Pre_GI: BLASTP Hits

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Query: NC_012125:1330066:1341073 Salmonella enterica subsp. enterica serovar Paratyphi C strain

Start: 1341073, End: 1341300, Length: 228

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The genome of this strain harbors a large pathogenicity island, SPI7, with genes coding for the Vi (virulence) antigen and other genes potentially associated with virulence. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_006905:368942:379366379366379872507Salmonella enterica subsp. enterica serovar Choleraesuis strssDNA-binding protein controls activity of RecBCD nuclease3e-32136
NC_011205:609464:622928622928623434507Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853single-stranded DNA-binding protein3e-31134
NC_011601:717072:725526725526726032507Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomesingle-stranded DNA-binding protein9e-30128
NC_011601:2614691:262590126259012626407507Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomesingle stranded DNA-binding protein9e-30128
NC_011601:1039500:104727310472731047779507Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomesingle-stranded DNA-binding protein9e-30128
NC_011083:4466634:447223744722374472767531Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,single-stranded DNA-binding protein9e-24108
NC_004631:4300457:430606043060604306590531Salmonella enterica subsp. enterica serovar Typhi Ty2, completesingle-strand DNA-binding protein9e-24108
NC_003198:4315807:432141043214104321940531Salmonella enterica subsp. enterica serovar Typhi str. CT18,single-strand DNA-binding protein9e-24108
NC_006905:4405301:441090444109044411434531Salmonella enterica subsp. enterica serovar Choleraesuis strsingle-strand DNA-binding protein9e-24108
NC_006511:4225455:423105842310584231588531Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCsingle-strand DNA-binding protein9e-24108
NC_011149:4390315:439591843959184396448531Salmonella enterica subsp. enterica serovar Agona str. SL483,single-stranded DNA-binding protein9e-24108
NC_003197:4470683:447628644762864476816531Salmonella typhimurium LT2, complete genomesingle-strand DNA-binding protein9e-24108
NC_011080:4461851:446745444674544467984531Salmonella enterica subsp. enterica serovar Newport str. SL254,single-stranded DNA-binding protein9e-24108
NC_015761:4098481:410408341040834104613531Salmonella bongori NCTC 12419, complete genomesingle-strand DNA-binding protein1e-23108
NC_012912:777592:790998790998791546549Dickeya zeae Ech1591, complete genomesingle-strand binding protein1e-23108
NC_010102:4396500:440224244022424402772531Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein1e-23108
NC_011094:4361238:436684143668414367371531Salmonella enterica subsp. enterica serovar Schwarzengrund strsingle-stranded DNA-binding protein9e-24108
NC_011147:4221000:422674542267454227275531Salmonella enterica subsp. enterica serovar Paratyphi A strsingle-stranded DNA-binding protein9e-24108
NC_011205:4486142:449174544917454492275531Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853single-stranded DNA-binding protein9e-24108
NC_010067:3310336:335206733520673352720654Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein8e-24108
NC_017046:4490500:449611644961164496769654Salmonella enterica subsp. enterica serovar Typhimurium str. 798single-strand DNA-binding protein8e-24108
NC_012125:4400636:440611644061164406769654Salmonella enterica subsp. enterica serovar Paratyphi C strainsingle-stranded DNA-binding protein8e-24108
NC_016863:4431831:443743444374344437964531Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1single-stranded DNA-binding protein9e-24108
NC_016860:4575772:458137545813754581905531Salmonella enterica subsp. enterica serovar Typhimurium strsingle-stranded DNA-binding protein9e-24108
NC_016857:4491976:449757944975794498109531Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74single-strand DNA-binding protein9e-24108
NC_016856:4482845:448982844898284490358531Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Ssingle-strand DNA-binding protein9e-24108
