Pre_GI Gene

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Host: NC_009439 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_009439:860571 Pseudomonas mendocina ymp, complete genome

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
8605718629162346hypothetical proteinBLASTP
86312386319876tRNA-AsnQuickGO ontologyBLASTP
86320886328477tRNA-ProQuickGO ontology
86329186336676tRNA-LysQuickGO ontologyBLASTP
8637808650811302FAD-dependent pyridine nucleotide-disulphide oxidoreductaseQuickGO ontologyBLASTP
865145865318174hypothetical proteinBLASTP
865343865891549MOSC domain-containing proteinQuickGO ontologyBLASTP
865888866517630hypothetical proteinBLASTP
866644867333690membrane protein-like proteinQuickGO ontologyBLASTP
867357867656300hypothetical proteinBLASTP
867708867902195zinc-binding proteinQuickGO ontologyBLASTP
867899868507609dephospho-CoA kinaseQuickGO ontologyBLASTP
868675869544870prepilin peptidaseQuickGO ontologyBLASTP
8695458707621218type II secretion system proteinQuickGO ontologyBLASTP
8707658724681704type IV-A pilus assembly ATPase PilBQuickGO ontologyBLASTP
8727358740361302transposase IS204IS1001IS1096IS1165 family proteinQuickGO ontologyBLASTP
874162874557396fimbrial protein pilinQuickGO ontologyBLASTP
874786875634849nicotinate-nucleotide pyrophosphorylaseQuickGO ontologyBLASTP
8760618783612301hypothetical proteinBLASTP
878735879286552N-acetyl-anhydromuranmyl-L-alanine amidaseQuickGO ontologyBLASTP
879289880122834signaling modulator of AmpD AmpEQuickGO ontologyBLASTP
8804648824942031methyl-accepting chemotaxis sensory transducerQuickGO ontologyBLASTP
882516883295780TatD family hydrolaseQuickGO ontologyBLASTP
8834498854912043AsmA family proteinQuickGO ontologyBLASTP