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Query: NC_010723:1379256:1381624 Clostridium botulinum E3 str. Alaska E43, complete genome

Start: 1381624, End: 1382097, Length: 474

Host Lineage: Clostridium botulinum; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: This strain was probably isolated from salmon eggs associated with a foodborne case of botulism in Alaska, however the exact details are not available. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. This organism produces one of the most potent and deadly neurotoxins known, a botulinum toxin that prevents the release of acetylcholine at the neuromuscular junction, thereby inhibiting muscle contraction and causing paralysis. In most cases the diseased person dies of asphyxiation as a result of paralysis of chest muscles involved in breathing. The spores are heat-resistant and can survive in inadequately heated, prepared, or processed foods. Spores germinate under favorable conditions (anaerobiosis and substrate-rich environment) and bacteria start propagating very rapidly, producing the toxin.Botulinum toxin, and C. botulinum cells, has been found in a wide variety of foods, including canned ones. Almost any food that has a high pH (above 4.6) can support growth of the bacterium. Honey is the most common vehicle for infection in infants. Food poisoning through C. botulinum is the most frequent type of infection caused by this bacterium. The wound botulism that occurs when C. botulinum infects an individual via an open wound is much rarer and is very similar to tetanus disease. There are several types of botulinum toxin known (type A through type F), all of them being neurotoxic polypeptides. The most common and widely distributed are strains and serovars of C. botulinum that produce type A toxin.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009699:1122000:114293611429361143757822Clostridium botulinum F str. Langeland chromosome, complete genomeMerR family transcriptional regulator5e-21100
NC_020418:14965:164191641917276858Morganella morganii subsp. morganii KT, complete genomeTranscriptional regulator, MerR family5e-2096.7
UCMB5137:2054735:207424220742422075075834Bacillus atrophaeus UCMB-5137BmrR protein1e-1995.5
NC_017179:3984000:398807339880733988930858Clostridium difficile BI1, complete genomeMerR family transcriptional regulator2e-1891.7
NC_013315:3978495:398005339800533980910858Clostridium difficile CD196 chromosome, complete genomeMerR family transcriptional regulator2e-1891.7
NC_009089:4177117:418251841825184183375858Clostridium difficile 630, complete genomeMerR-family transcriptional regulator2e-1891.7
NC_016047:2658000:268882426888242689669846Bacillus subtilis subsp. spizizenii TU-B-10 chromosome, completeBmrR protein2e-1891.3
UCMB5137:3660165:367585036758503676662813Bacillus atrophaeus UCMB-5137putative transcriptional regulator of efflux transporter1e-1789
NC_017195:2498113:254309625430962543944849Bacillus subtilis subsp. subtilis str. RO-NN-1 chromosome, completeBmrR6e-1786.7
NC_006322:2658587:267322126732212674066846Bacillus licheniformis ATCC 14580, complete genomeBmrR9e-1785.9
NC_006270:2657726:267236126723612673206846Bacillus licheniformis ATCC 14580, complete genometranscriptional regulator9e-1785.9
NC_016047:2658000:268162426816242682445822Bacillus subtilis subsp. spizizenii TU-B-10 chromosome, completemultidrug-efflux transporter 2 regulator2e-1478.2
NC_014976:684000:699900699900700721822Bacillus subtilis BSn5 chromosome, complete genometranscriptional regulator2e-1478.2
NC_017195:2498113:252272125227212523542822Bacillus subtilis subsp. subtilis str. RO-NN-1 chromosome, completemultidrug-efflux transporter 2 regulator2e-1478.2
NC_020244:2509000:253068625306862531507822Bacillus subtilis XF-1, complete genometranscriptional regulator3e-1477.8
