Pre_GI: BLASTP Hits

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Query: NC_009464:3135468:3153349 Uncultured methanogenic archaeon RC-I, complete genome

Start: 3153349, End: 3155853, Length: 2505

Host Lineage: Methanocella arvoryzae; Methanocella; Methanocellaceae; Methanocellales; Euryarchaeota; Archaea

General Information: This organism is a key methane producer in the rhizome of rice. A large portion of the methane that is emitted in rice fields is produced by methanogenic archaea. Rice Cluster I (RC-I) methanogens in the rice rhizosphere play a key role in this methane production.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013740:1218429:1237433123743312400002568Acidaminococcus fermentans DSM 20731, complete genomeDNA methylase N-4/N-6 domain protein0849
NC_014820:582443:6156866156866180462361Cenarchaeum symbiosum A, complete genomeadenine specific DNA methylase0715
NC_017075:1674758:1683833168383316866252793Rubrivivax gelatinosus IL144, complete genomeDNA methylase N-4/N-6 domain-containing protein5e-168592
NC_019902:3397170:3406348340634834096473300Thioalkalivibrio nitratireducens DSM 14787, complete genomeputative DNA methylase1e-153543
NC_016604:917972:9301929301929329092718Mycobacterium rhodesiae NBB3 chromosome, complete genomeadenine specific DNA methylase Mod2e-150533
NC_017904:2162045:2175064217506421777752712Mycobacterium sp. MOTT36Y chromosome, complete genomeadenine specific DNA methylase Mod6e-148525
NC_015508:296856:3242793242793269692691Agrobacterium sp. H13-3 chromosome linear, complete sequencetype III restriction-modification system StyLTI enzyme mod2e-143510
NC_003902:1220600:1230586123058612335042919Xanthomonas campestris pv. campestris str. ATCC 33913, completeDNA methylase2e-134480
NC_010424:214640:2301592301592328492691Candidatus Desulforudis audaxviator MP104C, complete genomeDNA methylase N-4/N-6 domain protein3e-117423
NC_017223:3345902:3357236335723633601872952Bordetella pertussis CS chromosome, complete genomeputative modification methylase4e-116419
NC_002929:3305682:3317016331701633199672952Bordetella pertussis Tohama I, complete genomeputative modification methylase4e-116419
NC_015152:2549756:2564614256461425674122799Spirochaeta sp. Buddy chromosome, complete genomeDNA methylase N-4/N-6 domain protein1e-113411
NC_015064:102224:1022241022241050312808Acidobacterium sp. MP5ACTX9 chromosome, complete genomeDNA methylase N-4/N-6 domain protein5e-113409
NC_013854:237857:2512442512442539792736Azospirillum sp. B510, complete genomeDNA methylase N-4/N-63e-110399
NC_008786:4579490:4589243458924345921612919Verminephrobacter eiseniae EF01-2, complete genomeDNA methylase N-4/N-6 domain protein6e-110399
NC_017080:166180:1766091766091795782970Phycisphaera mikurensis NBRC 102666, complete genomeputative modification methylase4e-105382
NC_016010:1247008:1256951125695112598932943Xanthomonas axonopodis pv. citrumelo F1 chromosome, completeAdenine specific DNA methylase5e-104379
NC_007404:1570000:1578754157875415810932340Thiobacillus denitrificans ATCC 25259, complete genomeadenine specific DNA-methyltransferase1e-31139
NC_013731:11605:3985539855417891935Spirosoma linguale DSM 74 plasmid pSLIN01, complete sequenceDNA methylase N-4/N-6 domain protein2e-27125
NC_016812:152831:1621551621551638941740Sinorhizobium fredii HH103, complete genomemodification methylase EcaI2e-23112
NC_013364:928486:9380159380159393311317Escherichia coli O111:H- str. 11128, complete genomeputative methyltransferase2e-22108
NC_013353:922937:9324669324669337821317Escherichia coli O103:H2 str. 12009, complete genomemethyltransferase2e-22108
AP010958:922937:9324669324669337821317Escherichia coli O103:H2 str. 12009 DNA, complete genomepredicted methyltransferase2e-22108
