Pre_GI: BLASTP Hits

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Query: NC_007384:1763375:1780131 Shigella sonnei Ss046, complete genome

Start: 1780131, End: 1780601, Length: 471

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic in China in the 1950s. A leading cause of dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. This extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010468:2406387:2416103241610324199093807Escherichia coli ATCC 8739, complete genomeYD repeat protein1e-83307
NC_010468:1816359:1836693183669318404483756Escherichia coli ATCC 8739, complete genomeYD repeat protein3e-70263
AC_000091:3995233:4016988401698840212234236Escherichia coli W3110 DNA, complete genomerhsB element core protein RshB6e-68256
CP002185:3964500:3964633396463339688684236Escherichia coli W, complete genomeType I RHS protein5e-68256
CP002516:119935:1372051372051414404236Escherichia coli KO11, complete genomeYD repeat protein5e-68256
NC_016902:119935:1372051372051414404236Escherichia coli KO11FL chromosome, complete genomeYD repeat protein5e-68256
NC_011415:4006500:4006702400670240109374236Escherichia coli SE11 chromosome, complete genomeRhs core protein5e-68256
NC_009801:4073968:4074805407480540790404236Escherichia coli E24377A, complete genomeprotein rhsB precursor5e-68256
NC_012759:3648500:3648532364853236526654134Escherichia coli BW2952 chromosome, complete genomerhsA element core protein RshA7e-68255
NC_010468:111504:1285091285091326424134Escherichia coli ATCC 8739, complete genomeYD repeat protein7e-68255
NC_010468:3209326:3222525322252532267184194Escherichia coli ATCC 8739, complete genomeYD repeat protein8e-68255
NC_012967:3696877:3696877369687737010104134Escherichia coli B str. REL606 chromosome, complete genomerhsA element core protein RshA2e-67254
CP002185:794732:7993277993278035614235Escherichia coli W, complete genome2e-67254
CU928145:4131924:4132761413276141367263966Escherichia coli 55989 chromosome, complete genomerhsB element core protein RshB2e-67254
NC_011748:4131924:4132761413276141367263966Escherichia coli 55989, complete genomerhsB element core protein RshB2e-67254
AP010958:4707712:4717857471785747220264170Escherichia coli O103:H2 str. 12009 DNA, complete genomeRhs core protein with extension2e-67254
NC_013353:4707712:4717857471785747220264170Escherichia coli O103:H2 str. 12009, complete genomeRhs core protein with extension2e-67254
NC_012967:3549880:3549880354988035541154236Escherichia coli B str. REL606 chromosome, complete genomerhsB element core protein RshB1e-66251
NC_012947:248000:2870612870612912964236Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completehypothetical protein1e-66251
NC_002655:261236:2670792670792712934215Escherichia coli O157:H7 EDL933, complete genomehypothetical protein2e-65247
NC_002695:261235:2670782670782712924215Escherichia coli O157:H7 str. Sakai, complete genomeRhsG core protein with extension2e-65247
NC_011353:261220:2670632670632712954233Escherichia coli O157:H7 str. EC4115 chromosome, complete genomeRHS Repeat family protein2e-65247
NC_013008:261226:2670692670692713014233Escherichia coli O157:H7 str. TW14359 chromosome, complete genomehypothetical protein2e-65247
NC_013941:261094:2670212670212712534233Escherichia coli O55:H7 str. CB9615 chromosome, complete genome2e-65247
NC_007384:278810:2810272810272852354209Shigella sonnei Ss046, complete genomerhs core protein with extension4e-64243
NC_011205:1227373:1229589122958912338064218Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853hypothetical protein3e-64243
NC_007384:1763375:1771082177108217748853804Shigella sonnei Ss046, complete genomerhs core protein with extension7e-64242
NC_016822:1839739:1849435184943518536524218Shigella sonnei 53G, complete genomerhs core protein with extension1e-63241
NC_016831:1865681:1884050188405018873583309Salmonella enterica subsp. enterica serovar Gallinarum/pullorum1e-63241
NC_011741:256932:2628582628582670844227Escherichia coli IAI1 chromosome, complete genomeRhsG core protein with extension7e-63239
CU928160:256932:2628582628582670844227Escherichia coli IAI1 chromosome, complete genomeRhsG core protein with extension7e-63239
NC_016822:267758:2786032786032828204218Shigella sonnei 53G, complete genomerhs core protein with extension2e-62238
NC_011274:1129686:1137806113780611411143309Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91RHS family protein3e-62236
