteinBLASTP
26809342681299366response regulatorQuickGO ontologyBLASTP
26821242682465342hypothetical proteinBLASTP
26825642683256693transcriptional regulator-related proteinQuickGO ontologyBLASTP
26833822684149768transcriptional regulator-related proteinQuickGO ontologyBLASTP
26845372684914378hypothetical protein
26850072685843837hypothetical proteinBLASTP
26860232686379357hypothetical proteinBLASTP
26864832686830348hypothetical proteinBLASTP
26870472687196150outer membrane protein OmpA weak homologQuickGO ontologyBLASTP
2687482268755877tRNA-AspQuickGO ontologyBLASTP
2687616268769277tRNA-AspQuickGO ontologyBLASTP
268786026892991440hypothetical proteinBLASTP
26893762690104729DNA polymerase III epsilon subunitQuickGO ontologyBLASTP
26901752690651477ribonuclease HIQuickGO ontologyBLASTP