Pre_GI: BLASTP Hits

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Query: NC_008148:2231045:2238225 Rubrobacter xylanophilus DSM 9941, complete genome

Start: 2238225, End: 2238920, Length: 696

Host Lineage: Rubrobacter xylanophilus; Rubrobacter; Rubrobacteraceae; Rubrobacterales; Actinobacteria; Bacteria

General Information: Cellulose-degrading bacterium. This genus contains two species: Rubrobacter radiotolerans and Rubrobacter xylanophilus. These two species represent the oldest lineage (deepest branch) of the Actinobacteria and are distantly related to Mycobacteria and Streptomycetes. Both species are thermophilic and exhibit high tolerance to radiation. Very little research has been done on these organisms and little is known other than their taxonomic characterization. Rubrobacter xylanophilus was isolated from a thermally polluted industrial runoff in the United Kingdom. Some strains of this species are capable of degrading hemicellulose and xylan (polymers of plant origin), and could play a significant role in the degradation of these compounds in the wood and paper industry as well as in the environment.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_000854:564811:573589573589574260672Aeropyrum pernix K1, complete genomeU/G and T/G mismatch-specific DNA glycosylase7e-23107
NC_014160:801618:836046836046836699654Thermosphaera aggregans DSM 11486 chromosome, complete genomeHhH-GPD family protein3e-2099
NC_013946:2854219:287080528708052871797993Meiothermus ruber DSM 1279 chromosome, complete genomeA/G-specific adenine glycosylase7e-2097.4
NC_011831:1693935:170314817031481703819672Chloroflexus aggregans DSM 9485, complete genomeHhH-GPD family protein2e-1996.3
NC_016885:417661:424887424887425492606Pyrobaculum oguniense TE7 chromosome, complete genomeA/G-specific DNA glycosylase6e-1890.9
NC_017501:980848:9971129971129981521041Neisseria meningitidis 8013, complete genomeA/G-specific adenine glycosylase7e-1787.4
NC_003901:357394:372163372163372837675Methanosarcina mazei Go1, complete genomeT/G-specific DNA glycosylase2e-1686.3
NC_008536:2079052:211504121150412115700660Solibacter usitatus Ellin6076, complete genomehelix-hairpin-helix motif3e-1685.5
NC_007760:2175992:2190747219074721919581212Anaeromyxobacter dehalogenans 2CP-C, complete genomeA/G-specific adenine glycosylase5e-1684.7
NC_003116:1518110:1520242152024215212911050Neisseria meningitidis Z2491, complete genomeadenine glycosylase9e-1684
NC_017512:1294970:1296216129621612972561041Neisseria meningitidis WUE 2594, complete genomeA/G-specific adenine glycosylase9e-1683.6
NC_017513:1331623:1333723133372313347631041Neisseria meningitidis G2136 chromosome, complete genomeA/G-specific adenine glycosylase1e-1583.2
NC_017515:875500:8939208939208949601041Neisseria meningitidis M04-240196 chromosome, complete genomeA/G-specific adenine glycosylase1e-1583.2
NC_003112:1423528:1425619142561914266681050Neisseria meningitidis MC58, complete genomeA/G-specific adenine glycosylase1e-1583.2
NC_017505:1370128:1372226137222613732661041Neisseria meningitidis alpha710 chromosome, complete genomeadenine glycosylase1e-1583.2
NC_017514:863485:8823588823588833981041Neisseria meningitidis M01-240149 chromosome, complete genomeA/G-specific adenine glycosylase1e-1583.2
NC_017516:879834:9049449049449059931050Neisseria meningitidis H44/76 chromosome, complete genomeA/G-specific adenine glycosylase1e-1583.2