NC_016831:4286000:429176542917654292295531Salmonella enterica subsp. enterica serovar Gallinarum/pullorumsingle-strand DNA-binding protein9e-24108
NC_016810:4491975:449757844975784498108531Salmonella enterica subsp. enterica serovar Typhimurium strsingle-strand DNA-binding protein9e-24108
NC_011294:4327904:433350743335074334037531Salmonella enterica subsp. enterica serovar Enteritidis strsingle-stranded DNA-binding protein9e-24108
NC_011274:4305812:431141543114154311945531Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91single-stranded DNA-binding protein9e-24108
NC_020181:3585898:361295336129533613477525Enterobacter aerogenes EA1509E, complete genomeSingle-stranded DNA-binding protein3e-23107
NC_016832:4288980:429458342945834295113531Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,Single-stranded DNA-binding protein2e-23107
NC_008149:3790897:381031138103113810859549Yersinia pestis Nepal516, complete genomesingle-strand binding protein4e-23106
NC_010159:741819:759767759767760315549Yersinia pestis Angola, complete genomesingle-strand binding protein4e-23106
NC_005810:515744:515744515744516292549Yersinia pestis biovar Microtus str. 91001, complete genomesingle-strand DNA-binding protein4e-23106
NC_010465:4222586:423927542392754239823549Yersinia pseudotuberculosis YPIII, complete genomesingle-strand binding protein4e-23106
NC_006155:456000:456318456318456866549Yersinia pseudotuberculosis IP 32953, complete genomesingle-strand DNA-binding protein4e-23106
NC_009381:4169353:418877941887794189327549Yersinia pestis Pestoides F chromosome, complete genomesingle-stranded DNA-binding protein4e-23106
NC_009708:4215500:423536042353604235908549Yersinia pseudotuberculosis IP 31758 chromosome, complete genomesingle-stranded DNA-binding protein4e-23106
NC_017168:751078:770528770528771076549Yersinia pestis A1122 chromosome, complete genomesingle-stranded DNA-binding protein4e-23106
NC_017265:644384:661664661664662212549Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,ssDNA-binding protein4e-23106
NC_021066:3769405:378679237867923787319528Raoultella ornithinolytica B6, complete genomessDNA-binding protein1e-22105
NC_002128:35000:471304713047582453Escherichia coli O157:H7 str. Sakai plasmid pO157, completesingle-strand binding protein2e-22104
NC_007414:56508:696666966670157492Escherichia coli O157:H7 EDL933 plasmid pO157, complete sequencesingle-stranded DNA-binding protein2e-22104
NC_002971:211331:242391242391242867477Coxiella burnetii RSA 493, complete genomesingle-strand binding protein9e-22102
NC_009832:358291:367777367777368283507Serratia proteamaculans 568, complete genomesingle-strand binding protein1e-21102
NC_007613:4119771:413106441310644131600537Shigella boydii Sb227, complete genomessDNA-binding protein2e-21101
NC_010658:4257310:427249742724974273012516Shigella boydii CDC 3083-94, complete genomesingle-stranded DNA-binding protein1e-21101
NC_007005:5367454:538254053825405383091552Pseudomonas syringae pv. syringae B728a, complete genomesingle-strand DNA-binding protein8e-2199
NC_012967:3769499:378437137843713784856486Escherichia coli B str. REL606 chromosome, complete genomeSingle-strand binding protein (SSB) (Helix-destabilizing protein)3e-2097.1
NC_012947:44512:595815958160066486Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completesingle-strand binding protein3e-2097.1
NC_009665:639914:641391641391642095705Shewanella baltica OS185 chromosome, complete genomessDNA-binding protein7e-2095.9
NC_011663:674069:675546675546676256711Shewanella baltica OS223 chromosome, complete genomessDNA-binding protein7e-2095.9
NC_015138:5342473:534545053454505346016567Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completesingle-strand-binding protein1e-1995.5
NC_010645:73573:780457804578545501Bordetella avium 197N, complete genomesingle-strand binding protein1e-1995.1
NC_020829:636773:641229641229641726498Pseudomonas denitrificans ATCC 13867, complete genomesingle-stranded DNA-binding protein1e-1995.1
NC_015556:717993:739169739169739663495Pseudomonas fulva 12-X chromosome, complete genomesingle-strand binding protein1e-1995.1
