Pre_GI: BLASTP Hits

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Query: NC_009439:4267356:4276277 Pseudomonas mendocina ymp, complete genome

Start: 4276277, End: 4276393, Length: 117

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015556:717993:728561728561728677117Pseudomonas fulva 12-X chromosome, complete genome50S ribosomal protein L369e-1475.5
NC_002516:4747154:475697947569794757095117Pseudomonas aeruginosa PAO1, complete genome50S ribosomal protein L363e-1373.9
NC_012560:603447:617369617369617485117Azotobacter vinelandii DJ, complete genome50S ribosomal protein L365e-1373.2
NC_021150:603447:617369617369617485117Azotobacter vinelandii CA6, complete genome50S ribosomal protein L365e-1373.2
NC_008513:343540:358535358535358651117Buchnera aphidicola str. Cc (Cinara cedri), complete genome50S ribosomal protein L361e-1065.5
NC_004545:499709:518799518799518915117Buchnera aphidicola str. Bp (Baizongia pistaciae), complete genome50S ribosomal protein L361e-1065.1
NC_011761:292903:303639303639303752114Acidithiobacillus ferrooxidans ATCC 23270 chromosome, complete50S ribosomal protein L362e-1064.7
NC_011206:469901:482153482153482266114Acidithiobacillus ferrooxidans ATCC 53993, complete genomeribosomal protein L362e-1064.7
NC_015942:2669292:267407626740762674189114Acidithiobacillus ferrivorans SS3 chromosome, complete genome50S ribosomal protein L362e-1064.7
NC_007645:6327428:633486963348696334985117Hahella chejuensis KCTC 2396, complete genomeribosomal protein L362e-1064.3
NC_017256:545204:550448550448550564117Buchnera aphidicola str. Ak (Acyrthosiphon kondoi) chromosome,50S ribosomal protein L364e-1063.5
NC_010524:4402478:441084344108434410956114Leptothrix cholodnii SP-6, complete genomeribosomal protein L368e-1062.4
NC_007908:4677856:469486446948644694995132Rhodoferax ferrireducens T118, complete genomeribosomal protein L361e-0962
NC_015711:5761030:577902257790225779138117Myxococcus fulvus HW-1 chromosome, complete genomehypothetical protein1e-0962
NC_017259:523840:527857527857527973117Buchnera aphidicola str. Ua (Uroleucon ambrosiae) chromosome,50S ribosomal protein L361e-0961.6
NC_009092:179226:189736189736189849114Shewanella loihica PV-4, complete genomeribosomal protein L361e-0961.6
NC_008781:330919:339911339911340024114Polaromonas naphthalenivorans CJ2, complete genomeribosomal protein L362e-0961.2
NC_015662:385461:387009387009387125117Buchnera aphidicola (Cinara tujafilina) chromosome, complete50S ribosomal protein L362e-0961.2
NC_017252:545236:550518550518550637120Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum) chromosome,50S ribosomal protein L363e-0960.8
NC_017253:545177:550457550457550576120Buchnera aphidicola str. JF99 (Acyrthosiphon pisum) chromosome,50S ribosomal protein L363e-0960.8
NC_017254:545236:550516550516550635120Buchnera aphidicola str. JF98 (Acyrthosiphon pisum) chromosome,50S ribosomal protein L363e-0960.8
NC_011891:2264853:228449722844972284613117Anaeromyxobacter dehalogenans 2CP-1, complete genomeribosomal protein L362e-0960.8
NC_011145:2190531:221017422101742210290117Anaeromyxobacter sp. K, complete genomeribosomal protein L362e-0960.8
NC_017255:545270:550551550551550667117Buchnera aphidicola str. LL01 (Acyrthosiphon pisum) chromosome,50S ribosomal protein L363e-0960.5
NC_011834:546738:550773550773550889117Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum) chromosome,50S ribosomal protein L363e-0960.5
NC_011833:545713:550995550995551111117Buchnera aphidicola str. 5A (Acyrthosiphon pisum) chromosome,50S ribosomal protein L363e-0960.5
NC_002528:546500:549558549558549674117Buchnera aphidicola str. APS (Acyrthosiphon pisum), complete50S ribosomal protein L363e-0960.5
NC_004061:540354:550411550411550527117Buchnera aphidicola str. Sg (Schizaphis graminum), complete genome50S ribosomal protein L363e-0960.5
NC_006908:291539:310951310951311067117Mycoplasma mobile 163K, complete genome50S ribosomal protein l365e-0960.1
NC_015731:2950874:296497929649792965092114Nitrosomonas sp. Is79A3 chromosome, complete genome50S ribosomal protein L364e-0960.1