NC_009720:464078:4770764770764791662091Xanthobacter autotrophicus Py2, complete genomeDNA methylase N-4/N-6 domain-containing protein3e-22107
NC_017080:3712000:3725298372529837275532256Phycisphaera mikurensis NBRC 102666, complete genomeputative modification methylase2e-21105
NC_014006:3124818:3130263313026331322031941Sphingobium japonicum UT26S chromosome 1, complete genomeadenine-specific DNA-methyltransferase2e-21104
NC_015666:3606053:3624377362437736261161740Halopiger xanaduensis SH-6 chromosome, complete genomeDNA methylase N-4/N-6 domain-containing protein3e-21104
NC_007434:3973145:3984579398457939862821704Burkholderia pseudomallei 1710b chromosome I, complete sequenceAdenine specific DNA methylase Mod9e-21102
NC_014010:1392536:1411975141197514142392265Candidatus Puniceispirillum marinum IMCC1322 chromosome, completeDNA methylase N-4/N-6 domain protein2e-20101
NC_018720:47984:5851458514603611848Bifidobacterium asteroides PRL2011 chromosome, complete genomeputative DNA restriction-modification system, DNA methylase3e-20101
NC_012587:1203103:1213202121320212149081707Rhizobium sp. NGR234, complete genomemodification methylase EcaI1e-1999
NC_013929:3299736:3347147334714733489251779Streptomyces scabiei 87.22 chromosome, complete genomerestriction-modification system methyltransferase2e-1998.6
NC_008435:604772:6142926142926160821791Rhodopseudomonas palustris BisA53, complete genomeDNA methylase N-4/N-6 domain protein3e-1997.8
NC_016593:1466226:1483438148343814851471710Geobacillus thermoleovorans CCB_US3_UF5 chromosome, completeAdenine specific DNA methylase MOD4e-1997.4
NC_007514:1840971:1855303185530318563581056Chlorobium chlorochromatii CaD3, complete genomeputative type II DNA modification enzyme (methyltransferase)9e-1996.3
NC_010524:4788753:4795843479584347971861344Leptothrix cholodnii SP-6, complete genomeDNA methylase N-4/N-6 domain protein1e-1895.9
NC_010162:2469915:2481320248132024831551836Sorangium cellulosum 'So ce 56', complete genomehypothetical protein2e-1895.5
NC_010424:697187:7415747415747432111638Candidatus Desulforudis audaxviator MP104C, complete genomeDNA methylase N-4/N-6 domain protein3e-1894.4
NC_008699:1132790:1143851114385111454731623Nocardioides sp. JS614, complete genomeDNA methylase N-4/N-6 domain protein5e-1894
NC_010688:1192410:1222232122223212237491518Xanthomonas campestris pv. campestris, complete genomerestriction-modification system DNA-methyltransferase4e-1894
NC_009455:1025915:1035825103582510380262202Dehalococcoides sp. BAV1 chromosome, complete genomeDNA methylase N-4/N-6 domain-containing protein9e-1892.8
NC_011420:69843:8084680846825101665Rhodospirillum centenum SW, complete genometype III restriction-modification system methyltransferase, putative1e-1792.4
NC_015422:1876102:1885685188568518873911707Alicycliphilus denitrificans K601 chromosome, complete genomeDNA methylase N-4/N-6 domain-containing protein1e-1792.4
NC_021150:5298500:5307758530775853094401683Azotobacter vinelandii CA6, complete genomeadenine specific DNA methylase N-4/N-63e-1791.3
NC_012560:5338707:5349866534986653515481683Azotobacter vinelandii DJ, complete genomeadenine specific DNA methylase N-4/N-63e-1791.3
NC_002689:1548000:1555627155562715576722046Thermoplasma volcanium GSS1, complete genomeAdenine specific DNA methylase (Mod-related)3e-1791.3
NC_007404:974461:9955529955529972851734Thiobacillus denitrificans ATCC 25259, complete genomeadenine specific DNA methylase MOD3e-1791.3
NC_015731:1:1123411234129221689Nitrosomonas sp. Is79A3 chromosome, complete genomeDNA methylase N-4/N-6 domain-containing protein4e-1790.9
NC_009454:1577319:1591631159163115937242094Pelotomaculum thermopropionicum SI, complete genomeadenine specific DNA methylase Mod7e-1789.7
