Pre_GI Gene

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Host: NC_004578 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_004578:5269194 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
52691945269808615exonuclease putativeQuickGO ontologyBLASTP
52698275270303477hypothetical proteinBLASTP
52705745271371798hypothetical proteinBLASTP
52714745272136663hypothetical proteinBLASTP
527222352733141092endonucleaseexonucleasephosphatase family proteinQuickGO ontologyBLASTP
52733305274127798hypothetical protein
52742675275259993alkaline D-peptidase putativeQuickGO ontologyBLASTP
52753035275476174hypothetical protein
52755435275791249hypothetical protein
52761015276277177hypothetical proteinBLASTP
52775175278287771transcriptional regulator Sir2 familyQuickGO ontologyBLASTP
52798405280049210hypothetical protein
52804385281079642hypothetical protein
528259752841261530coronafacic acid synthetase ligase componentQuickGO ontologyBLASTP
52842135284464252coronafacic acid synthetase acyl carrier protein componentQuickGO ontologyBLASTP
52844765284973498coronafacic acid synthetase dehydratase componentQuickGO ontologyBLASTP
528496752861121146coronafacic acid beta-ketoacyl synthetase componentQuickGO ontologyBLASTP
52861095286642534coronafacic acid synthetase componentQuickGO ontologyBLASTP
528663952880571419coronafacic acid synthetase ligase componentQuickGO ontologyBLASTP
528794552961048160coronafacic acid polyketide synthase IQuickGO ontologyBLASTP