NC_010677:1621500:162820016282001628313114Francisella tularensis subsp. mediasiatica FSC147, complete genome50S ribosomal protein L364e-0960.1
NC_009465:171000:191762191762191875114Candidatus Vesicomyosocius okutanii HA, complete genome50S ribosomal protein L365e-0959.7
NC_010645:31500:520685206852181114Bordetella avium 197N, complete genome50S ribosomal protein L368e-0959.3
NC_008245:324926:347836347836347949114Francisella tularensis subsp. tularensis FSC 198, complete genome50S ribosomal protein L367e-0959.3
NC_015696:220798:247603247603247716114Francisella sp. TX077308 chromosome, complete genome50S ribosomal protein L36p7e-0959.3
NC_008601:246583:269577269577269690114Francisella tularensis subsp. novicida U112, complete genome50S ribosomal protein L367e-0959.3
NC_006570:324974:347884347884347997114Francisella tularensis subsp. tularensis Schu 4, complete genome50S ribosomal protein L367e-0959.3
NC_007880:221674:244587244587244700114Francisella tularensis subsp. holarctica, complete genome50S ribosomal protein L367e-0959.3
NC_009257:1636633:164388016438801643993114Francisella tularensis subsp. tularensis WY96-3418 chromosome,50S ribosomal protein L367e-0959.3
NC_016933:324883:347793347793347906114Francisella tularensis TIGB03 chromosome, complete genome50S ribosomal protein L367e-0959.3
NC_016933:400790:423700423700423813114Francisella tularensis TIGB03 chromosome, complete genome50S ribosomal protein L367e-0959.3
NC_016937:324883:347793347793347906114Francisella tularensis subsp. tularensis TI0902 chromosome,50S ribosomal protein L367e-0959.3
NC_016620:3259749:327711332771133277229117Bacteriovorax marinus SJ, complete genome50S ribosomal protein L361e-0858.9
NC_005072:1458799:147690014769001477016117Prochlorococcus marinus subsp. pastoris str. CCMP1986, complete50S Ribosomal protein L361e-0858.5
NC_008817:1476473:151844315184431518559117Prochlorococcus marinus str. MIT 9515, complete genome50S Ribosomal protein L361e-0858.5
NC_002971:211331:235264235264235386123Coxiella burnetii RSA 493, complete genomeribosomal protein L361e-0858.5
NC_016893:181951:195390195390195506117Wigglesworthia glossinidia endosymbiont of Glossina morsitans50S ribosomal protein L362e-0858.2
NC_016052:2274427:227522622752262275342117Tetragenococcus halophilus NBRC 12172, complete genome50S ribosomal protein L361e-0858.2
NC_011992:392534:401739401739401852114Acidovorax ebreus TPSY, complete genomeribosomal protein L362e-0857.8
NC_010002:1145951:115587511558751155988114Delftia acidovorans SPH-1, complete genome2e-0857.8
NC_015563:6167512:617544461754446175557114Delftia sp. Cs1-4 chromosome, complete genome50S ribosomal protein L362e-0857.8
NC_008782:401667:410873410873410986114Acidovorax sp. JS42, complete genomeribosomal protein L362e-0857.8
NC_011374:255425:276199276199276312114Ureaplasma urealyticum serovar 10 str. ATCC 33699 chromosome,50S ribosomal protein L363e-0857.4
NC_014011:655266:677444677444677569126Aminobacterium colombiense DSM 12261 chromosome, complete genomeribosomal protein L363e-0857.4
NC_016829:483860:484672484672484788117Mycoplasma hyorhinis GDL-1 chromosome, complete genome50S ribosomal protein L365e-0856.6
NC_017519:805643:825247825247825363117Mycoplasma hyorhinis MCLD chromosome, complete genome50S ribosomal protein L365e-0856.6
NC_014014:117925:140079140079140192114Mycoplasma crocodyli MP145 chromosome, complete genome50S ribosomal protein L365e-0856.6
NC_015516:131564:149013149013149129117Melissococcus plutonius ATCC 35311, complete genome50S ribosomal protein L36p4e-0856.6
NC_016938:136331:150893150893151009117Melissococcus plutonius DAT561 chromosome 1, complete genome50S ribosomal protein L36p4e-0856.6
NC_014921:777047:783304783304783417114Mycoplasma fermentans M64 chromosome, complete genome50S ribosomal protein l365e-0856.2
NC_015499:491423:516043516043516156114Thermodesulfobium narugense DSM 14796 chromosome, complete genome50S ribosomal protein L366e-0856.2
