Pre_GI Gene

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Host: NC_012917 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_012917:985617 Pectobacterium carotovorum subsp. carotovorum PC1, complete genome

Host Lineage: Pectobacterium carotovorum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host. Pectobacterium carotovorum causes soft-rot diseases of various plant hosts through degradation of the plant cell walls. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium.


StartEndLengthCDS descriptionQuickGO ontologyBLASTP
9856179875931977Site-specific DNA-methyltransferase adenine-specificQuickGO ontologyBLASTP
9875939905892997Type III site-specific deoxyribonucleaseQuickGO ontologyBLASTP
9906859933182634type III restriction protein res subunitQuickGO ontologyBLASTP
9933099950691761Site-specific DNA-methyltransferase adenine-specificQuickGO ontologyBLASTP
995191995340150hypothetical protein
995673995978306CcdB proteinQuickGO ontologyBLASTP
995981996199219Post-segregation antitoxin CcdAQuickGO ontologyBLASTP
996258997001744putative MobC mobilization proteinQuickGO ontologyBLASTP
997746998087342hypothetical proteinBLASTP
998273998467195hypothetical proteinBLASTP
9985629998211260integrase family proteinQuickGO ontologyBLASTP
10000021000109108hypothetical protein
10002541000970717hypothetical proteinBLASTP
100097010040653096type I site-specific deoxyribonuclease HsdR familyQuickGO ontologyBLASTP
100408610051531068Appr-1-p processing domain proteinQuickGO ontologyBLASTP
10051501005806657hypothetical proteinBLASTP