Pre_GI: BLASTN Hits

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Query: NC_009439:3770282 Pseudomonas mendocina ymp, complete genome

Start: 3770282, End: 3801772, Length: 31491

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_009434:3611738*36117383748875137138Pseudomonas stutzeri A1501, complete genome04910BLASTN svgBLASTP svg
NC_009439:44289044289048900846119Pseudomonas mendocina ymp, complete genome02825BLASTN svgBLASTP svg
NC_009439:860571*86057188549124921Pseudomonas mendocina ymp, complete genome02815BLASTN svgBLASTP svg
NC_009439:12978511297851133481436964Pseudomonas mendocina ymp, complete genome02813BLASTN svgBLASTP svg
NC_009439:2038303*2038303206823929937Pseudomonas mendocina ymp, complete genome02813BLASTN svgBLASTP svg
NC_009439:3394174*3394174341925525082Pseudomonas mendocina ymp, complete genome02813BLASTN svgBLASTP svg
NC_009439:49137674913767493609922333Pseudomonas mendocina ymp, complete genome02813BLASTN svgBLASTP svg
NC_008463:2467219*2467219250339236174Pseudomonas aeruginosa UCBPP-PA14, complete genome02587BLASTN svgBLASTP svg
NC_010501:25118872511887254627834392Pseudomonas putida W619, complete genome0644BLASTN svgBLASTP svg
NC_015410:30934653093465315702663562Pseudomonas mendocina NK-01 chromosome, complete genome3e-133484BLASTN svgBLASTP svg
NC_008752:72518972518977609450906Acidovorax avenae subsp. citrulli AAC00-1, complete genome1e-110408BLASTN svgBLASTP svg
NC_010943:1332243*1332243137790845666Stenotrophomonas maltophilia K279a, complete genome1e-110408BLASTN svgBLASTP svg
NC_015556:2265940*2265940233644770508Pseudomonas fulva 12-X chromosome, complete genome3e-105391BLASTN svgBLASTP svg
NC_014910:24284524284528559942755Alicycliphilus denitrificans BC chromosome, complete genome5e-104387BLASTN svgBLASTP svg
NC_003295:27873712787371282580238432Ralstonia solanacearum GMI1000, complete genome1e-95359BLASTN svgBLASTP svg
NC_012560:36671773667177369462427448Azotobacter vinelandii DJ, complete genome1e-95359BLASTN svgBLASTP svg
NC_021150:36671763667176369462327448Azotobacter vinelandii CA6, complete genome1e-95359BLASTN svgBLASTP svg
NC_018691:30418513041851306454422694Alcanivorax dieselolei B5 chromosome, complete genome1e-76295BLASTN svgBLASTP svg
NC_010995:14173291417329144183324505Cellvibrio japonicus Ueda107, complete genome1e-55226BLASTN svgBLASTP svg
NC_006526:19767791976779202212445346Zymomonas mobilis subsp. mobilis ZM4, complete genome7e-54220BLASTN svgBLASTP svg
NC_004129:195347*19534722067225326Pseudomonas fluorescens Pf-5, complete genome4e-52214BLASTN svgBLASTP svg
NC_007005:14159621415962143723321272Pseudomonas syringae pv. syringae B728a, complete genome4e-46194BLASTN svgBLASTP svg
NC_021150:49296704929670497270143032Azotobacter vinelandii CA6, complete genome9e-44186BLASTN svgBLASTP svg
NC_012560:49296834929683497271443032Azotobacter vinelandii DJ, complete genome9e-44186BLASTN svgBLASTP svg
NC_008463:282565*28256532073638172Pseudomonas aeruginosa UCBPP-PA14, complete genome2e-41178BLASTN svgBLASTP svg
NC_008577:14550001455000148935334354Shewanella sp. ANA-3 chromosome 1, complete sequence5e-33151BLASTN svgBLASTP svg
NC_007005:98488*9848813693138444Pseudomonas syringae pv. syringae B728a, complete genome2e-32149BLASTN svgBLASTP svg
