Pre_GI Gene

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Host: NC_004129 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_004129:2609189 Pseudomonas fluorescens Pf-5, complete genome

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
260918926105651377glutamine synthetaseQuickGO ontologyBLASTP
261059926120891491aldehyde dehydrogenase family proteinQuickGO ontologyBLASTP
261214526134251281D-amino acid oxidase family proteinQuickGO ontologyBLASTP
26136942614242549DNA-binding proteinQuickGO ontologyBLASTP
26143922615327936hypothetical proteinBLASTP
26164062617380975quinone oxidoreductaseQuickGO ontologyBLASTP
26173772618303927transcriptional regulator LysR familyQuickGO ontologyBLASTP
26212012621479279hypothetical proteinBLASTP
262167626231901515oxidoreductase 2OG-FeII oxygenase family familyQuickGO ontologyBLASTP
26232962623904609transcriptional regulator TetR familyQuickGO ontology
26239012624587687hypothetical proteinBLASTP
26252832626014732hypothetical protein
26260162626915900hypothetical protein
262703726281071071hypothetical proteinBLASTP
26281822628571390transcriptional regulator MerR familyQuickGO ontologyBLASTP
26293922629574183lipoprotein putativeQuickGO ontology
26295892630353765glutamine ABC transporter ATP-binding proteinQuickGO ontologyBLASTP
26303502631009660amino acid ABC transporterQuickGO ontologyBLASTP
26310192631666648amino acid ABC transporter permease proteinQuickGO ontologyBLASTP
26317302632518789amino acid ABC transporter periplasmic amino acid-binding proteinQuickGO ontologyBLASTP