NC_017518:1449923:1452021145202114530611041Neisseria meningitidis NZ-05/33 chromosome, complete genomeA/G-specific adenine glycosylase1e-1583.2
NC_008767:1321129:1323283132328313243321050Neisseria meningitidis FAM18, complete genomeadenine glycosylase2e-1582.8
NC_010120:1313500:1314747131474713157961050Neisseria meningitidis 053442, complete genomeA/G-specific adenine glycosylase2e-1582.8
NC_017517:1409000:1410430141043014114701041Neisseria meningitidis M01-240355 chromosome, complete genomeA/G-specific adenine glycosylase2e-1582.4
NC_011891:2264853:2266786226678622679911206Anaeromyxobacter dehalogenans 2CP-1, complete genomeA/G-specific adenine glycosylase2e-1582.4
NC_011145:2190531:2192469219246921936681200Anaeromyxobacter sp. K, complete genomeA/G-specific adenine glycosylase3e-1582
NC_013016:1289975:1292073129207312931131041Neisseria meningitidis alpha14 chromosome, complete genomeA/G-specific adenine glycosylase4e-1581.6
NC_013592:956829:9855119855119866441134Dickeya dadantii Ech586, complete genomeA/G-specific adenine glycosylase6e-1580.9
NC_015677:3520524:3537720353772035387301011Ramlibacter tataouinensis TTB310 chromosome, complete genomeA/G-specific adenine glycosylase protein7e-1580.9
NC_015731:990000:9956459956459967301086Nitrosomonas sp. Is79A3 chromosome, complete genomeA/G-specific adenine glycosylase8e-1580.5
NC_020829:5174354:5178799517879951798661068Pseudomonas denitrificans ATCC 13867, complete genomeA/G-specific adenine glycosylase2e-1479
NC_009464:650997:658871658871659509639Uncultured methanogenic archaeon RC-I, complete genomeputative DNA glycosylase3e-1479
NC_013202:418500:429258429258430046789Halomicrobium mukohataei DSM 12286, complete genomeHhH-GPD family protein5e-1478.2
NC_014500:1066911:1097756109775610988471092Dickeya dadantii 3937 chromosome, complete genomeadenine DNA glycosylase1e-1376.6
NC_016818:3851542:3854574385457438556501077Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completeA/G-specific adenine glycosylase1e-1376.3
NC_014926:1381152:140723614072361407901666Thermovibrio ammonificans HB-1 chromosome, complete genomeHhH-GPD family protein2e-1375.9
NC_017047:3907854:3910242391024239113181077Rahnella aquatilis HX2 chromosome, complete genomeadenine DNA glycosylase3e-1375.5
NC_015061:3840463:3842851384285138439271077Rahnella sp. Y9602 chromosome, complete genomeA/G-specific adenine glycosylase3e-1375.5
NC_019964:3028469:305166130516613052290630Halovivax ruber XH-70, complete genomeA/G-specific DNA glycosylase4e-1375.1
NC_020302:2677617:267830526783052679186882Corynebacterium halotolerans YIM 70093 = DSM 44683, completehypothetical protein4e-1375.1
NC_019977:253895:253895253895254521627Methanomethylovorans hollandica DSM 15978, complete genomeputative endoIII-related endonuclease5e-1374.7
NC_013967:2641433:266923426692342669872639Haloferax volcanii DS2 chromosome, complete genomeA/G-specific adenine glycosylase5e-1374.7
NC_014761:74500:808058080581455651Oceanithermus profundus DSM 14977 chromosome, complete genomehhh-gpd family protein7e-1374.3
NC_013162:1130554:1148572114857211496241053Capnocytophaga ochracea DSM 7271, complete genomeA/G-specific adenine glycosylase6e-1374.3
NC_009439:4661102:4663324466332446643911068Pseudomonas mendocina ymp, complete genomeA/G-specific DNA-adenine glycosylase1e-1273.6
NC_010556:691498:6914986914986925141017Exiguobacterium sibiricum 255-15, complete genomeA/G-specific adenine glycosylase1e-1273.2