NC_012560:33039613303961332159917639Azotobacter vinelandii DJ, complete genome1e-27133BLASTN svgBLASTP svg
NC_021150:33039593303959332159917641Azotobacter vinelandii CA6, complete genome1e-27133BLASTN svgBLASTP svg
NC_005773:106000*10600015088044881Pseudomonas syringae pv. phaseolicola 1448A, complete genome5e-27131BLASTN svgBLASTP svg
NC_015733:25813242581324263433453011Pseudomonas putida S16 chromosome, complete genome1e-24123BLASTN svgBLASTP svg
NC_015186:347346*34734637448527140Acidiphilium multivorum AIU301, complete genome5e-24121BLASTN svgBLASTP svg
AC_000091:2747520*2747520280214854629Escherichia coli W3110 DNA, complete genome7e-23117BLASTN svgBLASTP svg
NC_000913:2746886*2746886280151454629Escherichia coli K12, complete genome7e-23117BLASTN svgBLASTP svg
NC_010473:2839902*2839902288978149880Escherichia coli str. K-12 substr. DH10B, complete genome7e-23117BLASTN svgBLASTP svg
NC_007384:2933625*2933625295770924085Shigella sonnei Ss046, complete genome1e-21113BLASTN svgBLASTP svg
NC_004741:2741971*2741971276422322253Shigella flexneri 2a str. 2457T, complete genome1e-21113BLASTN svgBLASTP svg
NC_004337:2747917*2747917277096123045Shigella flexneri 2a str. 301, complete genome1e-21113BLASTN svgBLASTP svg
CU928160:2818750*2818750284490226153Escherichia coli IAI1 chromosome, complete genome1e-21113BLASTN svgBLASTP svg
NC_007952:31960853196085323399537911Burkholderia xenovorans LB400 chromosome 2, complete sequence3e-19105BLASTN svgBLASTP svg
AP010958:32387423238742326213723396Escherichia coli O103:H2 str. 12009 DNA, complete genome2e-1799.6BLASTN svgBLASTP svg
NC_010498:2847359*2847359287165924301Escherichia coli SMS-3-5, complete genome2e-1799.6BLASTN svgBLASTP svg
NC_011750:2928990*2928990296940040411Escherichia coli IAI39 chromosome, complete genome2e-1799.6BLASTN svgBLASTP svg
NC_015259:73479573479576624731453Polymorphum gilvum SL003B-26A1 chromosome, complete genome2e-1799.6BLASTN svgBLASTP svg
NC_010468:1130000*1130000115350023501Escherichia coli ATCC 8739, complete genome7e-1797.6BLASTN svgBLASTP svg
CP002516:1165726*1165726119130025575Escherichia coli KO11, complete genome7e-1797.6BLASTN svgBLASTP svg
CP002185:2919752*2919752294461024859Escherichia coli W, complete genome7e-1797.6BLASTN svgBLASTP svg
NC_020211:45982174598217463062032404Serratia marcescens WW4, complete genome1e-1593.7BLASTN svgBLASTP svg
NC_008563:2946391*2946391296667220282Escherichia coli APEC O1, complete genome4e-1591.7BLASTN svgBLASTP svg
NC_007946:29313642931364295051219149Escherichia coli UTI89, complete genome4e-1591.7BLASTN svgBLASTP svg
NC_014910:12006051200605122046619862Alicycliphilus denitrificans BC chromosome, complete genome6e-1487.7BLASTN svgBLASTP svg
NC_006905:28576992857699289909341395Salmonella enterica subsp. enterica serovar Choleraesuis str1e-1283.8BLASTN svgBLASTP svg
NC_011149:28298112829811285287123061Salmonella enterica subsp. enterica serovar Agona str. SL483,1e-1283.8BLASTN svgBLASTP svg
NC_016010:1822212*1822212190411881907Xanthomonas axonopodis pv. citrumelo F1 chromosome, complete4e-1281.8BLASTN svgBLASTP svg
NC_008712:21549921549924259227094Arthrobacter aurescens TC1 plasmid TC1, complete sequence2e-1179.8BLASTN svgBLASTP svg
