Pre_GI Gene

Some Help

Host: NC_003063 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_003063:1128370 Agrobacterium tumefaciens str. C58 chromosome linear, complete

Host Lineage: Agrobacterium fabrum; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This strain is a biovar 1 nopaline-producing strain originally isolated from a cherry tree tumor. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
112837011306672298hypothetical proteinBLASTP
11310511131443393hypothetical proteinBLASTP
11314301131756327hypothetical proteinBLASTP
11320591132352294hypothetical proteinBLASTP
11323491133101753hypothetical proteinBLASTP
11331351133554420hypothetical proteinBLASTP
11340961134383288hypothetical protein
11348681135548681hypothetical proteinBLASTP
11356211136133513hypothetical proteinBLASTP
113618511372671083hypothetical proteinBLASTP
11376701138260591hypothetical proteinBLASTP
113908911404741386hypothetical proteinBLASTP
11404521140778327hypothetical proteinBLASTP
11415561141783228hypothetical proteinBLASTP
11417801142406627hypothetical proteinBLASTP
11426971143482786hypothetical proteinBLASTP
11434691144164696hypothetical proteinBLASTP
11441771144716540hypothetical proteinBLASTP
114488011464211542hypothetical proteinBLASTP
114662911478191191hypothetical proteinBLASTP
114813911493951257hypothetical proteinBLASTP
11494861150337852hypothetical proteinBLASTP
11504041150982579hypothetical proteinBLASTP
11510331151920888hypothetical proteinBLASTP
11519231152753831hypothetical proteinBLASTP
11533571154340984hypothetical proteinBLASTP
1154366115539410295-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferaseQuickGO ontologyBLASTP