NC_010322:583842:588747588747589292546Pseudomonas putida GB-1 chromosome, complete genomesingle-stranded DNA-binding protein2e-1994.7
NC_005773:5149768:517168551716855172248564Pseudomonas syringae pv. phaseolicola 1448A, complete genomesingle-strand binding protein2e-1994.4
NC_014228:3391500:341802234180223418534513Xenorhabdus nematophila ATCC 19061, complete genomesingle-strand binding protein4e-1993.6
NC_013892:3278647:329515132951513295663513Xenorhabdus bovienii SS-2004 chromosome, complete genomessDNA-binding protein controls activity of RecBCD nuclease5e-1993.2
NC_014640:6815264:684192068419206842441522Achromobacter xylosoxidans A8 chromosome, complete genomesingle-stranded DNA-binding protein 15e-1992.8
NC_010682:288415:292737292737293294558Ralstonia pickettii 12J chromosome 1, complete sequencesingle-strand binding protein9e-1992
NC_018868:1960542:200924920092492009767519Simiduia agarivorans SA1 = DSM 21679 chromosome, complete genomesingle-stranded DNA-binding protein1e-1891.7
NC_013892:1483000:150161415016141502123510Xenorhabdus bovienii SS-2004 chromosome, complete genomesingle-stranded DNA-binding protein2e-1891.3
NC_013851:3142182:314798431479843148499516Allochromatium vinosum DSM 180 chromosome, complete genomesingle-strand binding protein2e-1891.3
NC_014366:478000:483368483368483904537Gamma proteobacterium HdN1, complete genomesingle-stranded DNA binding protein2e-1891.3
NC_014311:3076519:311849631184963119044549Ralstonia solanacearum PSI07 chromosome, complete genomessDNA-binding protein, controls activity of RecBCD nuclease3e-1890.5
NC_015458:2998000:301060530106053011093489Pusillimonas sp. T7-7 chromosome, complete genomesingle-strand binding protein3e-1890.5
NC_006350:595893:601561601561602115555Burkholderia pseudomallei K96243 chromosome 1, complete sequencesingle-strand DNA-binding protein3e-1890.5
NC_007434:788500:792916792916793473558Burkholderia pseudomallei 1710b chromosome I, complete sequencesingle-strand DNA-binding protein3e-1890.5
NC_015726:406450:413400413400413948549Cupriavidus necator N-1 chromosome 1, complete sequencessDNA-binding protein4e-1890.1
NC_012691:241404:258798258798259370573Tolumonas auensis DSM 9187, complete genomesingle-strand binding protein4e-1890.1
NC_010087:265625:285872285872286426555Burkholderia multivorans ATCC 17616 chromosome 3, completesingle-strand binding protein5e-1889.7
NC_010801:629347:638431638431638985555Burkholderia multivorans ATCC 17616 chromosome 3, completesingle-strand DNA-binding protein5e-1889.7
NC_010682:1624985:164143416414341641967534Ralstonia pickettii 12J chromosome 1, complete sequencesingle-strand binding protein5e-1889.7
NC_014228:3505320:352259335225933523105513Xenorhabdus nematophila ATCC 19061, complete genomessDNA-binding protein controls activity of RecBCD nuclease6e-1889.4
NC_008757:206036:234180234180234824645Polaromonas naphthalenivorans CJ2 plasmid pPNAP01, completesingle-strand binding protein8e-1889
NC_004757:2657490:267719526771952677644450Nitrosomonas europaea ATCC 19718, complete genomeSingle-strand binding protein family9e-1889
NC_014541:3927500:392978639297863930481696Ferrimonas balearica DSM 9799 chromosome, complete genomesingle-strand binding protein1e-1788.6
NC_010519:1963256:198631619863161986768453Haemophilus somnus 2336 chromosome, complete genomesingle-strand binding protein3e-1787
NC_007614:2517226:252841025284102528868459Nitrosospira multiformis ATCC 25196 chromosome 1, completesingle-strand binding protein3e-1787
NC_011206:1233985:124110812411081241602495Acidithiobacillus ferrooxidans ATCC 53993, complete genomesingle-strand binding protein4e-1786.7
NC_009053:895965:902468902468902992525Actinobacillus pleuropneumoniae L20, complete genomesingle-stranded DNA-binding protein6e-1785.9
NC_010278:860165:865965865965866489525Actinobacillus pleuropneumoniae serovar 3 str. JL03 chromosome,single-stranded DNA-binding protein6e-1785.9
NC_010170:3944228:397993239799323980411480Bordetella petrii, complete genomesingle-strand binding protein9e-1785.5