NC_013223:2337049:234222323422232342336114Desulfohalobium retbaense DSM 5692, complete genomeribosomal protein L366e-0856.2
NC_004344:622318:636330636330636446117Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis,hypothetical protein7e-0855.8
NC_008576:1061171:106591110659111066024114Magnetococcus sp. MC-1, complete genomeribosomal protein L361e-0755.5
NC_017316:157254:175313175313175429117Enterococcus faecalis OG1RF chromosome, complete genome50S ribosomal protein L361e-0755.5
NC_004668:191732:210346210346210462117Enterococcus faecalis V583, complete genome50S ribosomal protein L361e-0755.5
NC_010814:1390817:140679214067921406905114Geobacter lovleyi SZ, complete genomeribosomal protein L361e-0755.1
NC_005085:4499500:450450345045034504616114Chromobacterium violaceum ATCC 12472, complete genomeribosomal protein L361e-0755.1
NC_016803:3795916:380964538096453809758114Desulfovibrio desulfuricans ND132 chromosome, complete genome50S ribosomal protein L362e-0754.7
NC_002162:268049:288759288759288872114Ureaplasma parvum serovar 3 str. ATCC 700970, complete genomeribosomal protein L362e-0754.7
NC_010503:267924:288795288795288908114Ureaplasma parvum serovar 3 str. ATCC 27815 chromosome, complete50S ribosomal protein L362e-0754.7
NC_018645:4049831:405633940563394056467129Desulfobacula toluolica Tol2, complete genome50S ribosomal protein L36 RpmJ2e-0754.7
NC_000921:1343701:134791013479101348023114Helicobacter pylori J99, complete genome50S RIBOSOMAL PROTEIN L362e-0754.7
NC_014560:1309470:131356213135621313675114Helicobacter pylori SJM180 chromosome, complete genomehypothetical protein2e-0754.7
NC_017063:1362000:136510513651051365218114Helicobacter pylori ELS37 chromosome, complete genomehypothetical protein2e-0754.7
NC_017355:1299874:130381713038171303930114Helicobacter pylori v225d chromosome, complete genome50S ribosomal protein L362e-0754.7
NC_017358:1342000:134488013448801344993114Helicobacter pylori Cuz20 chromosome, complete genomehypothetical protein2e-0754.7
NC_017361:1303553:130777813077781307891114Helicobacter pylori SouthAfrica7 chromosome, complete genomehypothetical protein2e-0754.7
NC_017365:77150:942409424094353114Helicobacter pylori F30, complete genomehypothetical protein2e-0754.7
NC_017368:1300000:130306213030621303175114Helicobacter pylori F16, complete genomehypothetical protein2e-0754.7
NC_017371:1358000:136121713612171361330114Helicobacter pylori Gambia94/24 chromosome, complete genomehypothetical protein2e-0754.7
NC_017372:1373766:137765013776501377763114Helicobacter pylori India7 chromosome, complete genomehypothetical protein2e-0754.7
NC_017376:1324000:132729913272991327412114Helicobacter pylori SNT49 chromosome, complete genomehypothetical protein2e-0754.7
NC_009662:222964:237542237542237655114Nitratiruptor sp. SB155-2, complete genome50S ribosomal protein L362e-0754.3
NC_017367:1333811:133774113377411337854114Helicobacter pylori F57, complete genomehypothetical protein2e-0754.3
NC_016148:698388:709762709762709887126Thermovirga lienii DSM 17291 chromosome, complete genomeLSU ribosomal protein L36P3e-0753.9
NC_013939:1767262:177380417738041773917114Deferribacter desulfuricans SSM1, complete genome50S ribosomal protein L363e-0753.9
NC_019908:2068631:209605220960522096168117Brachyspira pilosicoli P43/6/78 chromosome, complete genome50S ribosomal protein L363e-0753.9
NC_018604:2579000:258597225859722586088117Brachyspira pilosicoli WesB complete genomeribosomal protein L363e-0753.9
NC_010003:795355:817237817237817353117Petrotoga mobilis SJ95, complete genomeribosomal protein L363e-0753.9
NC_008508:508000:525323525323525436114Leptospira borgpetersenii serovar Hardjo-bovis L550 chromosome 1,50S ribosomal protein L363e-0753.9
NC_008510:3147839:314863331486333148746114Leptospira borgpetersenii serovar Hardjo-bovis JB197 chromosome 1,50S ribosomal protein L363e-0753.9
NC_005823:3454000:345795534579553458068114Leptospira interrogans serovar Copenhageni str. Fiocruz L1-13050S ribosomal protein L363e-0753.9
NC_005042:1552074:155402015540201554136117Prochlorococcus marinus subsp. marinus str. CCMP1375, completeRibosomal protein L363e-0753.9
