Pre_GI Gene

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Host: NC_009439 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_009439:4734237 Pseudomonas mendocina ymp, complete genome

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
47342374734509273TOBE domain-containing proteinQuickGO ontologyBLASTP
47345424735342801aliphatic sulfonates transport ATP-binding subunitQuickGO ontologyBLASTP
47353394736133795binding-protein-dependent transport systems inner membrane componentQuickGO ontologyBLASTP
473637247375201149alkanesulfonate monooxygenaseQuickGO ontologyBLASTP
47376134738593981aliphatic sulfonate ABC transporter periplasmic ligand-binding proteinQuickGO ontologyBLASTP
47386704739263594NADPH-dependent FMN reductaseQuickGO ontologyBLASTP
473927347399116391-Cys peroxiredoxinQuickGO ontologyBLASTP
47400384740493456GCN5-related N-acetyltransferaseQuickGO ontologyBLASTP
474048847418221335chromate transporterQuickGO ontologyBLASTP
474265647444491794hypothetical protein
47450794745810732ABC transporter relatedQuickGO ontologyBLASTP
47458074746637831binding-protein-dependent transport systems inner membrane componentQuickGO ontologyBLASTP
47466414747633993aliphatic sulfonate ABC transporter periplasmic ligand-binding proteinQuickGO ontologyBLASTP
474771147490301320outer membrane porinQuickGO ontologyBLASTP
47493854750377993aliphatic sulfonate ABC transporter periplasmic ligand-binding proteinQuickGO ontologyBLASTP
475037447516031230acyl-CoA dehydrogenase type 2QuickGO ontologyBLASTP
47517074752633927rhodanese domain-containing proteinQuickGO ontologyBLASTP
475283747540211185protein of unknown function DUF395 YeeEYedEQuickGO ontologyBLASTP
475419947554431245major facilitator transporterQuickGO ontologyBLASTP
47557244756350627methyltransferase type 11QuickGO ontologyBLASTP