NC_007164:622000:6351156351156369591845Corynebacterium jeikeium K411, complete genomeputative DNA restriction-modification system, DNA methylase1e-1689.4
NC_013016:1441424:1449691144969114513791689Neisseria meningitidis alpha14 chromosome, complete genomeputative type III DNA modification methylase1e-1689.4
NC_009253:897684:9261549261549276711518Desulfotomaculum reducens MI-1 chromosome, complete genomeDNA methylase N-4/N-6 domain-containing protein4e-1687.4
NC_008027:775896:7822817822817837981518Pseudomonas entomophila L48, complete genomeAdenine specific DNA methylase5e-1687
NC_011891:4169796:4184905418490541867041800Anaeromyxobacter dehalogenans 2CP-1, complete genomeDNA methylase N-4/N-6 domain protein7e-1686.7
NC_007760:4143301:4156064415606441578631800Anaeromyxobacter dehalogenans 2CP-C, complete genomeDNA methylase N-4/N-67e-1686.7
NC_003305:922357:9342649342649356671404Agrobacterium tumefaciens str. C58 chromosome linear, completeDNA methyltransferase2e-1585.5
NC_003063:1128370:1139089113908911404741386Agrobacterium tumefaciens str. C58 chromosome linear, completehypothetical protein1e-1585.5
NC_016616:2997348:3006565300656530077311167Dechlorosoma suillum PS chromosome, complete genomeadenine specific DNA methylase Mod7e-1583.6
NC_019897:73957:1047711047711066601890Thermobacillus composti KWC4 chromosome, complete genomeadenine specific DNA methylase Mod4e-1274.3
NC_016633:3069518:3124223312422331261211899Sphaerochaeta pleomorpha str. Grapes chromosome, complete genomeadenine specific DNA methylase Mod5e-1273.9
NC_013156:980888:9849279849279869161990Methanocaldococcus fervens AG86, complete genome5e-1273.9
NC_019012:61360:7448774487761481662Fibrella aestuarina BUZ 2 plasmid pFAES01, complete sequencesite-specific DNA-methyltransferase (adenine-specific)1e-1172.4
NC_011666:2109274:2119816211981621217111896Methylocella silvestris BL2, complete genomeSite-specific DNA-methyltransferase (adenine-specific)1e-1172.4
NC_013171:342714:3918693918693937791911Anaerococcus prevotii DSM 20548, complete genomeDNA methylase N-4/N-6 domain protein2e-1172
NC_011296:1151346:1161183116118311632372055Thermodesulfovibrio yellowstonii DSM 11347, complete genomemodification methylase5e-1170.5
NC_011745:2209288:2240713224071322426111899Escherichia coli ED1a chromosome, complete genomesite-specific DNA-methyltransferase, component of type III restriction-modification system2e-1068.2
NC_021184:4312000:4314769431476943166311863Desulfotomaculum gibsoniae DSM 7213, complete genomeadenine specific DNA methylase Mod3e-1068.2
NC_008639:1573971:158639215863921586925534Chlorobium phaeobacteroides DSM 266, complete genomehypothetical protein3e-1068.2
NC_000915:1583967:1600102160010216020381937Helicobacter pylori 26695, complete genome3e-1067.8
NC_008609:206313:2295852295852314651881Pelobacter propionicus DSM 2379, complete genomeDNA methylase N-4/N-6 domain protein4e-1067.8
NC_018939:1583653:1600709160070916020611353Helicobacter pylori 26695 chromosome, complete genometype III DNA modification enzyme8e-1066.6
NC_013410:1591500:1605769160576916076881920Fibrobacter succinogenes subsp. succinogenes S85 chromosome,adenine-specific DNA-methyltransferase1e-0965.9
NC_009621:389181:3934683934683955912124Sinorhizobium medicae WSM419 plasmid pSMED02, complete sequenceadenine-specific DNA-methyltransferase1e-0965.9
NC_000917:1246806:1258647125864712615562910Archaeoglobus fulgidus DSM 4304, complete genomemodification methylase, type III R/M system1e-0965.9
NC_014828:2038692:2055432205543220573121881Ethanoligenens harbinense YUAN-3 chromosome, complete genomeSite-specific DNA-methyltransferase (adenine-specific)2e-0965.1
NC_016023:579000:5892185892185908881671Bacillus coagulans 36D1 chromosome, complete genomeDNA methylase N-4/N-6 domain-containing protein3e-0964.7