NC_019896:1483073:150976115097611510582822Bacillus subtilis subsp. subtilis str. BSP1 chromosome, completeMultidrug-efflux transporter 2 regulator3e-1477.4
NC_000964:2702376:271526127152612716082822Bacillus subtilis subsp. subtilis str. 168, complete genometranscriptional regulator3e-1477.4
NC_016633:14000:202342023420998765Sphaerochaeta pleomorpha str. Grapes chromosome, complete genomeputative transcriptional regulator1e-1375.5
NC_010001:1745089:175040017504001751233834Clostridium phytofermentans ISDg, complete genometranscriptional regulator, MerR family2e-1374.7
NC_014479:2505823:252323425232342524088855Bacillus subtilis subsp. spizizenii str. W23 chromosome, completetranscriptional regulator6e-1373.2
UCMB5137:1396603:141244914124491413276828Bacillus atrophaeus UCMB-5137transcriptional regulator1e-1272.4
NC_014639:1358597:138278313827831383610828Bacillus atrophaeus 1942 chromosome, complete genometranscriptional regulator2e-1271.6
CP002207:1358597:138278313827831383610828Bacillus atrophaeus 1942, complete genometranscriptional regulator2e-1271.6
NC_010001:109893:130233130233131072840Clostridium phytofermentans ISDg, complete genometranscriptional regulator, MerR family4e-1270.5
NC_014633:655693:656410656410657219810Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequencetranscriptional regulator, MerR family6e-1166.6
NC_014221:792363:806617806617807441825Truepera radiovictrix DSM 17093 chromosome, complete genometranscriptional regulator, MerR family5e-1166.6
NC_016584:2244966:227049422704942271303810Desulfosporosinus orientis DSM 765 chromosome, complete genometranscriptional regulator9e-1165.9
NC_010723:1465097:146844114684411469277837Clostridium botulinum E3 str. Alaska E43, complete genometranscriptional regulatory protein1e-1065.5
NC_010674:1496500:149822114982211499057837Clostridium botulinum B str. Eklund 17B, complete genometranscriptional regulatory protein1e-1065.5
NC_016584:4325964:432874343287434329555813Desulfosporosinus orientis DSM 765 chromosome, complete genometranscriptional regulator2e-1065.1
NC_016641:3058571:307297930729793073785807Paenibacillus terrae HPL-003 chromosome, complete genomeMerR family transcriptional regulator2e-1064.7
NC_008712:250240:253388253388253939552Arthrobacter aurescens TC1 plasmid TC1, complete sequenceputative Transcriptional regulator, MerR family7e-1063.2
NC_013316:4095905:412571441257144126526813Clostridium difficile R20291, complete genomeMerR-family transcriptional regulator6e-1063.2
NC_013315:4015119:404492840449284045740813Clostridium difficile CD196 chromosome, complete genomeMerR family transcriptional regulator6e-1063.2
NC_017179:4023139:405294840529484053760813Clostridium difficile BI1, complete genomeMerR family transcriptional regulator6e-1063.2
NC_013406:3672857:371383337138333714651819Paenibacillus sp. Y412MC10 chromosome, complete genomeMerR family transcriptional regulator8e-1062.8
NC_009434:695582:762792762792763244453Pseudomonas stutzeri A1501, complete genometranscriptional regulator CadR3e-0961.2
NC_014624:2569604:258018525801852580961777Eubacterium limosum KIST612 chromosome, complete genomehypothetical protein4e-0960.5
NC_009077:5286275:528973352897335290563831Mycobacterium sp. JLS, complete genomeputative transcriptional regulator, MerR family5e-0960.1
NC_015146:144565:162656162656163048393Arthrobacter phenanthrenivorans Sphe3 plasmid pASPHE301, completetranscriptional regulator7e-0959.7
NC_014910:242845:259708259708260163456Alicycliphilus denitrificans BC chromosome, complete genomecd(ii)/pb(ii)-responsive transcriptional regulator7e-0959.7
NC_020911:3475096:347754534775453477955411Octadecabacter antarcticus 307, complete genomeputative HTH-type transcriptional regulator7e-0959.7
NC_011753:3088952:310870531087053109169465Vibrio splendidus LGP32 chromosome 1, complete genometranscriptional regulator1e-0858.5
