Pre_GI: OUP Neighbours

Some Help

Query: NC_011205:329155 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853

D: 38.7596

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This is a bovine-adapted serovar that is genetically related to S. Enteritidis that lives in the bovine intestinal tract and can causes disease in humans. While rare in incidence, S. dublin infection classically produces a syndrome of sustained bacteremia with fever, resulting in high morbidity and mortality. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.

Number of Neighbours: 142




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



Select all Donors or Recipients for Query Island



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host Description Compositional Similarity Proposed Island FlowSubject Island D
NC_010465:429095Yersinia pseudotuberculosis YPIII, complete genome76.5288 %Subject ←→ Query29.1646
NC_005810:4469156Yersinia pestis biovar Microtus str. 91001, complete genome79.038 %Subject ←→ Query29.5112
NC_008149:4053363Yersinia pestis Nepal516, complete genome79.2678 %Subject ←→ Query30.0006
NC_004088:266543Yersinia pestis KIM, complete genome79.2647 %Subject ←→ Query30.0081
NC_011745:1055354*Escherichia coli ED1a chromosome, complete genome75.1899 %Subject ←→ Query30.2164
NC_003143:2778494Yersinia pestis CO92, complete genome75.0398 %Subject ←→ Query30.2293
NC_016863:2721826Salmonella enterica subsp. enterica serovar Typhimurium str. UK-179.2708 %Subject ←→ Query30.7584
NC_013941:5317424Escherichia coli O55:H7 str. CB9615 chromosome, complete genome76.4951 %Subject ←→ Query30.8609
NC_011745:2025725Escherichia coli ED1a chromosome, complete genome76.1183 %Subject ←→ Query31.1649
NC_016612:4823529Klebsiella oxytoca KCTC 1686 chromosome, complete genome75.1991 %Subject ←→ Query31.3367
NC_016857:2719779Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/7478.9767 %Subject ←→ Query31.43
NC_016810:2719779Salmonella enterica subsp. enterica serovar Typhimurium str78.9308 %Subject ←→ Query31.43
NC_013971:666730Erwinia amylovora ATCC 49946 chromosome, complete genome75.7782 %Subject ←→ Query31.4537
NC_016856:2773995Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S78.9124 %Subject ←→ Query31.5078
NC_008563:3119284Escherichia coli APEC O1, complete genome78.3915 %Subject ←→ Query31.9127
NC_011742:4962008Escherichia coli S88 chromosome, complete genome76.6636 %Subject ←→ Query32.4611
NC_013353:2134556*Escherichia coli O103:H2 str. 12009, complete genome78.318 %Subject ←→ Query32.8216
NC_013892:274297Xenorhabdus bovienii SS-2004 chromosome, complete genome75.2298 %Subject ←→ Query32.8965
NC_009708:372422Yersinia pseudotuberculosis IP 31758 chromosome, complete genome75.674 %Subject ←→ Query33.1886
NC_013941:1014386Escherichia coli O55:H7 str. CB9615 chromosome, complete genome78.0362 %Subject ←→ Query33.1965
NC_011283:942594Klebsiella pneumoniae 342 chromosome, complete genome75.1808 %Subject ←→ Query33.3475
NC_007384:1763375Shigella sonnei Ss046, complete genome79.6262 %Subject ←→ Query33.4012
NC_016860:2323017*Salmonella enterica subsp. enterica serovar Typhimurium str77.0098 %Subject ←→ Query33.5197
NC_016857:2325190*Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/7477.0006 %Subject ←→ Query33.5449
NC_016810:2325190*Salmonella enterica subsp. enterica serovar Typhimurium str77.0006 %Subject ←→ Query33.5449
NC_016856:2379027*Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S77.0098 %Subject ←→ Query33.6556
NC_011353:921500Escherichia coli O157:H7 str. EC4115 chromosome, complete genome77.6746 %Subject ←→ Query34.5194
CU928160:256932Escherichia coli IAI1 chromosome, complete genome84.1759 %Subject ←→ Query34.5956
NC_011741:256932Escherichia coli IAI1 chromosome, complete genome84.1759 %Subject ←→ Query34.5956
NC_013892:753307Xenorhabdus bovienii SS-2004 chromosome, complete genome76.0386 %Subject ←→ Query34.8067
NC_013364:2522888Escherichia coli O111:H- str. 11128, complete genome79.5619 %Subject ←→ Query34.9313
NC_017046:2324554*Salmonella enterica subsp. enterica serovar Typhimurium str. 79876.9976 %Subject ←→ Query35.0182
