Pre_GI: BLASTP Hits

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Query: NC_005126:1315474:1315474 Photorhabdus luminescens subsp. laumondii TTO1, complete genome

Start: 1315474, End: 1318800, Length: 3327

Host Lineage: Photorhabdus luminescens; Photorhabdus; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated on Trinidad and Tobago. It is a symbiont of the nematode Heterorhabditis bacteriophora. Bioluminescent bacterium. This organism is unusual in that it is symbiotic within one insect, and pathogenic in another, the only organism that is known to exhibit this dual phenotype. Enzymes are then released by the bacteria that result in rapid degradation of the insect body, allowing both bacteria and nematode to feed and reproduce. During this period Photorhabdus luminescens releases bacteriocidal products, including antibiotics and bacteriocins, that prevent infection of the larva by competitive microbes. The result is promotion of Photorhabdus luminescens-nematode interactions that result in continuation of the symbiotic relationship. In order to engage in a symbiotic relationship with the nematode and a pathogenic one with the insect larva, the bacterium encodes specific factors that encourage both. These include a large number of genes that code for secreted toxins and enzymes, as well as genes that encode products for the production of antibiotics and bacteriocins. Secretion of these products occurs by an array of systems including type I, type II, and type III secretion systems. The type III system is closely related to the Yersinia plasmid-encoded type III system. Genes that promote symbiotic relationships are also encoded on genomic islands on the chromosome including some that affect nematode development. Virulence genes appear to be active during exponential growth. Symbiotic genes appear to function during stationary phase (post-exponential) growth. The switch from one state to another is controlled. Photorhabdus luminescens is capable of giving off light, a complex process that requires the products of the lux operon.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_005126:1265071:1315474131547413188003327Photorhabdus luminescens subsp. laumondii TTO1, complete genomehypothetical protein02047
NC_005126:589000:6001186001186034443327Photorhabdus luminescens subsp. laumondii TTO1, complete genomehypothetical protein02047
NC_005126:4333767:4360643436064343639693327Photorhabdus luminescens subsp. laumondii TTO1, complete genomehypothetical protein01986
NC_012962:3864000:3887807388780738910973291Photorhabdus asymbiotica, complete genomeputative dna primase01877
NC_005126:4333767:4369530436953043728593330Photorhabdus luminescens subsp. laumondii TTO1, complete genomehypothetical protein01681
NC_012912:2174183:2194248219424821975023255Dickeya zeae Ech1591, complete genomezinc finger CHC2-family protein01321
NC_005126:1315474:1324640132464013264511812Photorhabdus luminescens subsp. laumondii TTO1, complete genomehypothetical protein01048
NC_005126:1315474:1323138132313813246041467Photorhabdus luminescens subsp. laumondii TTO1, complete genomehypothetical protein0970
NC_004547:3817656:3817656381765638205352880Erwinia carotovora subsp. atroseptica SCRI1043, complete genomeDnaG primase-like protein0962
NC_004547:3817656:3824586382458638274652880Erwinia carotovora subsp. atroseptica SCRI1043, complete genomeDnaG primase-like protein0962
NC_012962:3463644:3473664347366434764322769Photorhabdus asymbiotica, complete genomednag primase-like0954
NC_012962:1068102:1094367109436710971352769Photorhabdus asymbiotica, complete genomeputative DNA primase-like protein0954
NC_012962:1068102:1086594108659410893622769Photorhabdus asymbiotica, complete genomeputative DNA primase-like protein0954
NC_014228:2883500:2895894289589428986562763Xenorhabdus nematophila ATCC 19061, complete genomeDnaG primase-like0927
NC_012962:3463644:3480735348073534835182784Photorhabdus asymbiotica, complete genomednag primase-like protein0893