NC_016048:797762:800661800661801476816Oscillibacter valericigenes Sjm18-20, complete genomeputative MerR family transcriptional regulator1e-0858.5
NC_011663:2568190:258565425856542586055402Shewanella baltica OS223 chromosome, complete genomeMerR family transcriptional regulator2e-0858.2
NC_013159:3858425:387858238785823879541960Saccharomonospora viridis DSM 43017, complete genomepredicted transcriptional regulator2e-0858.2
NC_015660:3518931:355621435562143556987774Geobacillus thermoglucosidasius C56-YS93 chromosome, completeMerR family transcriptional regulator2e-0857.8
NC_008529:887008:914122914122914553432Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365, completePredicted transcriptional regulator3e-0857.4
NC_008529:906576:914122914122914553432Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365, completePredicted transcriptional regulator3e-0857.4
NC_008529:887008:944865944865945296432Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365, completePredicted transcriptional regulator3e-0857.4
NC_008529:906576:944865944865945296432Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365, completePredicted transcriptional regulator3e-0857.4
NC_015589:38418:474844748448287804Desulfotomaculum ruminis DSM 2154 chromosome, complete genomeregulatory protein MerR4e-0857
NC_009138:1518315:153114315311431531580438Herminiimonas arsenicoxydans, complete genomeputative Bacterial regulatory protein, MerR6e-0856.6
NC_016935:3103430:311255631125563112909354Paenibacillus mucilaginosus 3016 chromosome, complete genomehypothetical protein6e-0856.6
NC_009495:2244774:226237822623782263208831Clostridium botulinum A str. ATCC 3502 chromosome, complete genomeMerR family transcriptional regulator6e-0856.6
NC_009697:2173000:219102021910202191850831Clostridium botulinum A str. ATCC 19397 chromosome, completeMerR family transcriptional regulator6e-0856.6
NC_009698:2171151:219123921912392192069831Clostridium botulinum A str. Hall chromosome, complete genomeMerR family transcriptional regulator6e-0856.6
NC_007498:1848437:186231018623101862723414Pelobacter carbinolicus DSM 2380, complete genomeputative heavy metal regulator HmrR5e-0856.6
NC_011312:3060371:307927830792783079697420Aliivibrio salmonicida LFI1238 chromosome chromosome 1, completetranscriptional regulator8e-0856.2
NC_012483:1408500:144328314432831443693411Acidobacterium capsulatum ATCC 51196, complete genometranscriptional regulator, MerR family8e-0856.2
NC_004557:1553000:156846115684611569303843Clostridium tetani E88, complete genometranscriptional regulatory protein8e-0856.2
NC_016627:2593242:259685025968502597614765Clostridium clariflavum DSM 19732 chromosome, complete genomeputative transcriptional regulator1e-0755.5
NC_013757:2630000:263326726332672634079813Geodermatophilus obscurus DSM 43160, complete genometranscriptional regulator, MerR family1e-0755.5
NC_011138:3182807:319814931981493198544396Alteromonas macleodii 'Deep ecotype', complete genomeHg(II)-responsive transcriptional regulator2e-0755.1
NC_019896:17873:404364043641140705Bacillus subtilis subsp. subtilis str. BSP1 chromosome, completetranscriptional regulator2e-0755.1
NC_008702:1432952:147196814719681472363396Azoarcus sp. BH72, complete genomeputative regulatory protein2e-0755.1
NC_013446:3520500:352455735245573524946390Comamonas testosteroni CNB-2, complete genometranscriptional regulator, MerR family2e-0755.1
NC_012778:207415:208340208340208777438Eubacterium eligens ATCC 27750, complete genomeMerR family transcriptional regulator, mercuric resistance operon regulatory protein2e-0754.7
NC_013508:3387272:338925733892573389718462Edwardsiella tarda EIB202, complete genomezinc-responsive transcriptional regulator2e-0754.7
NC_010519:1963256:198429019842901984688399Haemophilus somnus 2336 chromosome, complete genomeMerR family transcriptional regulator3e-0754.3