NC_011741:256932:2705612705612748144254Escherichia coli IAI1 chromosome, complete genomeputative Rhs Core protein5e-60229
CU928160:256932:2705612705612748144254Escherichia coli IAI1 chromosome, complete genomePutative Rhs Core protein5e-60229
NC_011274:1129686:1143020114302011471774158Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91RHS family protein1e-59228
NC_011149:1110642:1116901111690111210674167Salmonella enterica subsp. enterica serovar Agona str. SL483,protein RhsA8e-57219
NC_012947:126596:143427143427144299873Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeRhs family protein-like protein7e-44176
NC_008752:4086283:4089945408994540944174473Acidovorax avenae subsp. citrulli AAC00-1, complete genomeYD repeat protein3e-42170
NC_015138:4103457:4105200410520041096004401Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completeRHS repeat-associated core domain-containing protein1e-40165
NC_008752:4747376:4750529475052947555685040Acidovorax avenae subsp. citrulli AAC00-1, complete genomeYD repeat protein1e-36151
NC_008752:4147715:4162182416218241672155034Acidovorax avenae subsp. citrulli AAC00-1, complete genomeYD repeat protein2e-36150
NC_009800:3787320:3791487379148737928471361Escherichia coli HS, complete genome3e-32137
NC_015138:4175831:4185824418582441908665043Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completeRHS repeat-associated core domain-containing protein5e-32136
NC_015563:334942:3422533422533468904638Delftia sp. Cs1-4 chromosome, complete genomeRHS repeat-associated core domain-containing protein6e-26116
NC_010002:4890192:4900303490030349048894587Delftia acidovorans SPH-1, complete genomeYD repeat protein4e-26116
NC_015563:2656628:2662684266268426671204437Delftia sp. Cs1-4 chromosome, complete genomeRHS repeat-associated core domain-containing protein3e-25114
NC_012125:1632150:164574116457411645974234Salmonella enterica subsp. enterica serovar Paratyphi C strainRhsE3e-22103
NC_009656:4079319:4099703409970341036623960Pseudomonas aeruginosa PA7 chromosome, complete genomehypothetical protein1e-1685.5
NC_007005:5882205:5911246591124659154754230Pseudomonas syringae pv. syringae B728a, complete genomeYD repeat2e-1271.2
NC_007511:719493:7243637243637287034341Burkholderia sp. 383 chromosome 2, complete sequenceRhs family protein1e-1168.9
NC_015733:1793399:1798586179858618006222037Pseudomonas putida S16 chromosome, complete genome3e-1167.8
NC_011002:703194:7243577243577286044248Burkholderia cenocepacia J2315 chromosome 3, complete sequenceRHS-family protein4e-1167
NC_007511:2072838:2086776208677620910654290Burkholderia sp. 383 chromosome 2, complete sequenceRhs family protein4e-1167
NC_010501:2796000:2801626280162628058614236Pseudomonas putida W619, complete genomeYD repeat protein7e-1166.2
NC_005773:5734733:5751579575157957557844206Pseudomonas syringae pv. phaseolicola 1448A, complete genomeRHS family protein9e-1165.9
NC_010805:2432167:2445479244547924514245946Burkholderia multivorans ATCC 17616 chromosome 2, complete2e-1064.7
NC_010086:20876:2388023880298255946Burkholderia multivorans ATCC 17616 chromosome 2, completetype VI secretion system Vgr family protein2e-1064.7
NC_003198:331314:3313143313143353784065Salmonella enterica subsp. enterica serovar Typhi str. CT18,Rhs-family protein4e-1063.9
NC_017986:5605197:5606290560629056104924203Pseudomonas putida ND6 chromosome, complete genomeYD repeat-containing protein5e-1063.5
NC_010501:4311873:4315143431514343193034161Pseudomonas putida W619, complete genomeYD repeat protein5e-1063.5
NC_002947:3492379:3511330351133035154874158Pseudomonas putida KT2440, complete genomerhs-related protein4e-1063.5
NC_008752:3684739:3695033369503336997844752Acidovorax avenae subsp. citrulli AAC00-1, complete genomeYD repeat protein9e-1062.8
NC_009708:372422:3913353913353955914257Yersinia pseudotuberculosis IP 31758 chromosome, complete genomeRHS/YD repeat-containing protein1e-0962.4
NC_009708:372422:3856273856273898354209Yersinia pseudotuberculosis IP 31758 chromosome, complete genomeRHS/YD repeat-containing protein1e-0962.4
NC_010465:429095:4422674422674464394173Yersinia pseudotuberculosis YPIII, complete genomeYD repeat protein1e-0962.4
NC_017265:4265659:4271134427113442735272394Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,1e-0962.4
NC_003143:4006884:4020241402024140231052865Yersinia pestis CO92, complete genomehypothetical protein1e-0962.4