NC_012962:1068102:1079149107914910818482700Photorhabdus asymbiotica, complete genomeputative DNA primase-like protein0890
NC_012962:1068102:1101438110143811041372700Photorhabdus asymbiotica, complete genomednag primase-like protein0890
NC_012214:1267589:1268831126883112715152685Erwinia pyrifoliae Ep1/96, complete genomeDnaG primase-like protein0873
NC_014228:2883500:2889034288903428906741641Xenorhabdus nematophila ATCC 19061, complete genome3e-177623
NC_020209:1847895:186252118625211863267747Pseudomonas poae RE*1-1-14, complete genomezinc finger CHC2-family protein3e-48194
NC_013132:5942981:5957635595763559603342700Chitinophaga pinensis DSM 2588, complete genomezinc finger CHC2-family protein4e-45184
NC_014228:2883500:289068828906882891359672Xenorhabdus nematophila ATCC 19061, complete genome2e-35152
NC_016510:2312481:2326214232621423277971584Flavobacterium columnare ATCC 49512 chromosome, complete genomehypothetical protein5e-35150
NC_009441:4384500:4403046440304644047161671Flavobacterium johnsoniae UW101 chromosome, complete genomehypothetical protein3e-31138
NC_009441:4384500:4392839439283943945181680Flavobacterium johnsoniae UW101 chromosome, complete genomehypothetical protein6e-31137
NC_009441:4328035:4336257433625743379271671Flavobacterium johnsoniae UW101 chromosome, complete genomehypothetical protein2e-29132
NC_009441:4357593:4366575436657543682451671Flavobacterium johnsoniae UW101 chromosome, complete genomehypothetical protein4e-29131
NC_009441:3174588:3183302318330231849811680Flavobacterium johnsoniae UW101 chromosome, complete genomehypothetical protein9e-29129
NC_017025:1651870:1663510166351016657952286Flavobacterium indicum GPTSA100-9, complete genomehypothetical protein3e-28127
NC_006461:953817:9714979714979732751779Thermus thermophilus HB8, complete genomehypothetical protein9e-25116
NC_008148:2231045:2275852227585222780772226Rubrobacter xylanophilus DSM 9941, complete genomehypothetical protein1e-24115
NC_011126:1430608:1444832144483214464391608Hydrogenobaculum sp. Y04AAS1, complete genomeDNA primase7e-24113
NC_015587:1414304:1425168142516814267721605Hydrogenobaculum sp. SHO chromosome, complete genomeDNA primase3e-23111
NC_015557:1412917:1425300142530014269041605Hydrogenobaculum sp. 3684 chromosome, complete genomeDNA primase3e-23111
NC_017511:602000:6188166188166206781863Neisseria gonorrhoeae TCDC-NG08107 chromosome, complete genomeDNA primase2e-22108
NC_017518:1610803:1610803161080316125751773Neisseria meningitidis NZ-05/33 chromosome, complete genomeDNA primase1e-21106
NC_013016:1441424:1441424144142414431961773Neisseria meningitidis alpha14 chromosome, complete genomeDNA primase2e-21105
NC_007644:626992:6464766464766482931818Moorella thermoacetica ATCC 39073, complete genomeDNA primase2e-21105
NC_012968:2228943:2245658224565822474451788Methylotenera mobilis JLW8, complete genomeDNA primase6e-21103
NC_008054:1030994:1054357105435710561951839Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, completeDNA primase8e-21103
NC_008529:1042220:1072674107267410745121839Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365, completeDNA primase1e-20102
NC_008260:2340824:2348052234805223500101959Alcanivorax borkumensis SK2, complete genomeDNA primase2e-20102
NC_015856:1182974:1201614120161412034101797Collimonas fungivorans Ter331 chromosome, complete genomeDNA primase3e-20101
NC_008262:2169262:2182362218236221841491788Clostridium perfringens SM101, complete genomeDNA primase1e-1999.8
NC_007644:1847000:1860063186006318621352073Moorella thermoacetica ATCC 39073, complete genomehypothetical protein1e-1999.8
NC_008463:632869:6491246491246511181995Pseudomonas aeruginosa UCBPP-PA14, complete genomeputative DNA primase1e-1999.8
NC_007005:5500196:5500196550019655021511956Pseudomonas syringae pv. syringae B728a, complete genomeDNA primase1e-1999.4
NC_003366:2286083:2299209229920923009961788Clostridium perfringens str. 13, complete genomeDNA primase1e-1999.4
NC_013416:1429881:1450044145004414518011758Aggregatibacter actinomycetemcomitans D11S-1, complete genomeDNA primase2e-1998.6