NC_009142:26926932692693271625123559Saccharopolyspora erythraea NRRL 2338, complete genome6e-1177.8BLASTN svgBLASTP svg
NC_003317:392271*39227141315320883Brucella melitensis 16M chromosome I, complete sequence2e-1075.8BLASTN svgBLASTP svg
NC_004310:1578918*1578918160110922192Brucella suis 1330 chromosome I, complete sequence2e-1075.8BLASTN svgBLASTP svg
NC_006932:1596732*1596732161909922368Brucella abortus biovar 1 str. 9-941 chromosome I, complete2e-1075.8BLASTN svgBLASTP svg
NC_007618:1593886*1593886161751623631Brucella melitensis biovar Abortus 2308 chromosome I, complete2e-1075.8BLASTN svgBLASTP svg
NC_009720:44069914406991444791640926Xanthobacter autotrophicus Py2, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_010102:28817142881714290709925386Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,2e-1075.8BLASTN svgBLASTP svg
NC_010103:1577750*1577750160141623667Brucella canis ATCC 23365 chromosome I, complete sequence2e-1075.8BLASTN svgBLASTP svg
NC_010167:1085106*1085106110813423029Brucella suis ATCC 23445 chromosome II, complete sequence2e-1075.8BLASTN svgBLASTP svg
NC_010742:1595065*1595065161869323629Brucella abortus S19 chromosome 1, complete sequence2e-1075.8BLASTN svgBLASTP svg
NC_011083:2847318*2847318291739170074Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,2e-1075.8BLASTN svgBLASTP svg
NC_015857:1609670*1609670163209922430Brucella pinnipedialis B2/94 chromosome chromosome 1, complete2e-1075.8BLASTN svgBLASTP svg
NC_021066:3028421*3028421305110422684Raoultella ornithinolytica B6, complete genome1e-0973.8BLASTN svgBLASTP svg
NC_003197:2894344*2894344294288048537Salmonella typhimurium LT2, complete genome4e-0971.9BLASTN svgBLASTP svg
NC_015556:11885001188500122602637527Pseudomonas fulva 12-X chromosome, complete genome4e-0971.9BLASTN svgBLASTP svg
NC_015410:3791500*3791500381292521426Pseudomonas mendocina NK-01 chromosome, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_002946:10201751020175106499344819Neisseria gonorrhoeae FA 1090, complete genome6e-0867.9BLASTN svgBLASTP svg
NC_008782:2062962*2062962208700324042Acidovorax sp. JS42, complete genome6e-0867.9BLASTN svgBLASTP svg
NC_009668:445134*44513451474969616Ochrobactrum anthropi ATCC 49188 chromosome 2, complete sequence6e-0867.9BLASTN svgBLASTP svg
NC_011080:28979772897977291952121545Salmonella enterica subsp. enterica serovar Newport str. SL254,6e-0867.9BLASTN svgBLASTP svg
NC_011894:40138304013830405852444695Methylobacterium nodulans ORS 2060, complete genome6e-0867.9BLASTN svgBLASTP svg
NC_014550:33778343377834343359955766Arthrobacter arilaitensis Re117, complete genome6e-0867.9BLASTN svgBLASTP svg
NC_015593:22463522246352226475318402Sphingobium chlorophenolicum L-1 chromosome chromosome 1, complete6e-0867.9BLASTN svgBLASTP svg
NC_013174:23421*234216198738567Jonesia denitrificans DSM 20603, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_011894:3820000*3820000384954329544Methylobacterium nodulans ORS 2060, complete genome9e-0763.9BLASTN svgBLASTP svg
NC_007963:3553678*3553678357230918632Chromohalobacter salexigens DSM 3043, complete genome9e-0763.9BLASTN svgBLASTP svg
NC_009439:47342374734237475635022114Pseudomonas mendocina ymp, complete genome4e-0661.9BLASTN svgBLASTP svg