Pre_GI: BLASTP Hits

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Query: NC_004129:3123000:3127308 Pseudomonas fluorescens Pf-5, complete genome

Start: 3127308, End: 3128099, Length: 792

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008027:3844355:386445738644573865245789Pseudomonas entomophila L48, complete genometranscriptional regulator, LuxR family5e-130463
NC_015379:3175500:318305931830593183796738Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,putative response regulator, NarL family1e-125448
NC_016830:3697173:370346837034683703962495Pseudomonas fluorescens F113 chromosome, complete genomeLuxR family transcriptional regulator1e-78293
NC_002947:4362271:437030543703054371102798Pseudomonas putida KT2440, complete genometranscriptional regulator, LuxR family2e-68258
NC_008027:3844355:386009638600963860908813Pseudomonas entomophila L48, complete genometranscriptional regulator, LuxR family1e-63243
NC_002947:4167500:423938642393864240285900Pseudomonas putida KT2440, complete genometranscriptional regulator, LuxR family9e-28124
NC_009672:30000:325033250333291789Ochrobactrum anthropi ATCC 49188 plasmid pOANT04, completeresponse regulator receiver protein2e-25115
NC_016628:1190366:119468511946851195527843Vibrio furnissii NCTC 11218 chromosome 2, complete sequencetranscriptional regulator, LuxR family1e-1790.1
NC_015637:819233:824159824159824977819Vibrio anguillarum 775 chromosome chromosome II, complete sequenceLysR family transcriptional regulator3e-1479
NC_015186:2197236:220374422037442204640897Acidiphilium multivorum AIU301, complete genomeLuxR family transcriptional regulator9e-1477.4
NC_007761:57199:709957099571777783Rhizobium etli CFN 42, complete genomeprobable transcriptional regulator protein, LuxR family2e-0962.8
NC_010994:57362:752167521675998783Rhizobium etli CIAT 652, complete genomeprobable transcriptional regulator protein, LuxR family2e-0962.8
NC_009523:585367:6023956023956038101416Roseiflexus sp. RS-1 chromosome, complete genomeresponse regulator receiver protein1e-0757
NC_008800:1300500:130498713049871305673687Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,LuxR family transcriptional regulatory protein2e-0756.6
NC_010473:498252:502403502403503035633Escherichia coli str. K-12 substr. DH10B, complete genomepredicted DNA-binding transcriptional regulator2e-0756.6
AC_000091:558920:563071563071563703633Escherichia coli W3110 DNA, complete genomepredicted DNA-binding transcriptional regulator2e-0756.6
NC_000913:558920:563071563071563703633Escherichia coli K12, complete genomepredicted DNA-binding transcriptional regulator2e-0756.6
NC_011415:600375:607365607365608012648Escherichia coli SE11 chromosome, complete genometranscriptional regulator FimZ2e-0756.6
NC_012759:461680:465831465831466463633Escherichia coli BW2952 chromosome, complete genometranscriptional regulator FimZ2e-0756.6
NC_011751:643976:643976643976644608633Escherichia coli UMN026 chromosome, complete genometranscriptional regulator FimZ2e-0756.6
NC_012947:3231893:324881132488113249443633Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completetranscriptional regulator FimZ2e-0756.6
NC_012967:531000:535962535962536594633Escherichia coli B str. REL606 chromosome, complete genometranscriptional regulator FimZ2e-0756.6
NC_011750:527470:531629531629532261633Escherichia coli IAI39 chromosome, complete genometranscriptional regulator FimZ2e-0756.6
NC_013501:1140390:115172711517271152362636Rhodothermus marinus DSM 4252, complete genometwo component transcriptional regulator, LuxR family2e-0756.6
NC_006322:2658587:267722626772262677870645Bacillus licheniformis ATCC 14580, complete genomehypothetical protein2e-0756.2
NC_006270:2657726:267636626763662677010645Bacillus licheniformis ATCC 14580, complete genometwo-component response regulator2e-0756.2