NC_004578:568236:5907645907645927221959Pseudomonas syringae pv. tomato str. DC3000, complete genomeDNA primase2e-1998.6
NC_009512:469000:4879214879214899031983Pseudomonas putida F1, complete genomeDNA primase3e-1998.2
NC_012668:62500:6615266152679571806Vibrio cholerae MJ-1236 chromosome 1, complete sequenceDNA primase4e-1997.8
NC_016445:2938887:2963419296341929652481830Vibrio cholerae O1 str. 2010EL-1786 chromosome 1, completeDNA primase5e-1997.4
NC_015733:443122:4594704594704614521983Pseudomonas putida S16 chromosome, complete genomeDNA primase5e-1997.4
NC_012969:2476318:2510866251086625126201755Methylovorus glucosetrophus SIP3-4 chromosome, complete genomeDNA primase1e-1896.7
NC_011661:1332309:1333581133358113353141734Dictyoglomus turgidum DSM 6724, complete genomeDNA primase1e-1896.3
NC_014733:2363838:2379761237976123815151755Methylovorus sp. MP688 chromosome, complete genomeDNA primase2e-1895.9
NC_016625:1259778:1277202127720212790851884Burkholderia sp. YI23 chromosome 2, complete sequenceDNA primase5e-1894
NC_007947:2447635:2481210248121024829401731Methylobacillus flagellatus KT, complete genomeDNA primase5e-1894
NC_010278:1625695:1647401164740116491431743Actinobacillus pleuropneumoniae serovar 3 str. JL03 chromosome,DNA primase1e-1792.8
NC_009434:796878:8157678157678177191953Pseudomonas stutzeri A1501, complete genomeDNA primase1e-1792.8
NC_014393:1782811:1796268179626817980431776Clostridium cellulovorans 743B chromosome, complete genomeDNA primase2e-1792
NC_016602:3122700:3125715312571531274601746Vibrio furnissii NCTC 11218 chromosome 1, complete sequenceDNA primase3e-1791.7
NC_011761:2067695:2082858208285820846091752Acidithiobacillus ferrooxidans ATCC 23270 chromosome, completeDNA primase4e-1791.3
NC_014323:961825:9628329628329646281797Herbaspirillum seropedicae SmR1 chromosome, complete genomeDNA primase5e-1790.9
NC_012721:1986436:2007255200725520091411887Burkholderia glumae BGR1 chromosome 2, complete genomeDNA primase5e-1790.9
NC_010805:530876:5330715330715349391869Burkholderia multivorans ATCC 17616 chromosome 2, completeDNA primase1e-1689.7
NC_007650:722961:7238837238837257601878Burkholderia thailandensis E264 chromosome II, complete sequenceDNA primase1e-1689.7
NC_009659:543000:5439475439475457461800Janthinobacterium sp. Marseille chromosome, complete genomeDNA primase1e-1689.7
NC_009831:1255995:1275068127506812767891722Shewanella sediminis HAW-EB3, complete genomeDNA primase1e-1689.4
NC_007435:1077792:1091879109187910937531875Burkholderia pseudomallei 1710b chromosome II, complete sequenceDNA primase2e-1688.6
NC_009078:2351046:2362008236200823638821875Burkholderia pseudomallei 1106a chromosome II, complete sequenceDNA primase2e-1688.6
NC_009075:2428248:2439215243921524410891875Burkholderia pseudomallei 668 chromosome II, complete sequenceDNA primase2e-1688.6
NC_015663:770485:7704857704857722301746Enterobacter aerogenes KCTC 2190 chromosome, complete genomeDNA primase3e-1688.2
NC_009053:1668500:1686354168635416880961743Actinobacillus pleuropneumoniae L20, complete genomeDNA primase3e-1688.2
NC_010939:1633000:1650112165011216518541743Actinobacillus pleuropneumoniae serovar 7 str. AP76, completeDNA primase3e-1688.2
NC_006351:2398403:2409370240937024112441875Burkholderia pseudomallei K96243 chromosome 2, complete sequenceDNA primase3e-1688.2
NC_020419:344000:3611163611163628821767Uncultured Termite group 1 bacterium phylotype Rs-D17 DNA, completeDNA primase6e-1687.4
NS_000191:344000:3611163611163628821767Uncultured Termite group 1 bacterium phylotype Rs-D17, completeDNA primase6e-1687.4
NC_014618:690056:7285317285317302761746Enterobacter cloacae SCF1 chromosome, complete genomeDNA primase6e-1687
NC_019970:1991944:2000976200097620027721797Thermoanaerobacterium thermosaccharolyticum M0795, complete genomeDNA primase, catalytic core1e-1586.3
NC_014220:1670000:1686348168634816881351788Syntrophothermus lipocalidus DSM 12680 chromosome, complete genomeDNA primase2e-1585.9
NC_017187:1511567:1533928153392815355621635Arcobacter butzleri ED-1, complete genomeDNA primase2e-1585.9