NC_008149:4053363:4067021406702140698852865Yersinia pestis Nepal516, complete genomehypothetical protein1e-0962.4
NC_009381:222735:2360712360712389352865Yersinia pestis Pestoides F chromosome, complete genomehypothetical protein1e-0962.4
NC_014029:3958811:3972168397216839750322865Yersinia pestis Z176003 chromosome, complete genomehypothetical protein1e-0962.4
NC_017154:3898925:3912282391228239151462865Yersinia pestis D106004 chromosome, complete genomehypothetical protein1e-0962.4
NC_017160:4073611:4087269408726940901332865Yersinia pestis D182038 chromosome, complete genomehypothetical protein1e-0962.4
NC_017168:1631052:1644409164440916472732865Yersinia pestis A1122 chromosome, complete genomehypothetical protein1e-0962.4
NC_005810:4469156:4483007448300744858982892Yersinia pestis biovar Microtus str. 91001, complete genomehypothetical protein9e-1062.4
NC_004088:266543:2802002802002830912892Yersinia pestis KIM, complete genomeRhs-like protein9e-1062.4
NC_015138:2110149:2113250211325021180044755Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completeRHS repeat-associated core domain-containing protein1e-0962
NC_006155:4302826:4307136430713643114044269Yersinia pseudotuberculosis IP 32953, complete genomehypothetical protein1e-0962
NC_016810:329849:3325213325213361233603Salmonella enterica subsp. enterica serovar Typhimurium strRhs family protein8e-0959.7
NC_016857:329849:3325213325213361233603Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74Rhs1 protein8e-0959.7
NC_011080:333121:3357993357993398784080Salmonella enterica subsp. enterica serovar Newport str. SL254,Rhs-family protein7e-0959.7
NC_003197:332086:3325513325513366454095Salmonella typhimurium LT2, complete genomeputative RHS-like protein7e-0959.7
NC_016856:332771:3332363332363373304095Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative RHS-like protein7e-0959.7
NC_016860:332087:3325523325523366464095Salmonella enterica subsp. enterica serovar Typhimurium strputative RHS-like protein7e-0959.7
NC_016863:332060:3325253325253366194095Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative RHS-like protein7e-0959.7
NC_017046:329847:3325253325253338201296Salmonella enterica subsp. enterica serovar Typhimurium str. 798Rhs-family protein (SPI-6 associated)7e-0959.7
NC_011205:329155:3318333318333355193687Salmonella enterica subsp. enterica serovar Dublin str. CT_020218537e-0959.7
NC_011094:334267:3347323347323384183687Salmonella enterica subsp. enterica serovar Schwarzengrund str1e-0858.9
NC_020209:4643901:4643901464390146482714371Pseudomonas poae RE*1-1-14, complete genomehypothetical protein3e-0857.4
NC_016514:2713834:2748218274821827526064389Enterobacter cloacae EcWSU1 chromosome, complete genomeRhsB9e-0855.8
NC_008027:3844355:3872005387200538767924788Pseudomonas entomophila L48, complete genomehypothetical protein1e-0755.5
NC_014121:1589389:1591543159154315959314389Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completehypothetical protein3e-0754.3
NC_010717:1551000:1563623156362315679094287Xanthomonas oryzae pv. oryzae PXO99A, complete genomeRhsD protein3e-0754.3
NC_010717:1551000:1552767155276715575064740Xanthomonas oryzae pv. oryzae PXO99A, complete genomeRHS Repeat family3e-0753.9
NC_014837:2709813:2722690272269027272134524Pantoea sp. At-9b chromosome, complete genomeYD repeat-containing protein4e-0753.9
NC_015379:6714545:6714545671454567189844440Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,hypothetical protein2e-0652
NC_013131:8029621:8039050803905080435374488Catenulispora acidiphila DSM 44928, complete genomeYD repeat protein1e-0652
NC_007952:1934249:1945900194590019504954596Burkholderia xenovorans LB400 chromosome 2, complete sequenceYD repeat protein1e-0652
NC_012125:326909:3269093269093316904782Salmonella enterica subsp. enterica serovar Paratyphi C strainRhs family protein2e-0651.6
NC_011083:338910:3416753416753463814707Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,Rhs-family protein2e-0651.2
NC_016582:6509792:6515356651535665198344479Streptomyces bingchenggensis BCW-1 chromosome, complete genomeRhs protein3e-0650.8
NC_008027:5576458:5586333558633355909974665Pseudomonas entomophila L48, complete genomehypothetical protein9e-0649.3
NC_007645:3870466:3912384391238439166224239Hahella chejuensis KCTC 2396, complete genomeRhs family protein1e-0549.3