NC_006155:1916426:195028319502831950912630Yersinia pseudotuberculosis IP 32953, complete genomeputative GerR-family transcriptional regulatory protein3e-0755.8
NC_010634:1916000:195026719502671950896630Yersinia pseudotuberculosis PB1/+, complete genometwo component LuxR family transcriptional regulator3e-0755.8
NC_015312:4658548:4661685466168546632531569Pseudonocardia dioxanivorans CB1190 chromosome, complete genomeLuxR family transcriptional regulator3e-0755.8
NC_017033:2758582:2759804275980427625362733Frateuria aurantia DSM 6220 chromosome, complete genomeATP-dependent transcriptional regulator3e-0755.5
NC_006347:700838:710349710349710945597Bacteroides fragilis YCH46, complete genomeLuxR family transcriptional regulator4e-0755.5
NC_003228:648669:658180658180658779600Bacteroides fragilis NCTC 9343, complete genomeputative LuxR family transcriptional regulator4e-0755.5
NC_016776:701684:713814713814714413600Bacteroides fragilis 638R, complete genomeputative LuxR family transcriptional regulator4e-0755.5
NC_014958:1335650:135128413512841351931648Deinococcus maricopensis DSM 21211 chromosome, complete genometwo component LuxR family transcriptional regulator6e-0755.1
NC_016943:3270308:331886433188643319514651Blastococcus saxobsidens DD2, complete genomeResponse regulator containing a CheY-like receiver domain and an HTH DNA-binding domain6e-0755.1
NC_010552:335989:3359893359893375331545Burkholderia ambifaria MC40-6 chromosome 2, complete sequencetranscriptional regulator, LuxR family5e-0755.1
NC_015968:4389871:4389871438987143925762706Enterobacter asburiae LF7a chromosome, complete genomeATP-dependent transcriptional regulator, MalT-like, LuxR family6e-0754.7
NC_011894:901630:921065921065921763699Methylobacterium nodulans ORS 2060, complete genometwo component transcriptional regulator, LuxR family6e-0754.7
NC_008278:175500:1932821932821955912310Frankia alni ACN14a, complete genomeputative transcriptional regulator8e-0754.3
NC_016609:7565483:756548375654837566118636Niastella koreensis GR20-10 chromosome, complete genometwo component transcriptional regulator, LuxR family1e-0653.9
NC_018870:1417851:142871714287171429586870Thermacetogenium phaeum DSM 12270 chromosome, complete genometranscriptional regulator, LuxR family1e-0653.9
NC_003197:2327474:234670223467022347349648Salmonella typhimurium LT2, complete genomeresponse regulator1e-0653.5
NC_011274:2325840:233168123316812332304624Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91transcriptional regulator NarP1e-0653.5
NC_015577:2866601:2900417290041729018081392Treponema azotonutricium ZAS-9 chromosome, complete genomeLuxR family transcriptional regulator1e-0653.5
NC_016832:687000:700367700367701014648Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,Nitrate/nitrite response regulator protein NarP1e-0653.5
NC_011147:682897:697858697858698505648Salmonella enterica subsp. enterica serovar Paratyphi A strtranscriptional regulator NarP1e-0653.5
NC_011094:2348491:235248023524802353127648Salmonella enterica subsp. enterica serovar Schwarzengrund strtranscriptional regulator NarP1e-0653.5
NC_011149:2294500:229818522981852298832648Salmonella enterica subsp. enterica serovar Agona str. SL483,nitrate/nitrite response regulator protein NarP1e-0653.5
NC_006511:682863:697919697919698566648Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCnitrate/nitrite response regulator protein NarP1e-0653.5
NC_003198:2297837:230365323036532304300648Salmonella enterica subsp. enterica serovar Typhi str. CT18,nitrate/nitrite response regulator protein NarP1e-0653.5
NC_004631:685357:700413700413701060648Salmonella enterica subsp. enterica serovar Typhi Ty2, completenitrate/nitrite response regulator protein1e-0653.5
NC_016831:687549:702146702146702709564Salmonella enterica subsp. enterica serovar Gallinarum/pullorumnitrate/nitrite response regulator protein NarP2e-0653.5