NC_009454:136468:1432821432821451441863Pelotomaculum thermopropionicum SI, complete genomeadenine specific DNA methylase Mod3e-0964.3
NC_008942:1198000:1228056122805612299661911Methanocorpusculum labreanum Z, complete genomehypothetical protein4e-0963.9
NC_012032:398419:4104544104544116561203Chloroflexus sp. Y-400-fl, complete genomeDNA methylase N-4/N-6 domain protein5e-0963.9
NC_010175:398453:4104884104884116901203Chloroflexus aurantiacus J-10-fl, complete genomeDNA methylase N-4/N-6 domain protein5e-0963.9
NC_017372:748097:7480977480977499651869Helicobacter pylori India7 chromosome, complete genomeadenine specific DNA methyltransferase1e-0862.8
NC_016751:142237:1594331594331615772145Marinitoga piezophila KA3 chromosome, complete genomeadenine specific DNA methylase Mod1e-0862.4
NC_014377:1943476:1957961195796119600572097Thermosediminibacter oceani DSM 16646 chromosome, complete genomeSite-specific DNA-methyltransferase (adenine-specific)1e-0862.4
NC_015577:1392390:1400399140039914023631965Treponema azotonutricium ZAS-9 chromosome, complete genomesite-specific DNA-methyltransferase2e-0862
NC_010161:1844452:1844452184445218462841833Bartonella tribocorum CIP 105476, complete genometype III restriction system methylase3e-0861.6
NC_015635:3860570:3871555387155538735401986Microlunatus phosphovorus NM-1, complete genomeputative type III restriction-modification system methyltransferase3e-0861.2
NC_020244:3961337:3973337397333739753462010Bacillus subtilis XF-1, complete genomehypothetical protein3e-0861.2
NC_013037:6281164:6303544630354463054691926Dyadobacter fermentans DSM 18053, complete genomeSite-specific DNA-methyltransferase (adenine- specific)3e-0861.2
NC_014555:1477934:1490376149037614917221347Helicobacter pylori PeCan4 chromosome, complete genometype III DNA modification enzyme (methyltransferase)3e-0861.2
NC_015977:2807782:2829379282937928310581680Roseburia hominis A2-183 chromosome, complete genomeadenine specific DNA methylase Mod4e-0860.8
NC_020301:1486695:1486695148669514885361842Bartonella vinsonii subsp. berkhoffii str. Winnie, complete genomeadenine specific DNA methylase Mod5e-0860.5
NC_010337:2950500:2958249295824929601621914Heliobacterium modesticaldum Ice1, complete genomeDNA methylase5e-0860.5
NC_007164:1434305:1453307145330714553222016Corynebacterium jeikeium K411, complete genomeputative DNA restriction-modification system, DNA methylase5e-0860.5
NC_006582:883922:8929238929238941341212Bacillus clausii KSM-K16, complete genomeadenine-specific DNA methylase6e-0860.5
NC_002935:781172:7837287837287857312004Corynebacterium diphtheriae NCTC 13129, complete genomePutative DNA methylase7e-0860.1
NC_016782:720000:7327917327917347942004Corynebacterium diphtheriae 241 chromosome, complete genomeputative DNA restriction-modification system, DNA methylase7e-0860.1
NC_016786:720000:7327607327607347632004Corynebacterium diphtheriae HC01 chromosome, complete genomeputative DNA restriction-modification system, DNA methylase7e-0860.1
NC_016787:733685:7463557463557483582004Corynebacterium diphtheriae HC03 chromosome, complete genomeputative DNA restriction-modification system, DNA methylase7e-0860.1
NC_017371:1601452:1618276161827616196581383Helicobacter pylori Gambia94/24 chromosome, complete genomeputative type III restriction enzyme M protein (type III adenine specific DNA methyltransferase (Mod))6e-0860.1
NC_013411:2191514:2203766220376622057121947Geobacillus sp. Y412MC61, complete genomeSite-specific DNA-methyltransferase (adenine-specific)9e-0859.7
NC_014915:1331459:1343711134371113456571947Geobacillus sp. Y412MC52 chromosome, complete genomeSite-specific DNA-methyltransferase (adenine-specific)9e-0859.7