NC_006270:2591317:2607765260776526095881824Bacillus licheniformis ATCC 14580, complete genomeDNA primase2e-1585.5
NC_006322:2592176:2608624260862426104471824Bacillus licheniformis ATCC 14580, complete genomeDNA primase2e-1585.5
NC_009255:1071868:1074112107411210759831872Burkholderia vietnamiensis G4 chromosome 2, complete sequenceDNA primase2e-1585.5
NC_009850:1601982:1619364161936416209981635Arcobacter butzleri RM4018, complete genomeDNA primase2e-1585.5
NC_009708:633054:6515706515706533181749Yersinia pseudotuberculosis IP 31758 chromosome, complete genomeDNA primase3e-1585.1
NC_008800:4013298:4017292401729240190401749Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,DNA primase3e-1585.1
NC_010552:752007:7542487542487561161869Burkholderia ambifaria MC40-6 chromosome 2, complete sequenceDNA primase3e-1585.1
NC_015161:2060369:2078213207821320799581746Deinococcus proteolyticus MRP chromosome, complete genomeDNA primase3e-1584.7
NC_015224:3892972:3892972389297238947201749Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,DNA primase4e-1584.7
NC_007760:3692798:3706003370600337073611359Anaeromyxobacter dehalogenans 2CP-C, complete genomeDNA primase5e-1584.3
NC_004545:15650:6038060380621161737Buchnera aphidicola str. Bp (Baizongia pistaciae), complete genomeDNA primase6e-1584
NC_015555:863173:8703728703728721681797Thermoanaerobacterium xylanolyticum LX-11 chromosome, completeDNA primase6e-1584
NC_014837:3739408:3744398374439837461431746Pantoea sp. At-9b chromosome, complete genomeDNA primase7e-1583.6
NC_010003:795355:8399988399988417371740Petrotoga mobilis SJ95, complete genomeDNA primase7e-1583.6
NC_016629:3396500:3421846342184634236331788Desulfovibrio africanus str. Walvis Bay chromosome, completeDNA primase8e-1583.6
NC_014221:687537:6875376875376893661830Truepera radiovictrix DSM 17093 chromosome, complete genomeDNA primase1e-1482.8
NC_007912:909112:9279379279379299071971Saccharophagus degradans 2-40, complete genomehistidine kinase2e-1482.4
NC_002971:1523065:1539492153949215411531662Coxiella burnetii RSA 493, complete genomeDNA primase2e-1482.4
NC_014963:4569015:4574825457482545766031779Terriglobus saanensis SP1PR4 chromosome, complete genomeDNA primase3e-1481.6
NC_021182:2219286:2227073222707322288451773Clostridium pasteurianum BC1, complete genomeDNA primase, catalytic core3e-1481.6
NC_009615:2184300:2201806220180622039232118Parabacteroides distasonis ATCC 8503 chromosome, complete genomeDNA primase4e-1481.3
NC_005071:671084:6924626924626945162055Prochlorococcus marinus str. MIT 9313, complete genomeDNA primase6e-1480.9
NC_014623:7331860:7334613733461373364301818Stigmatella aurantiaca DW4/3-1 chromosome, complete genomeDNA primase domain-containing protein1e-1380.1
NC_014484:1163576:1168687116868711704771791Spirochaeta thermophila DSM 6192 chromosome, complete genomeDNA primase1e-1379.7
NC_007516:1086948:1103219110321911052672049Synechococcus sp. CC9605, complete genomeDNA primase2e-1379
NC_013525:1953920:1972749197274919746201872Thermobaculum terrenum ATCC BAA-798 chromosome 1, complete genomeDNA primase2e-1378.6
NC_012803:691215:6925706925706944801911Micrococcus luteus NCTC 2665, complete genomeDNA primase3e-1378.2
NC_007645:6407370:6409677640967764114791803Hahella chejuensis KCTC 2396, complete genomeDNA primase (bacterial type)5e-1377.8
NC_014314:755166:7704637704637722201758Dehalogenimonas lykanthroporepellens BL-DC-9 chromosome, completeDNA primase6e-1377.4
NC_015957:8677395:8698723869872387006811959Streptomyces violaceusniger Tu 4113 chromosome, complete genomeDNA primase1e-1276.3
NC_008025:1998500:2008651200865120104141764Deinococcus geothermalis DSM 11300, complete genomeDNA primase2e-1275.5
NC_008710:703740:7509007509007526751776Borrelia turicatae 91E135, complete genomeDNA primase5e-1274.3
NC_004663:5099845:5104729510472951069212193Bacteroides thetaiotaomicron VPI-5482, complete genomeDNA primase1e-1172.8
NC_013235:2129982:2129982212998221319281947Nakamurella multipartita DSM 44233, complete genomeDNA primase2e-1172.4
NC_016816:674171:6884636884636902081746Pantoea ananatis LMG 5342, complete genomeDNA primase5e-1170.9