NC_011083:2375061:239428223942822394929648Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,nitrate/nitrite response regulator protein NarP1e-0653.5
NC_011080:2342672:234847423484742349121648Salmonella enterica subsp. enterica serovar Newport str. SL254,nitrate/nitrite response regulator protein NarP1e-0653.5
NC_010102:683444:698474698474699121648Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein1e-0653.5
NC_010067:632683:648920648920649564645Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein1e-0653.5
NC_015761:2227500:222939822293982230042645Salmonella bongori NCTC 12419, complete genomenitrate/nitrite response regulator protein NarP1e-0653.5
NC_017046:2324554:234371323437132344429717Salmonella enterica subsp. enterica serovar Typhimurium str. 798nitrate/nitrite response regulator protein NarP1e-0653.5
NC_016857:2325190:234434923443492345065717Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74nitrate/nitrite response regulator protein NarP1e-0653.5
NC_016863:2324293:234644723464472347094648Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1transcriptional regulator NarP1e-0653.5
NC_016860:2323017:234224523422452342892648Salmonella enterica subsp. enterica serovar Typhimurium strtranscriptional regulator NarP1e-0653.5
NC_016856:2379027:239825523982552398902648Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Stranscriptional regulator NarP1e-0653.5
NC_016810:2325190:234441823444182345065648Salmonella enterica subsp. enterica serovar Typhimurium strnitrate/nitrite response regulator protein NarP1e-0653.5
NC_011294:2334979:234079723407972341444648Salmonella enterica subsp. enterica serovar Enteritidis strtranscriptional regulator NarP1e-0653.5
NC_011205:2462025:246784324678432468490648Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853transcriptional regulator NarP1e-0653.5
NC_006905:2355290:236098623609862361633648Salmonella enterica subsp. enterica serovar Choleraesuis strresponse regulator in two-component regulatory system with NarQ (or NarX)1e-0653.5
NC_016047:2658000:265939126593912660035645Bacillus subtilis subsp. spizizenii TU-B-10 chromosome, completetwo component response regulator2e-0653.1
NC_012125:1517925:153298115329811533697717Salmonella enterica subsp. enterica serovar Paratyphi C straintranscriptional regulator NarP2e-0653.1
NC_014209:1487699:150389515038951504512618Thermoanaerobacter mathranii subsp. mathranii str. A3 chromosome,two component transcriptional regulator, LuxR family3e-0652.8
NC_008825:2700617:270546927054692706083615Methylibium petroleiphilum PM1, complete genometwo component regulator3e-0652.8
NC_014562:2563466:257057225705722571219648Pantoea vagans C9-1 chromosome, complete genomeNitrate/nitrite response regulator protein2e-0652.8
NC_012731:1088321:1093493109349310962582766Klebsiella pneumoniae NTUH-K2044 chromosome, complete genometrans-acting regulatory protein of aco operon2e-0652.8
NC_011283:4438500:4484630448463044873952766Klebsiella pneumoniae 342 chromosome, complete genometranscriptional regulator AcoK2e-0652.8
CP002516:903241:920884920884921516633Escherichia coli KO11, complete genome3e-0652.4
CP002185:3167738:318456031845603185192633Escherichia coli W, complete genome3e-0652.4
NC_010468:906957:925377925377926009633Escherichia coli ATCC 8739, complete genometwo component transcriptional regulator, LuxR family3e-0652.4
NC_009800:2995958:301301430130143013646633Escherichia coli HS, complete genometranscriptional regulator, LuxR family3e-0652.4
NC_011751:3285646:330132833013283301960633Escherichia coli UMN026 chromosome, complete genomehypothetical protein3e-0652.4
NC_014837:3126543:314911431491143149746633Pantoea sp. At-9b chromosome, complete genomeLuxR family two component transcriptional regulator3e-0652.4
NC_002695:3702344:371710237171023717734633Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein3e-0652.4