NC_018677:73254:102627102627102740114Candidatus Portiera aleyrodidarum BT-B-HRs chromosome, completeLSU ribosomal protein L36p3e-0753.9
NC_018507:79686:109059109059109172114Candidatus Portiera aleyrodidarum BT-B chromosome, complete genome50S ribosomal protein L363e-0753.9
NC_007517:687276:711739711739711852114Geobacter metallireducens GS-15, complete genomeribosomal protein L363e-0753.9
NC_008508:481000:496036496036496149114Leptospira borgpetersenii serovar Hardjo-bovis L550 chromosome 1,50S ribosomal protein L363e-0753.9
NC_016629:2449731:245915424591542459267114Desulfovibrio africanus str. Walvis Bay chromosome, complete50S ribosomal protein L363e-0753.5
NC_005061:214168:232091232091232207117Candidatus Blochmannia floridanus, complete genome50S ribosomal subunit protein L364e-0753.5
NC_010842:2035146:203595520359552036068114Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)' chromosome50S ribosomal protein L364e-0753.5
NC_016751:857359:864236864236864352117Marinitoga piezophila KA3 chromosome, complete genome50S ribosomal protein L364e-0753.5
NC_015318:1336282:133993613399361340049114Hippea maritima DSM 10411 chromosome, complete genome50S ribosomal protein L364e-0753.5
NC_002937:1395977:140424614042461404359114Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, completeribosomal protein L365e-0753.1
NC_015572:4209000:421682742168274216940114Methylomonas methanica MC09 chromosome, complete genome50S ribosomal protein L366e-0752.8
NC_014150:2088012:211122921112292111345117Brachyspira murdochii DSM 12563 chromosome, complete genomeribosomal protein L367e-0752.8
NC_017512:2087098:209795720979572098070114Neisseria meningitidis WUE 2594, complete genome50S ribosomal protein L369e-0752.4
NC_017505:148644:161262161262161375114Neisseria meningitidis alpha710 chromosome, complete genome50S ribosomal protein L369e-0752.4
NC_013016:2014368:202422320242232024336114Neisseria meningitidis alpha14 chromosome, complete genome50S ribosomal protein L369e-0752.4
NC_008767:136958:149889149889150002114Neisseria meningitidis FAM18, complete genome50S ribosomal protein L369e-0752.4
NC_003112:149593:162198162198162311114Neisseria meningitidis MC58, complete genome50S ribosomal protein L369e-0752.4
NC_003116:93576:104435104435104548114Neisseria meningitidis Z2491, complete genome50S ribosomal protein L369e-0752.4
NC_010120:2029880:203964420396442039757114Neisseria meningitidis 053442, complete genome50S ribosomal protein L369e-0752.4
NC_017513:141291:154222154222154335114Neisseria meningitidis G2136 chromosome, complete genomehypothetical protein9e-0752.4
NC_017514:2096452:210630821063082106421114Neisseria meningitidis M01-240149 chromosome, complete genome50S ribosomal protein L369e-0752.4
NC_017515:155634:168242168242168355114Neisseria meningitidis M04-240196 chromosome, complete genomehypothetical protein9e-0752.4
NC_017516:149657:162260162260162373114Neisseria meningitidis H44/76 chromosome, complete genomehypothetical protein9e-0752.4
NC_017517:153379:165686165686165799114Neisseria meningitidis M01-240355 chromosome, complete genomehypothetical protein9e-0752.4
NC_017518:150991:163609163609163722114Neisseria meningitidis NZ-05/33 chromosome, complete genomehypothetical protein9e-0752.4
NC_007575:319119:326933326933327046114Sulfurimonas denitrificans DSM 1251, complete genome50S ribosomal protein L368e-0752.4
NC_015682:736746:758253758253758366114Thermodesulfobacterium sp. OPB45 chromosome, complete genome50S ribosomal protein L368e-0752.4
NC_015707:705628:718401718401718517117Thermotoga thermarum DSM 5069 chromosome, complete genome50S ribosomal protein L36P8e-0752.4
NC_008820:2027977:204501320450132045126114Prochlorococcus marinus str. MIT 9303, complete genome50S Ribosomal protein L361e-0652
NC_002967:800109:816572816572816685114Treponema denticola ATCC 35405, complete genomeribosomal protein L361e-0652
NC_011025:361533:370666370666370779114Mycoplasma arthritidis 158L3-1, complete genomeribosomal protein L361e-0652