NC_017515:800000:817415817415817939525Neisseria meningitidis M04-240196 chromosome, complete genomesingle-strand binding protein1e-1685.1
NC_014752:834616:841780841780842304525Neisseria lactamica ST-640, complete genomesingle-stranded binding protein1e-1685.1
NC_011206:123791:129170129170129664495Acidithiobacillus ferrooxidans ATCC 53993, complete genomesingle-strand binding protein1e-1684.7
NC_015850:1155376:115904611590461159552507Acidithiobacillus caldus SM-1 chromosome, complete genomeSingle-stranded DNA-binding protein2e-1684.7
NC_008786:4102606:412104441210444121547504Verminephrobacter eiseniae EF01-2, complete genomesingle-strand binding protein3e-1683.6
NC_017033:1052000:105671510567151057194480Frateuria aurantia DSM 6220 chromosome, complete genomesingle stranded DNA-binding protein1e-1582
NC_012913:1041969:105048810504881050979492Aggregatibacter aphrophilus NJ8700, complete genomesingle-stranded DNA-binding protein (SSB) (Helix-destabilizingprotein)3e-1580.5
NC_018012:1628364:163214916321491632661513Thiocystis violascens DSM 198 chromosome, complete genomesingle stranded DNA-binding protein7e-1579.3
NC_014029:331919:357329357329357760432Yersinia pestis Z176003 chromosome, complete genomesingle-strand binding protein9e-1579
NC_009337:320389:338254338254338760507Chlorobium phaeovibrioides DSM 265 chromosome, complete genomesingle-strand binding protein9e-1579
NC_014394:993465:9997469997461000177432Gallionella capsiferriformans ES-2 chromosome, complete genomesingle-strand binding protein1e-1479
NC_015559:3645181:366463836646383665357720Marinomonas posidonica IVIA-Po-181 chromosome, complete genomesingle-strand binding protein1e-1478.6
NC_005956:1111500:112359011235901124108519Bartonella henselae str. Houston-1, complete genomeSingle-strand binding protein (ssb)3e-1477
NC_010161:1501758:153187215318721532378507Bartonella tribocorum CIP 105476, complete genomesingle-strand DNA binding protein4e-1476.6
NC_009428:1827352:185933418593341859732399Rhodobacter sphaeroides ATCC 17025 chromosome, complete genomesingle-strand binding protein9e-1475.5
NC_011026:1284966:128874712887471289271525Chloroherpeton thalassium ATCC 35110, complete genomesingle-strand binding protein1e-1374.7
NC_002939:2337402:236821423682142368633420Geobacter sulfurreducens PCA, complete genomesingle-strand binding protein8e-1372.4
NC_002939:2315402:236821423682142368633420Geobacter sulfurreducens PCA, complete genomesingle-strand binding protein8e-1372.4
NC_011365:592256:595463595463596017555Gluconacetobacter diazotrophicus PAl 5 chromosome, complete genomessDNA-binding protein1e-1272
NC_011146:4505821:451190345119034512343441Geobacter bemidjiensis Bem, complete genomesingle-strand binding protein3e-1270.5
NC_013209:2782500:278467927846792785239561Acetobacter pasteurianus IFO 3283-01, complete genomesingle-strand DNA binding protein Ssb4e-1270.1
NC_017100:2782303:278447127844712785031561Acetobacter pasteurianus IFO 3283-03, complete genomessDNA-binding protein4e-1270.1
NC_017108:2779303:278180827818082782368561Acetobacter pasteurianus IFO 3283-12, complete genomessDNA-binding protein4e-1270.1
NC_017111:2779321:278182627818262782386561Acetobacter pasteurianus IFO 3283-32, complete genomessDNA-binding protein4e-1270.1
NC_017121:2781000:278322827832282783788561Acetobacter pasteurianus IFO 3283-07, complete genomessDNA-binding protein4e-1270.1
NC_017125:2782283:278445127844512785011561Acetobacter pasteurianus IFO 3283-22, complete genomessDNA-binding protein4e-1270.1
NC_017146:2782325:278449327844932785053561Acetobacter pasteurianus IFO 3283-26, complete genomessDNA-binding protein4e-1270.1
NC_017150:2689920:269242526924252692985561Acetobacter pasteurianus IFO 3283-01-42C, complete genomessDNA-binding protein4e-1270.1
NC_014972:2328228:235455523545552354980426Desulfobulbus propionicus DSM 2032 chromosome, complete genomesingle-strand-binding protein4e-1270.1
NC_015947:1142206:114816011481601148720561Burkholderia sp. JV3 chromosome, complete genomesingle-strand binding protein5e-1269.7
NC_011071:1178423:118191411819141182489576Stenotrophomonas maltophilia R551-3, complete genomesingle-strand binding protein5e-1269.7