NC_017316:1840462:185294218529421853757816Enterococcus faecalis OG1RF chromosome, complete genomeMerR family transcriptional regulator3e-0753.9
NC_018720:993869:101806510180651018868804Bifidobacterium asteroides PRL2011 chromosome, complete genometranscriptional regulator, MerR family, with TipAS antibiotic-recognition domain4e-0753.9
NC_021182:3525523:355052435505243550982459Clostridium pasteurianum BC1, complete genomeputative transcriptional regulator4e-0753.9
NC_007907:1940000:194411719441171944872756Desulfitobacterium hafniense Y51, complete genomehypothetical protein7e-0753.1
NC_011830:3025437:303125230312523032007756Desulfitobacterium hafniense DCB-2, complete genometranscriptional regulator, MerR family7e-0753.1
CP002185:3627992:365167436516743652099426Escherichia coli W, complete genomeDNA-binding transcriptional activator in response to Zn(II)7e-0753.1
NC_006055:183823:200442200442200921480Mesoplasma florum L1, complete genomeHTH transcriptional regulator merR family7e-0753.1
NC_010602:2244729:227620322762032276586384Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'MerR family transcriptional regulator6e-0753.1
NC_010602:2244729:231391023139102314293384Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'MerR family transcriptional regulator6e-0753.1
NC_010842:2310756:231929623192962319679384Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)' chromosomeSoxR-related transcriptional regulator6e-0753.1
NC_010842:2250119:228158922815892281972384Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)' chromosomeSoxR-related transcriptional regulator6e-0753.1
NC_004129:2609189:262818226281822628571390Pseudomonas fluorescens Pf-5, complete genometranscriptional regulator, MerR family6e-0753.1
NC_016616:1091606:109800110980011098429429Dechlorosoma suillum PS chromosome, complete genomeCu(I)-responsive transcriptional regulator1e-0652.4
NC_011898:3159411:317709831770983177919822Clostridium cellulolyticum H10, complete genometranscriptional regulator, MerR family1e-0652.4
NC_011138:3182807:320451732045173204903387Alteromonas macleodii 'Deep ecotype', complete genomeHg(II)-responsive transcriptional regulator1e-0652.4
NC_013170:917177:936315936315937181867Cryptobacterium curtum DSM 15641, complete genome1e-0652.4
NC_021184:1257722:127604512760451276479435Desulfotomaculum gibsoniae DSM 7213, complete genomeputative transcriptional regulator1e-0652.4
NC_016048:4163225:419321241932124194036825Oscillibacter valericigenes Sjm18-20, complete genomeputative MerR family transcriptional regulator1e-0652
NC_009338:955195:975815975815976687873Mycobacterium gilvum PYR-GCK chromosome, complete genomeMerR family transcriptional regulator1e-0652
NC_014479:509919:517484517484517843360Bacillus subtilis subsp. spizizenii str. W23 chromosome, completetranscription regulator2e-0652
NC_009668:529175:531374531374531790417Ochrobactrum anthropi ATCC 49188 chromosome 2, complete sequenceMerR family transcriptional regulator2e-0652
NC_004193:375416:406314406314407078765Oceanobacillus iheyensis HTE831, complete genometranscriptional activator of multidrug-efflux transporters3e-0651.2
NC_003909:4854379:486700248670024867763762Bacillus cereus ATCC 10987, complete genometranscriptional regulator, MerR family3e-0651.2
NC_011658:4616933:463351046335104634280771Bacillus cereus AH187 chromosome, complete genomeMerR family transcriptional regulator3e-0651.2
NC_016771:4569941:458727545872754588045771Bacillus cereus NC7401, complete genomeMerR family transcriptional regulator3e-0651.2
NC_003909:4614789:463159846315984632368771Bacillus cereus ATCC 10987, complete genometranscriptional regulator, MerR family2e-0651.2
NC_017208:5124333:513829351382935139048756Bacillus thuringiensis serovar chinensis CT-43 chromosome, completeMerR family transcriptional regulator2e-0651.2
