Pre_GI Gene

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Host: NC_009439 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_009439:4661102 Pseudomonas mendocina ymp, complete genome

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
466110246633272226AsmA family proteinQuickGO ontologyBLASTP
466332446643911068AG-specific DNA-adenine glycosylaseQuickGO ontologyBLASTP
46643884664660273hypothetical proteinBLASTP
4664813466488876tRNA-PheQuickGO ontologyBLASTP
466498646666801695hypothetical proteinBLASTP
46670904667548459hypothetical proteinBLASTP
46678404668328489ribonuclease HQuickGO ontologyBLASTP
46684724669200729hypothetical proteinBLASTP
46692104669491282hypothetical protein
46701464670841696resolvase domain-containing proteinQuickGO ontologyBLASTP
467127746723771101hypothetical proteinBLASTP
46723744672745372hypothetical proteinBLASTP
46731304673903774ABC transporter relatedQuickGO ontologyBLASTP
46739194674671753extracellular solute-binding proteinQuickGO ontologyBLASTP
46747264675421696polar amino acid ABC transporter inner membrane subunitQuickGO ontologyBLASTP
46754184676188771polar amino acid ABC transporter inner membrane subunitQuickGO ontologyBLASTP
467624046774781239hypothetical proteinBLASTP
46778684678209342hypothetical protein
467836946795081140acyltransferase 3QuickGO ontologyBLASTP
46795214680501981hypothetical protein
468050446819101407virulence factor MVIN family proteinQuickGO ontologyBLASTP