NC_010465:933488:9366159366159378741260Yersinia pseudotuberculosis YPIII, complete genomeA/G-specific adenine glycosylase1e-1273.2
NC_010634:3692321:3709311370931137105701260Yersinia pseudotuberculosis PB1/+, complete genomeA/G-specific adenine glycosylase2e-1273.2
NC_012522:4692260:470602047060204706925906Rhodococcus opacus B4, complete genomeputative adenine glycosylase2e-1272.8
NC_006155:3779381:3796473379647337975881116Yersinia pseudotuberculosis IP 32953, complete genomeA/G-specific adenine glycosylase.2e-1272.8
NC_014721:2135500:218887421888742189566693Caldicellulosiruptor kristjanssonii 177R1B chromosome, completehelix-hairpin-helix motif protein2e-1272.8
NC_005810:3964468:3967577396757739688241248Yersinia pestis biovar Microtus str. 91001, complete genomeadenine DNA glycosylase2e-1272.4
NC_004088:3661601:3678521367852136797681248Yersinia pestis KIM, complete genomeadenine glycosylase2e-1272.4
NC_008686:2080770:210031021003102101296987Paracoccus denitrificans PD1222 chromosome 1, complete sequenceHhH-GPD family protein2e-1272.4
NC_017265:854492:8576018576018587161116Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,adenine DNA glycosylase3e-1272.4
NC_003143:1033500:1050575105057510516901116Yersinia pestis CO92, complete genomeA/G-specific adenine glycosylase3e-1272.4
NC_008149:3529428:3546476354647635475941119Yersinia pestis Nepal516, complete genomeA/G-specific adenine glycosylase3e-1272
NC_008150:361224:3664523664523675701119Yersinia pestis Antiqua, complete genomeA/G-specific adenine glycosylase3e-1272
NC_009381:627685:6307936307936319111119Yersinia pestis Pestoides F chromosome, complete genomeadenine DNA glycosylase3e-1272
NC_014029:1001000:1004166100416610052841119Yersinia pestis Z176003 chromosome, complete genomeA/G-specific adenine glycosylase3e-1272
NC_017154:941065:9463119463119474291119Yersinia pestis D106004 chromosome, complete genomeA/G-specific adenine glycosylase3e-1272
NC_017160:945176:9482849482849494021119Yersinia pestis D182038 chromosome, complete genomeA/G-specific adenine glycosylase3e-1272
NC_017168:50391:5358453584547021119Yersinia pestis A1122 chromosome, complete genomeadenine DNA glycosylase3e-1272
NC_015977:2565922:2586238258623825874041167Roseburia hominis A2-183 chromosome, complete genomeA/G-specific DNA glycosylase5e-1271.6
NC_013166:194614:2128162128162138831068Kangiella koreensis DSM 16069, complete genomeA/G-specific adenine glycosylase4e-1271.6
NC_010159:138879:1572481572481583661119Yersinia pestis Angola, complete genomeA/G-specific adenine glycosylase4e-1271.6
NC_008268:4669530:468655846865584687538981Rhodococcus sp. RHA1, complete genomeprobable A/G-specific adenine DNA glycosylase4e-1271.6
NC_020418:1397112:1419744141974414207811038Morganella morganii subsp. morganii KT, complete genomeA/G-specific adenine glycosylase5e-1271.2
NC_011026:2624775:2631907263190726329891083Chloroherpeton thalassium ATCC 35110, complete genomeA/G-specific adenine glycosylase5e-1271.2
NC_018704:645843:6495766495766506401065Amphibacillus xylanus NBRC 15112, complete genomeA/G-specific adenine glycosylase6e-1270.9
NC_014109:27500:3219432194332971104Candidatus Riesia pediculicola USDA chromosome, complete genomeA/G-specific adenine glycosylase1e-1170.5
NC_019940:2236630:2254717225471722558321116Thioflavicoccus mobilis 8321 chromosome, complete genomeA/G-specific adenine glycosylase1e-1170.5