NC_014215:2295500:2303386230338623053862001Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1,DNA methylase ( site-specific DNA-methyltransferase adenine-specific, Putative type III restriction-modification system)1e-0759.7
NC_011837:3226500:3236761323676132387401980Clostridium kluyveri NBRC 12016, complete genomehypothetical protein1e-0758.9
NC_009706:3291330:3305268330526833072381971Clostridium kluyveri DSM 555 chromosome, complete genomeType III restriction-modification system, modification subunit2e-0758.9
NC_020207:559310:5593105593105611481839Enterococcus faecium NRRL B-2354, complete genomeType III restriction-modification system methylation subunit2e-0758.9
NC_020387:149890:1643621643621662841923Dehalococcoides mccartyi BTF08, complete genometype III restriction-modification protein, methylation subunit2e-0758.5
NC_013207:19154:3550235502372171716Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446Site-specific DNA-methyltransferase (adenine- specific)2e-0758.5
NC_015635:3860570:3869591386959138715551965Microlunatus phosphovorus NM-1, complete genometype III restriction-modification system methyltransferase2e-0758.2
NC_014206:2266000:2271726227172622736271902Geobacillus sp. C56-T3 chromosome, complete genomeadenine-specific DNA-methyltransferase2e-0758.2
NC_014169:1099024:1125542112554211274761935Bifidobacterium longum subsp. longum JDM301 chromosome, completeadenine specific DNA methylase Mod2e-0758.2
NC_017365:1466500:1482014148201414833961383Helicobacter pylori F30, complete genomeType III DNA modification enzyme2e-0758.2
NC_008054:1030994:1039518103951810413921875Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, completeType III restriction-modification system methyltransferase3e-0758.2
NC_010170:4463000:4487301448730144891991899Bordetella petrii, complete genometype III restriction system methylase4e-0757.8
NC_013124:1439915:1452724145272414546791956Acidimicrobium ferrooxidans DSM 10331, complete genomeDNA methylase N-4/N-6 domain protein3e-0757.8
NC_015554:3808529:3824450382445038263361887Alteromonas sp. SN2 chromosome, complete genometype III restriction-modification system methyltransferase3e-0757.8
NC_015381:4363005:4375906437590643770571152Burkholderia gladioli BSR3 chromosome 1, complete sequenceSite-specific DNA-methyltransferase3e-0757.8
NC_008530:1454118:1454118145411814560291912Lactobacillus gasseri ATCC 33323, complete genome5e-0757.4
NC_010161:2050816:2050816205081620526811866Bartonella tribocorum CIP 105476, complete genometype III restriction system methylase5e-0757.4
NC_019972:110500:1176821176821195741893Methanomethylovorans hollandica DSM 15978 plasmid pMETHO01,adenine specific DNA methylase Mod7e-0756.6
NC_010644:231486:2392872392872412571971Elusimicrobium minutum Pei191, complete genomeDNA methylase N-4/N-6 domain-containing protein8e-0756.6
NC_011498:1571840:1585069158506915871112043Helicobacter pylori P12, complete genometype III R-M system methyltransferase1e-0655.8
NC_018867:10238:5839658396603931998Dehalobacter sp. CF chromosome, complete genomeType III restriction-modification system methylation subunit1e-0655.8
NC_006513:1379735:1450243145024314520481806Azoarcus sp. EbN1, complete genomeadenine specific DNA methylase MOD2e-0655.1
NC_017367:1505780:1521009152100915223251317Helicobacter pylori F57, complete genomeType III DNA modification enzyme2e-0655.1
NC_017354:1465925:1478266147826614797141449Helicobacter pylori 52 chromosome, complete genomeadenine specific DNA methylase3e-0654.7
NC_002936:1004570:1015763101576310175261764Dehalococcoides ethenogenes 195, complete genometype III restriction-modification system, methylase subunit3e-0654.7
NC_012917:985617:9933099933099950691761Pectobacterium carotovorum subsp. carotovorum PC1, complete genomeSite-specific DNA-methyltransferase (adenine-specific)6e-0653.5