NC_017501:147933:161283161283161396114Neisseria meningitidis 8013, complete genome50S ribosomal protein L36 type B1e-0651.6
NC_015759:536929:543132543132543248117Weissella koreensis KACC 15510 chromosome, complete genome50S ribosomal protein L36P1e-0651.6
NC_012785:2010668:201210920121092012225117Kosmotoga olearia TBF 19.5.1, complete genomeribosomal protein L362e-0651.6
NC_011726:213956:222092222092222205114Cyanothece sp. PCC 8801, complete genomeribosomal protein L362e-0651.2
NC_013161:212941:221077221077221190114Cyanothece sp. PCC 8802, complete genomeribosomal protein L362e-0651.2
NC_010644:1491357:149381914938191493932114Elusimicrobium minutum Pei191, complete genomeribosomal protein L362e-0651.2
NC_013171:1677543:168487216848721684985114Anaerococcus prevotii DSM 20548, complete genomeribosomal protein L362e-0651.2
NC_014218:1485568:149154214915421491655114Arcanobacterium haemolyticum DSM 20595 chromosome, complete genomeribosomal protein L363e-0650.8
NC_009850:1011293:101961510196151019728114Arcobacter butzleri RM4018, complete genome50S ribosomal protein L362e-0650.8
NC_007516:347824:366939366939367052114Synechococcus sp. CC9605, complete genomeribosomal protein L362e-0650.8
NC_010001:4486170:449278844927884492901114Clostridium phytofermentans ISDg, complete genomeribosomal protein L362e-0650.8
NC_006055:140686:159933159933160046114Mesoplasma florum L1, complete genome50S ribosomal protein L363e-0650.4
NC_014484:591291:599747599747599860114Spirochaeta thermophila DSM 6192 chromosome, complete genome50S ribosomal protein L364e-0650.4
NC_014652:1032711:104962610496261049739114Caldicellulosiruptor hydrothermalis 108 chromosome, completeribosomal protein l365e-0650.1
NC_014392:969498:985719985719985832114Caldicellulosiruptor obsidiansis OB47 chromosome, complete genomeribosomal protein L365e-0650.1
NC_014657:1540500:154365015436501543763114Caldicellulosiruptor owensensis OL chromosome, complete genomeribosomal protein l365e-0650.1
NC_002771:682599:695229695229695342114Mycoplasma pulmonis UAB CTIP, complete genomeRIBOSOMAL PROTEIN L365e-0650.1
NC_009437:2367842:239322723932272393397171Caldicellulosiruptor saccharolyticus DSM 8903, complete genomeribosomal protein L366e-0649.7
NC_009828:600349:621021621021621137117Thermotoga lettingae TMO, complete genomeribosomal protein L366e-0649.7
NC_008312:4643190:464630946463094646422114Trichodesmium erythraeum IMS101, complete genomeribosomal protein L368e-0649.3
NC_009616:979861:100042410004241000540117Thermosipho melanesiensis BI429 chromosome, complete genome50S ribosomal protein L368e-0649.3
NC_017095:1429298:143830614383061438422117Fervidobacterium pennivorans DSM 9078 chromosome, complete genome50S ribosomal protein L368e-0649.3
NC_006138:1245944:128436312843631284485123Desulfotalea psychrophila LSv54, complete genomeribosomal protein L368e-0649.3
NC_011026:1284966:130580313058031305919117Chloroherpeton thalassium ATCC 35110, complete genomeribosomal protein L368e-0649.3
NC_015949:1180755:120541812054181205531114Caldicellulosiruptor lactoaceticus 6A chromosome, complete genome50S ribosomal protein L367e-0649.3
NC_012034:1783912:180870118087011808814114Anaerocellum thermophilum DSM 6725, complete genomeribosomal protein L367e-0649.3
NC_014721:1777644:180243018024301802543114Caldicellulosiruptor kristjanssonii 177R1B chromosome, completeribosomal protein l367e-0649.3
NC_007929:1463295:148472214847221484835114Lactobacillus salivarius subsp. salivarius UCC118, complete genomeLSU ribosomal protein L36P7e-0649.3
NC_014501:5471984:548465154846515484764114Cyanothece sp. PCC 7822 chromosome, complete genome50S ribosomal protein L367e-0649.3
NC_011729:4127184:414793941479394148052114Cyanothece sp. PCC 7424 chromosome, complete genome50S ribosomal protein L367e-0649.3
NC_011297:833387:858724858724858837114Dictyoglomus thermophilum H-6-12, complete genome50S ribosomal protein L369e-0648.9
NC_020134:2801199:281041128104112810524114Clostridium stercorarium subsp. stercorarium DSM 8532, completeribosomal protein L36, bacterial type1e-0548.9