Pre_GI Gene

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Host: NC_004547 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_004547:3817656 Erwinia carotovora subsp. atroseptica SCRI1043, complete genome

Host Lineage: Pectobacterium atrosepticum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (ATCC BAA-672) is a virulent blackleg isolated from the stem of a potato plant. Causative agent for blackleg and soft rot disease in potatoes. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Both Pectobacterium chrysanthemia and Pectobacterium carotovora cause soft-rot diseases of various plant hosts through degradation of the plant cell walls. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium. Pectobacterium atrosepticum is an environmentally widespread organism that causes blackleg and soft rot disease in potatoes. This organism produces pectolytic enzymes that destroy plant tissue and allow the bacteria to spread.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
381765638205352880DnaG primase-like proteinQuickGO ontologyBLASTP
38206483821043396putative phage regulatory proteinQuickGO ontologyBLASTP
38211153821444330hypothetical proteinBLASTP
38214413821785345hypothetical proteinBLASTP
38218463822094249hypothetical proteinBLASTP
38220913822462372hypothetical proteinBLASTP
38224803822674195hypothetical protein
38227803823280501hypothetical protein
382351838245521035tyrosine recombinaseQuickGO ontologyBLASTP
382458638274652880DnaG primase-like proteinQuickGO ontologyBLASTP
38275783827973396putative phage regulatory proteinQuickGO ontologyBLASTP
38280453828374330hypothetical proteinBLASTP
38283713828715345conserved hypothetical proteiQuickGO ontologyBLASTP
38287843829221438hypothetical proteinBLASTP
382921838340744857Rhs proteinQuickGO ontologyBLASTP
38340953835012918hypothetical proteinBLASTP
38350093835965957hypothetical proteinBLASTP
38361343836901768putative lipoproteinQuickGO ontologyBLASTP
38368983837677780putative lipoproteinQuickGO ontologyBLASTP
383767738390501374putative phospholipaseQuickGO ontologyBLASTP
383906038410962037hypothetical proteinBLASTP