NC_011353:3805819:382149938214993822131633Escherichia coli O157:H7 str. EC4115 chromosome, complete genomeLuxR family transcriptional regulator3e-0652.4
NC_013008:3761467:377622537762253776857633Escherichia coli O157:H7 str. TW14359 chromosome, complete genome2-component transcriptional regulator3e-0652.4
NC_009801:3175714:319115331911533191599447Escherichia coli E24377A, complete genometranscriptional regulator, LuxR family4e-0652
NC_011748:3196173:321161332116133212059447Escherichia coli 55989, complete genome4e-0652
CU928145:3196173:321161332116133212059447Escherichia coli 55989 chromosome, complete genomefragment of conserved hypothetical protein, putative Bacterial regulatory protein LuxR family (part 2)4e-0652
NC_007908:4677856:4680475468047546831592685Rhodoferax ferrireducens T118, complete genomeATP-dependent transcriptional regulator, MalT-like, LuxR family4e-0652
NC_013364:3552284:356773035677303568176447Escherichia coli O111:H- str. 11128, complete genome4e-0652
NC_007298:750361:757449757449758060612Dechloromonas aromatica RCB, complete genomeregulatory protein, LuxR:Response regulator receiver4e-0652
NC_015856:4975815:499871249987124999350639Collimonas fungivorans Ter331 chromosome, complete genometwo component LuxR family transcriptional regulator5e-0652
CU928160:3030324:304576430457643046210447Escherichia coli IAI1 chromosome, complete genomefragment of conserved hypothetical protein, putative Bacterial regulatory protein LuxR family (part 2)4e-0652
NC_011415:3217796:323323632332363233682447Escherichia coli SE11 chromosome, complete genomehypothetical protein4e-0652
NC_011741:3030324:304576430457643046210447Escherichia coli IAI1 chromosome, complete genome4e-0652
NC_013361:3867558:388299838829983883444447Escherichia coli O26:H11 str. 11368 chromosome, complete genome4e-0652
AP010958:3474077:348951534895153489958444Escherichia coli O103:H2 str. 12009 DNA, complete genome4e-0652
NC_013353:3474077:348951534895153489958444Escherichia coli O103:H2 str. 12009, complete genome4e-0652
AC_000091:2976293:299311629931162993559444Escherichia coli W3110 DNA, complete genomepredicted DNA-binding transcriptional regulator4e-0652
NC_002655:3769643:378440237844023784848447Escherichia coli O157:H7 EDL933, complete genomeputative 2-component transcriptional regulator4e-0652
NC_010473:3069529:308635230863523086795444Escherichia coli str. K-12 substr. DH10B, complete genomepredicted DNA-binding transcriptional regulator4e-0652
NC_000913:2975659:299248229924822992925444Escherichia coli K12, complete genomepredicted DNA-binding transcriptional regulator4e-0652
NC_014618:3482053:350087935008793501511633Enterobacter cloacae SCF1 chromosome, complete genomeLuxR family two component transcriptional regulator5e-0651.6
NC_016887:2269177:229490122949012295518618Nocardia cyriacigeorgica GUH-2, complete genomeresponse regulator, two-component system5e-0651.6
NC_013730:2558999:258054825805482580814267Spirosoma linguale DSM 74, complete genometranscriptional regulator, LuxR family7e-0651.2
NC_015577:427752:450186450186450836651Treponema azotonutricium ZAS-9 chromosome, complete genomeputative LuxR family two component transcriptional regulator8e-0651.2
NC_013721:533048:549417549417550070654Gardnerella vaginalis 409-05, complete genometranscriptional regulator, LuxR family1e-0550.8
NC_011147:3075186:308858930885893089272684Salmonella enterica subsp. enterica serovar Paratyphi A strLysR family transcriptional regulator1e-0550.8
NC_008322:2716676:272338927233892724054666Shewanella sp. MR-7, complete genometwo component transcriptional regulator, LuxR family1e-0550.8
NC_006511:3079512:309291530929153093598684Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCLysR-family transcriptional regulator1e-0550.8
NC_008321:2649781:265542726554272656092666Shewanella sp. MR-4, complete genometwo component transcriptional regulator, LuxR family1e-0550.8