Pre_GI Gene

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Host: NC_013410 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_013410:1591500 Fibrobacter succinogenes subsp. succinogenes S85 chromosome,

Host Lineage: Fibrobacter succinogenes; Fibrobacter; Fibrobacteraceae; Fibrobacterales; Fibrobacteres; Bacteria

General Information: Temp: Mesophile; Temp: 37C; Habitat: Host. Cellulolytic rumen bacterium. This bacterium is one of the three most predominant cellulolytic organisms in the rumen. Since cellulose is one of the most abundant carbohydrates on the planet, this organism is, therefore, an important part of the global carbon biogeochemical cycle, converting the mass of fixed carbon generated by photosynthetic organisms back to products that eventually end up as carbon dioxide. Increasing cellulose degradation is an important goal in industrial processes. This organism is highly specialized for cellulose degradation, and is only capable of utilizing cellulose and cellulolytic degradation products as carbon sources. Access to cellulose is a rate-liming step in degradation, and the cellulolytic organisms have devised a number of mechanisms for improving access to this insoluble substrate, one of which is the production of surface-localized cellulases. The active enzymes are cell wall associated, but the presence of cellulosomes, large multiprotein cellulase complexes, has not been detected in this organism. Adherence is another method used to promote cellulose degradation, and this organism produces an extracellular matrix of glycoprotein glycocalyx which allows attachment to insoluble cellulose.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
15915621591774213hypothetical protein
159182615928811056hypothetical proteinBLASTP
159295615960033048type III site-specific deoxyribonucleaseQuickGO ontologyBLASTP
15960131596240228hypothetical proteinBLASTP
15962441596723480hypothetical proteinBLASTP
15967201596935216hypothetical proteinBLASTP
159704015992652226hypothetical proteinBLASTP
15995131599893381hypothetical protein
15999271600577651transcriptional regulator XRE familyQuickGO ontology
160052716032382712hypothetical protein
160325216057652514DNA primase small subunitQuickGO ontologyBLASTP
160576916076881920adenine-specific DNA-methyltransferaseQuickGO ontologyBLASTP
160773516104312697hypothetical proteinBLASTP
161060716119291323ATPaseQuickGO ontologyBLASTP
161214916133241176hypothetical proteinBLASTP
16133411613805465hypothetical proteinBLASTP
16138051614452648hypothetical proteinBLASTP
16144521615123672hypothetical proteinBLASTP
161512016184223303helicase domain-containing proteinQuickGO ontologyBLASTP
161859016202931704hypothetical proteinBLASTP
162044516216021158G-D-S-L family lipolytic proteinQuickGO ontologyBLASTP
162164116226571017hypothetical proteinBLASTP
16227091623278570hypothetical protein
162330816249001593virulence factor MVIN family proteinQuickGO ontologyBLASTP