NC_013008:918215Escherichia coli O157:H7 str. TW14359 chromosome, complete genome78.943 %Subject ←→ Query35.1897
NC_016831:1865681Salmonella enterica subsp. enterica serovar Gallinarum/pullorum82.9473 %Subject ←→ Query35.6576
NC_011601:756885Escherichia coli O127:H6 str. E2348/69 chromosome, complete genome77.7512 %Subject ←→ Query35.8585
NC_011094:4442478Salmonella enterica subsp. enterica serovar Schwarzengrund str78.3395 %Subject ←→ Query36.096
NC_013941:2425233Escherichia coli O55:H7 str. CB9615 chromosome, complete genome78.943 %Subject ←→ Query36.1047
NC_011601:1077548Escherichia coli O127:H6 str. E2348/69 chromosome, complete genome77.1415 %Subject ←→ Query36.1989
NC_013961:3083816Erwinia amylovora, complete genome77.117 %Subject ←→ Query36.2172
NC_016845:3238507*Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,76.3021 %Subject ←→ Query36.3698
NC_004431:1352906Escherichia coli CFT073, complete genome76.875 %Subject ←→ Query36.4239
NC_002695:2158314Escherichia coli O157:H7 str. Sakai, complete genome75.8732 %Subject ←→ Query36.4725
AP010958:1472506Escherichia coli O103:H2 str. 12009 DNA, complete genome78.8051 %Subject ←→ Query36.7127
NC_013353:1472506Escherichia coli O103:H2 str. 12009, complete genome78.8051 %Subject ←→ Query36.7127
NC_011751:1377457Escherichia coli UMN026 chromosome, complete genome76.489 %Subject ←→ Query36.813
NC_011094:638552Salmonella enterica subsp. enterica serovar Schwarzengrund str77.4939 %Subject ←→ Query36.8525
NC_013941:1963523Escherichia coli O55:H7 str. CB9615 chromosome, complete genome77.2488 %Subject ←→ Query36.9893
NC_016863:2324293*Salmonella enterica subsp. enterica serovar Typhimurium str. UK-176.3327 %Subject ←→ Query37.0731
NC_013364:863209Escherichia coli O111:H- str. 11128, complete genome78.0729 %Subject ←→ Query37.1558
NC_013008:2889743Escherichia coli O157:H7 str. TW14359 chromosome, complete genome75.6587 %Subject ←→ Query37.196
NC_002695:2893951Escherichia coli O157:H7 str. Sakai, complete genome75.769 %Subject ←→ Query37.275
NC_009648:3476000Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome77.2794 %Subject ←→ Query37.4593
NC_011750:1931384Escherichia coli IAI39 chromosome, complete genome76.5962 %Subject ←→ Query37.6581
NC_013361:2169948Escherichia coli O26:H11 str. 11368 chromosome, complete genome75.0582 %Subject ←→ Query37.7614
NC_016822:1839739Shigella sonnei 53G, complete genome79.0686 %Subject ←→ Query37.9198
NC_013008:1761165Escherichia coli O157:H7 str. TW14359 chromosome, complete genome78.557 %Subject ←→ Query38.2113
NC_013361:1896446Escherichia coli O26:H11 str. 11368 chromosome, complete genome76.8658 %Subject ←→ Query38.2296
NC_002655:1909139Escherichia coli O157:H7 EDL933, complete genome76.6207 %Subject ←→ Query38.4667
NC_011353:1761977Escherichia coli O157:H7 str. EC4115 chromosome, complete genome78.0882 %Subject ←→ Query38.5032
NC_011750:919953Escherichia coli IAI39 chromosome, complete genome75.2574 %Subject ←→ Query38.6045
NC_011742:585908Escherichia coli S88 chromosome, complete genome77.9197 %Subject ←→ Query38.828
NC_011353:261220Escherichia coli O157:H7 str. EC4115 chromosome, complete genome83.7408 %Subject ←→ Query38.9884
NC_014228:2883500Xenorhabdus nematophila ATCC 19061, complete genome75.1471 %Subject ←→ Query39.0811
NC_013008:261226Escherichia coli O157:H7 str. TW14359 chromosome, complete genome83.7592 %Subject ←→ Query39.1965
NC_013941:261094Escherichia coli O55:H7 str. CB9615 chromosome, complete genome84.2034 %Subject ←→ Query39.1987
NC_016822:267758Shigella sonnei 53G, complete genome80.3064 %Subject ←→ Query39.2695
NC_011274:1129686Salmonella enterica subsp. enterica serovar Gallinarum str. 287/9181.9914 %Subject ←→ Query39.5488
NC_013361:1593543Escherichia coli O26:H11 str. 11368 chromosome, complete genome76.8689 %Subject ←→ Query40.2481
NC_014228:3282500Xenorhabdus nematophila ATCC 19061, complete genome75.9896 %Subject ←→ Query41.4806
NC_009778:3832000Enterobacter sakazakii ATCC BAA-894, complete genome76.6881 %Subject ←→ Query45.4902
NC_009648:2465613*Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome76.4614 %Subject Query50.7802