Pre_GI Gene

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Host: NC_003305 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_003305:922357 Agrobacterium tumefaciens str. C58 chromosome linear, complete

Host Lineage: Agrobacterium tumefaciens; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Gram-negative soil bacterium. This is the most widely studied species in the genus. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
922357922833477acyl-CoA hydrolaseQuickGO ontologyBLASTP
922836923723888transcriptional regulator LysR familyQuickGO ontologyBLASTP
923774924352579acetyltransferaseQuickGO ontologyBLASTP
924419925270852transcriptional regulator LysR familyQuickGO ontologyBLASTP
9253619266171257MFS permeaseQuickGO ontologyBLASTP
9269379281271191phage-related integraseQuickGO ontologyBLASTP
9283359298761542hypothetical proteinBLASTP
930040930579540hypothetical proteinBLASTP
930592931287696hypothetical proteinBLASTP
931274932059786hypothetical proteinBLASTP
932350932928579hypothetical proteinBLASTP
932973933227255hypothetical proteinBLASTP
933301933735435hypothetical protein
9342649356671404DNA methyltransferaseQuickGO ontologyBLASTP
935732936040309hypothetical proteinBLASTP
936039936515477hypothetical protein
936496937086591hypothetical proteinBLASTP
9375679385711005hypothetical proetinQuickGO ontologyBLASTP
938623939135513hypothetical proteinBLASTP
939208939888681hypothetical proteinBLASTP
939909940349441hypothetical protein
940418940972555hypothetical protein
941328941621294hypothetical proteinBLASTP
941775942407633resolvaseQuickGO ontologyBLASTP
942434942697264hypothetical proteinBLASTP
943000943302303hypothetical proteinBLASTP
943313943579267hypothetical proteinBLASTP
943733943909177hypothetical protein
9440899461882100hypothetical proteinBLASTP
946227946412186hypothetical protein
946414946713300hypothetical protein
946757947554798hypothetical protein
947666947980315hypothetical protein