NC_009708:986918:9901519901519912661116Yersinia pseudotuberculosis IP 31758 chromosome, complete genomeadenine DNA glycosylase9e-1270.5
NC_016885:417661:421107421107421496390Pyrobaculum oguniense TE7 chromosome, complete genomeA/G-specific DNA glycosylase1e-1170.1
NC_015501:868909:891049891049891708660Porphyromonas asaccharolytica DSM 20707 chromosome, completeendonuclease III1e-1170.1
NC_020211:4484817:4484817448481744859171101Serratia marcescens WW4, complete genomeadenine DNA glycosylase2e-1169.3
NC_014033:2410331:2412864241286424138801017Prevotella ruminicola 23 chromosome, complete genomeA/G-specific adenine glycosylase3e-1168.9
NC_011145:4430501:4458178445817844601511974Anaeromyxobacter sp. K, complete genomeDNA-cytosine methyltransferase6e-1167.8
NC_007645:1336227:1353732135373213548981167Hahella chejuensis KCTC 2396, complete genomeA/G-specific adenine glycosylase6e-1167.8
NC_008789:1237969:1240978124097812420541077Halorhodospira halophila SL1, complete genomeA/G-specific adenine glycosylase5e-1167.8
NC_015953:3159234:316034331603433161245903Streptomyces sp. SirexAA-E chromosome, complete genomeHhH-GPD family protein8e-1167.4
NC_014958:557208:5620945620945631101017Deinococcus maricopensis DSM 21211 chromosome, complete genomeA/G-specific adenine glycosylase8e-1167.4
NC_009675:2177500:2178493217849321795931101Anaeromyxobacter sp. Fw109-5 chromosome, complete genomeA/G-specific adenine glycosylase1e-1067
NC_020541:3156500:3158753315875331598141062Rhodanobacter sp. 2APBS1, complete genomeA/G-specific DNA-adenine glycosylase1e-1066.6
NC_010730:1519458:153893315389331539562630Sulfurihydrogenibium sp. YO3AOP1, complete genomeendonuclease III1e-1066.6
NC_010577:1087092:1103846110384611048951050Xylella fastidiosa M23, complete genomeA/G-specific adenine glycosylase2e-1066.2
NC_004556:1076063:1093959109395910950081050Xylella fastidiosa Temecula1, complete genomeA/G-specific adenine glycosylase2e-1066.2
NC_013508:275081:2946172946172957051089Edwardsiella tarda EIB202, complete genomeA/G-specific adenine glycosylase2e-1066.2
NC_012779:261438:2776432776432787311089Edwardsiella ictaluri 93-146, complete genomeA/G-specific adenine glycosylase, putative2e-1065.9
NC_016070:743255:762383762383763057675Thermoproteus tenax Kra 1, complete genomeDNA endonuclease III3e-1065.5
NC_019673:359540:380408380408381277870Saccharothrix espanaensis DSM 44229 complete genomeHhH-GPD family protein5e-1064.7
NC_010278:1918000:1936009193600919371541146Actinobacillus pleuropneumoniae serovar 3 str. JL03 chromosome,A/G-specific adenine glycosylase6e-1064.3
NC_009053:1942973:1974422197442219755671146Actinobacillus pleuropneumoniae L20, complete genomeA/G-specific adenine glycosylase7e-1064.3
NC_010939:1986263:1999305199930520004501146Actinobacillus pleuropneumoniae serovar 7 str. AP76, completeA/G-specific adenine glycosylase8e-1063.9
NC_015474:72103:726657266573327663Pyrococcus sp. NA2 chromosome, complete genomeendonuclease III1e-0963.5
NC_014624:171394:1844351844351855231089Eubacterium limosum KIST612 chromosome, complete genomeA/G-specific adenine glycosylase1e-0963.2
NC_005835:1773482:179978517997851800447663Thermus thermophilus HB27, complete genomeendonuclease III2e-0963.2
NC_014033:1664500:168073716807371681372636Prevotella ruminicola 23 chromosome, complete genomeendonuclease III2e-0963.2
