Pre_GI Gene

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Host: NC_007952 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_007952:3196085 Burkholderia xenovorans LB400 chromosome 2, complete sequence

Host Lineage: Burkholderia xenovorans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Originally identified as Pseudomonas sp. LB400 that was found in contaminated soil in upstate New York, USA, this organism is now classified in the genus Burkholderia. Polychlorinated biphenyl-degrading bacterium. Member of the genus Burkholderia are versatile organisms that occupy a surprisingly wide range of ecological niches. These bacteria are exploited for biocontrol, bioremediation, and plant growth promotion purposes. Burkholderia xenovorans has been found on fungi, animals, and from human clinical isolates such as from cystic fibrosis (CF) patients. It may be tightly associated with white-rot fungus, as the degadation of lignin by the fungus results in aromatic compounds the bacterium can then degrade. This organism is exceptionally capable of degradation of polychlorinated biphenyls (PCBs), which are environmental pollutants, and thus it may play a role in bioremediation of polluted and toxic sites and is studied as a model bioremediator. PCBs can be utilized as the sole carbon and energy source by this organism. The pathways for degradation of PCBs have been extensively characterized at both the genetic and the molecular level and have become a model system for the bacterial breakdown of these very persistent environmental contaminants.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
319502631962311206putative transposaseQuickGO ontologyBLASTP
319608532016105526Filamentous haemagglutinin AdhesinQuickGO ontologyBLASTP
32017963202737942putative PpiC-type peptidyl-prolyl cis-trans isomeraseQuickGO ontologyBLASTP
320274832045561809putative activationsecretion proteinQuickGO ontologyBLASTP
320454132066912151Filamentous haemagglutininQuickGO ontologyBLASTP
32067413207007267hypothetical protein
32072023207687486hypothetical proteinBLASTP
320805632104192364hypothetical proteinBLASTP
32107023211259558hypothetical protein
32113993212238840hypothetical proteinBLASTP
321228232137841503hypothetical protein
32141223215018897Histone-like nucleoid-structuring protein H-NSQuickGO ontologyBLASTP
321536632180592694hypothetical proteinBLASTP
32183823218747366hypothetical protein
321888232211132232DEADDEAH box helicaseQuickGO ontologyBLASTP
322108532223831299hypothetical proteinBLASTP
322238032248182439hypothetical proteinBLASTP
32258973226814918Transcriptional regulator LysR familyQuickGO ontologyBLASTP
322690932284861578Benzoylformate decarboxylase MdlCQuickGO ontologyBLASTP
322850232296861185S-mandelate dehydrogenase MdlBQuickGO ontologyBLASTP
322968332307621080Putative mandelate racemase MdlAQuickGO ontologyBLASTP
32312813232249969Transcriptional regulator AraC familyQuickGO ontologyBLASTP
32322463232575330hypothetical protein
32328213233108288transposaseQuickGO ontologyBLASTP
32331053233995891putative transposaseQuickGO ontologyBLASTP