NC_008573:195317:203557203557203949393Shewanella sp. ANA-3 plasmid 1, complete sequencetranscriptional regulator, MerR family3e-0650.8
NC_017506:93494:947149471495127414Marinobacter adhaerens HP15 chromosome, complete genomeMerR family transcriptional regulator3e-0650.8
NC_013282:3962188:398362139836213984046426Cronobacter turicensis, complete genomeHTH-type transcriptional regulator zntR3e-0650.8
NC_004193:375416:451725451725452558834Oceanobacillus iheyensis HTE831, complete genometranscriptional activator of multidrug-efflux transporter4e-0650.4
NC_014171:4959248:497076149707614971522762Bacillus thuringiensis BMB171 chromosome, complete genomeMerR family transcriptional regulator5e-0650.4
NC_004722:5057825:506977350697735070537765Bacillus cereus ATCC 14579, complete genomeTranscriptional regulator, MerR family6e-0650.1
NC_011660:2541632:254267125426712543039369Listeria monocytogenes HCC23 chromosome, complete genomeMerR family transcriptional regulator6e-0650.1
NC_016627:3158353:317921431792143180050837Clostridium clariflavum DSM 19732 chromosome, complete genomeputative transcriptional regulator6e-0650.1
NC_020291:4357425:4357425435742543586241200Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomemethylase involved in ubiquinone/menaquinone biosynthesis6e-0650.1
NC_011772:5021404:503538050353805036141762Bacillus cereus G9842, complete genometranscriptional regulator, MerR family7e-0649.7
NC_008347:174000:190633190633191043411Maricaulis maris MCS10, complete genomeputative transcriptional regulator, MerR family7e-0649.7
NC_006274:4940922:495250449525044953268765Bacillus cereus E33L, complete genometranscriptional regulator, MerR family; possible drug/antibiotic resistance protein9e-0649.3
NC_005957:4883306:489628248962824897046765Bacillus thuringiensis serovar konkukian str. 97-27, completetranscriptional regulator, MerR family; possible drug/antibiotic resistance protein9e-0649.3
UCMB5137:3660165:366414436641443664878735Bacillus atrophaeus UCMB-5137hypothetical protein1e-0549.3
NC_016771:4859040:487159348715934872354762Bacillus cereus NC7401, complete genomeMerR family transcriptional regulator1e-0549.3
NC_011969:4841358:485391248539124854673762Bacillus cereus Q1 chromosome, complete genomeMerR family transcriptional regulator1e-0549.3
NC_011658:4904156:491927049192704920031762Bacillus cereus AH187 chromosome, complete genomeMerR family transcriptional regulator1e-0549.3
NC_015690:1818333:189300718930071893480474Paenibacillus mucilaginosus KNP414 chromosome, complete genomeMerR family transcriptional regulator9e-0649.3
NC_016935:2347691:242275624227562423229474Paenibacillus mucilaginosus 3016 chromosome, complete genomeMerR family transcriptional regulator9e-0649.3
NC_011725:5075285:508723550872355087990756Bacillus cereus B4264 chromosome, complete genomeMerR family transcriptional regulator9e-0649.3
NC_007530:4877500:489207148920714892832762Bacillus anthracis str. 'Ames Ancestor', complete genometranscriptional regulator, merr family9e-0649.3
NC_003997:4876415:489194548919454892706762Bacillus anthracis str. Ames, complete genometranscriptional regulator, MerR family9e-0649.3
NC_012581:4882525:489439448943944895155762Bacillus anthracis str. CDC 684 chromosome, complete genomeMerR family transcriptional regulator9e-0649.3
NC_012659:4877410:489197148919714892732762Bacillus anthracis str. A0248, complete genometranscriptional regulator, MerR family9e-0649.3
NC_013552:1240073:125037812503781250806429Dehalococcoides sp. VS, complete genometranscriptional regulator MerR family CueR domain protein9e-0649.3
NC_005945:4877752:489328248932824894046765Bacillus anthracis str. Sterne, complete genometranscriptional regulator, MerR family9e-0649.3
NC_011773:4940921:495285549528554953616762Bacillus cereus AH820 chromosome, complete genomeMerR family transcriptional regulator1e-0549.3