NC_011901:3072817:3087767308776730888131047Thioalkalivibrio sulfidophilus HL-EbGr7 chromosome, completeA/G-specific DNA-adenine glycosylase2e-0962.8
NC_013790:2030960:205264820526482053295648Methanobrevibacter ruminantium M1 chromosome, complete genomeendonuclease III Nth2e-0962.8
NC_010513:1128000:1143343114334311443921050Xylella fastidiosa M12 chromosome, complete genomeA/G-specific adenine glycosylase2e-0962.4
NC_009482:87193:1009261009261020861161Synechococcus sp. RCC307 chromosome, complete genomeA/G-specific DNA glycosylase3e-0962.4
NC_016510:4343:91069106101371032Flavobacterium columnare ATCC 49512 chromosome, complete genomeA/G-specific adenine glycosylase4e-0961.6
NC_015389:1858732:186041118604111861073663Coriobacterium glomerans PW2 chromosome, complete genomeendonuclease III; DNA-(apurinic or apyrimidinic site) lyase8e-0960.5
NC_012808:3972983:399367739936773994393717Methylobacterium extorquens AM1, complete genomeputative Endonuclease III (DNA-(apurinic or apyrimidinic site) lyase)9e-0960.5
NC_014958:2614399:263067826306782631352675Deinococcus maricopensis DSM 21211 chromosome, complete genomeendonuclease III1e-0860.5
NC_015514:3911655:393411339341133935021909Cellulomonas fimi ATCC 484 chromosome, complete genomeHhH-GPD family protein1e-0860.5
NC_015572:427732:4311994311994322661068Methylomonas methanica MC09 chromosome, complete genomeA/G-specific adenine glycosylase1e-0860.1
NC_002488:1812696:1814457181445718155301074Xylella fastidiosa 9a5c, complete genomeA/G-specific adenine glycosylase1e-0859.7
NC_012559:2663747:2663747266374726647841038Laribacter hongkongensis HLHK9, complete genomeMutY2e-0859.3
NC_016938:336000:3552363552363564111176Melissococcus plutonius DAT561 chromosome 1, complete genomeA/G-specific adenine glycosylase3e-0858.9
NC_018868:2935580:2934525293452529355831059Simiduia agarivorans SA1 = DSM 21679 chromosome, complete genomeA / G specific adenine glycosylase4e-0858.5
NC_012121:1444633:1467783146778314688411059Staphylococcus carnosus subsp. carnosus TM300, complete genomeputative A/G-specific adenine glycosylase6e-0857.8
NC_011060:459615:495148495148495786639Pelodictyon phaeoclathratiforme BU-1, complete genomeendonuclease III1e-0757
NC_008618:1804610:182313718231371823802666Bifidobacterium adolescentis ATCC 15703, complete genomeendonuclease III1e-0757
NC_013889:2603914:2607419260741926084741056Thioalkalivibrio sp. K90mix chromosome, complete genomeA/G-specific adenine glycosylase1e-0756.6
NC_015278:538500:555678555678556340663Aerococcus urinae ACS-120-V-Col10a chromosome, complete genomeendonuclease III2e-0756.2
NC_019907:1411124:1430287143028714313631077Liberibacter crescens BT-1 chromosome, complete genomeA/G-specific adenine glycosylase3e-0755.5
NC_019978:875941:878128878128878763636Halobacteroides halobius DSM 5150, complete genomeendonuclease III3e-0755.5
NC_016633:14000:342033420334850648Sphaerochaeta pleomorpha str. Grapes chromosome, complete genomeputative endoIII-related endonuclease3e-0755.1
NC_015681:1201926:120367712036771204330654Thermodesulfatator indicus DSM 15286 chromosome, complete genomeHhH-GPD family protein4e-0755.1
NC_020304:2107979:214497421449742145630657Desulfocapsa sulfexigens DSM 10523, complete genomeputative endonuclease III-like protein2e-0652.8
NC_014935:918855:937571937571938227657Nitratifractor saLSUginis DSM 16511 chromosome, complete genomeDNA-(apurinic or apyrimidinic site) lyase2e-0652.4