NC_019907:539749:539749539749540249501Liberibacter crescens BT-1 chromosome, complete genomessDNA-binding protein9e-1268.9
NC_015593:2447844:246852724685272469099573Sphingobium chlorophenolicum L-1 chromosome chromosome 1, completesingle-strand binding protein1e-1168.6
NC_009720:4033983:404080740408074041283477Xanthobacter autotrophicus Py2, complete genomesingle-strand binding protein2e-1167.8
NC_014972:137184:142624142624143016393Desulfobulbus propionicus DSM 2032 chromosome, complete genomesingle-strand-binding protein3e-1167.4
NC_003919:3396136:341143234114323411974543Xanthomonas axonopodis pv. citri str. 306, complete genomesingle-strand DNA-binding protein3e-1167
NC_011060:2637893:264286226428622643338477Pelodictyon phaeoclathratiforme BU-1, complete genomesingle-strand binding protein5e-1166.6
NC_007798:652317:676858676858677313456Neorickettsia sennetsu str. Miyayama, complete genomesingle-strand binding protein5e-1166.2
NC_013009:689978:694793694793695248456Neorickettsia risticii str. Illinois, complete genomesingle-strand binding protein5e-1166.2
NC_015682:205900:243613243613244059447Thermodesulfobacterium sp. OPB45 chromosome, complete genomesingle-strand binding protein1e-1065.1
NC_010554:2646806:267667526766752677094420Proteus mirabilis HI4320, complete genomeplasmid-related single-stranded DNA-binding protein2e-1064.7
NC_006832:475290:481351481351481884534Ehrlichia ruminantium str. Welgevonden, complete genomeSingle-strand binding protein1e-0962
NC_009523:1025556:102906710290671029597531Roseiflexus sp. RS-1 chromosome, complete genomesingle-strand binding protein2e-0961.6
NC_010336:733751:744867744867745355489Francisella philomiragia subsp. philomiragia ATCC 25017, completesingle-strand DNA binding protein2e-0961.2
NC_015696:105748:115060115060115548489Francisella sp. TX077308 chromosome, complete genomeSingle-stranded DNA-binding protein2e-0961.2
NC_009615:1001744:100691810069181007322405Parabacteroides distasonis ATCC 8503 chromosome, complete genomesingle-strand binding protein4e-0856.6
NC_009482:87193:105696105696106070375Synechococcus sp. RCC307 chromosome, complete genomesingle-stranded DNA-binding protein5e-0856.2
NC_014935:1834569:184768618476861848189504Nitratifractor saLSUginis DSM 16511 chromosome, complete genomesingle-strand binding protein4e-0753.5
NC_007722:851129:864882864882865280399Erythrobacter litoralis HTCC2594, complete genomesingle-strand binding protein4e-0753.5
NC_009714:113975:122323122323122739417Campylobacter hominis ATCC BAA-381, complete genomesingle-strand binding protein family4e-0753.5
NC_014934:219000:219035219035219367333Cellulophaga algicola DSM 14237 chromosome, complete genomesingle-strand binding protein5e-0753.1
NC_012526:4462:117151171512608894Deinococcus deserti VCD115, complete genomeputative single-stranded DNA-binding protein1e-0651.6
NC_016809:1778000:178581017858101786244435Haemophilus influenzae 10810, complete genomessDNA-binding protein2e-0651.2
NC_009091:1514770:153679315367931537167375Prochlorococcus marinus str. MIT 9301, complete genomesingle-stranded DNA-binding protein2e-0651.2
NC_014922:1360000:137953613795361379970435Haemophilus influenzae F3047 chromosome, complete genomesingle-strand binding protein2e-0650.8
NC_007146:1405459:141575814157581416192435Haemophilus influenzae 86-028NP, complete genomeSingle-strand binding protein3e-0650.8
NC_014922:825396:836565836565836999435Haemophilus influenzae F3047 chromosome, complete genomesingle-stranded DNA-binding protein3e-0650.8
NC_009567:904922:917470917470917904435Haemophilus influenzae PittGG chromosome, complete genomehypothetical protein3e-0650.8
NC_007722:168937:173203173203173601399Erythrobacter litoralis HTCC2594, complete genomesingle-strand binding protein3e-0650.8
NC_013162:1130554:114808711480871148509423Capnocytophaga ochracea DSM 7271, complete genomesingle-strand binding protein4e-0650.1
NC_016510:4343:864186419063423Flavobacterium columnare ATCC 49512 chromosome, complete genomesingle-strand DNA-binding protein Ssb7e-0649.3