NC_014370:885937:9456719456719488023132Prevotella melaninogenica ATCC 25845 chromosome chromosome I,DNA primase7e-1170.5
NC_014830:3438504:3458664345866434601631500Intrasporangium calvum DSM 43043 chromosome, complete genomeDNA primase catalytic core domain1e-1069.7
NC_015674:1114915:1120449112044911220021554Helicobacter bizzozeronii CIII-1, complete genomeDNA primase2e-1069.3
NC_017358:182854:2090322090322106031572Helicobacter pylori Cuz20 chromosome, complete genomeDNA primase DNA G2e-1068.9
NC_016943:1560000:1560698156069815625841887Blastococcus saxobsidens DD2, complete genomeDNA primase2e-1068.9
NC_012985:779279:8014168014168033621947Candidatus Liberibacter asiaticus str. psy62, complete genomeDNA primase3e-1068.6
NC_013159:1422370:1422370142237014243431974Saccharomonospora viridis DSM 43017, complete genomeDNA primase6e-1067.4
NC_008578:889907:8899078899078918741968Acidothermus cellulolyticus 11B, complete genomeDNA primase6e-1067.4
NC_013757:1732747:1732747173274717346331887Geodermatophilus obscurus DSM 43160, complete genomeDNA primase2e-0965.9
NC_010673:703816:7536587536587554391782Borrelia hermsii DAH, complete genomeDNA primase2e-0965.5
NC_013093:1411882:1413651141365114155401890Actinosynnema mirum DSM 43827, complete genomeDNA primase7e-0963.9
NC_013525:1871795:1898273189827319002371965Thermobaculum terrenum ATCC BAA-798 chromosome 1, complete genomezinc finger CHC2-family protein1e-0862.8
NC_016906:3286384:3310209331020933121251917Gordonia polyisoprenivorans VH2 chromosome, complete genomeDNA primase DnaG2e-0862.4
NC_017368:468934:4778814778814794911611Helicobacter pylori F16, complete genomeDNA primase2e-0862.4
NC_017214:1304774:1325085132508513271782094Bifidobacterium animalis subsp. lactis BB-12 chromosome, completeDNA primase7e-0860.5
NC_017215:669358:6896706896706917632094Bifidobacterium animalis subsp. lactis CNCM I-2494 chromosome,nucleotidyltransferase7e-0860.5
NC_017216:669296:6896086896086917012094Bifidobacterium animalis subsp. lactis BLC1, complete genomeDNA primase7e-0860.5
NC_011835:1395716:1416040141604014181212082Bifidobacterium animalis subsp. lactis AD011 chromosome, completeDNA primase7e-0860.5
NC_012815:669436:6897606897606918412082Bifidobacterium animalis subsp. lactis DSM 10140, complete genomeDNA primase6e-0860.5
NC_012814:669434:6897586897586918392082Bifidobacterium animalis subsp. lactis Bl-04, complete genomeDNA primase6e-0860.5
NC_017217:669437:6897616897616918422082Bifidobacterium animalis subsp. lactis V9 chromosome, completeDNA primase6e-0860.5
NC_016887:1714664:1717398171739817192661869Nocardia cyriacigeorgica GUH-2, complete genomeDNA primase2e-0759.3
NC_011244:746801:7651817651817669561776Borrelia recurrentis A1, complete genomeDNA primase3e-0758.2
NC_009952:2381601:2383717238371723856691953Dinoroseobacter shibae DFL 12, complete genomeDNA primase4e-0758.2
NC_016804:2560000:2576995257699525789141920Mycobacterium bovis BCG str. Mexico chromosome, complete genomeputative DNA primase4e-0757.8
NC_012207:2573562:2590402259040225923211920Mycobacterium bovis BCG str. Tokyo 172, complete genomeputative DNA primase4e-0757.8
NC_009615:1469642:1500558150055815023001743Parabacteroides distasonis ATCC 8503 chromosome, complete genomeDNA primase7e-0757
NC_017372:1212000:122274312227431223534792Helicobacter pylori India7 chromosome, complete genomeDNA primase DNA G1e-0656.6
NC_008229:1397361:1401586140158614031571572Helicobacter acinonychis str. Sheeba, complete genomeDNA primase Dna G2e-0656.2
NC_012781:700226:722543722543723187645Eubacterium rectale ATCC 33656, complete genomeDNA primase2e-0655.5
NC_012781:2552723:257557225755722576216645Eubacterium rectale ATCC 33656, complete genomeDNA primase2e-0655.5
NC_013316:2033906:208354020835402084223684Clostridium difficile R20291, complete genome2e-0655.5
NC_015216:1102837:1139984113998411421192136Methanobacterium sp. AL-21 chromosome, complete genomehypothetical protein2e-0655.5
NC_008095:6253610:626912362691236269278156Myxococcus xanthus DK 1622, complete genomehypothetical protein3e-0655.1