Pre_GI: BLASTP Hits

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Query: NC_006511:4465495:4467214 Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC

Start: 4467214, End: 4467585, Length: 372

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This serovar has a narrow host range and causes a typhoid-like (paratyphoid fever) illness in humans. It is especially prevalent in southern and eastern Asia, and has been associated with some particularly virulent outbreaks. A number of isolates are increasingly antibiotic resistant. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011147:4460726:446244444624444462815372Salmonella enterica subsp. enterica serovar Paratyphi A strphage immunity repressor protein7e-67251
NC_014121:677799:691835691835692167333Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completeprotein ash (Protein cI)3e-40163
NC_016810:2871689:289680228968022897353552Salmonella enterica subsp. enterica serovar Typhimurium strbacteriophage protein2e-39160
NC_016857:2871689:289697028969702897353384Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74phage immunity repressor protein3e-39160
NC_003198:4676536:469127346912734691656384Salmonella enterica subsp. enterica serovar Typhi str. CT18,phage immunity repressor protein3e-39160
NC_004631:4661000:467416246741624674545384Salmonella enterica subsp. enterica serovar Typhi Ty2, completephage immunity repressor protein3e-39160
NC_009436:3367194:338105733810573381608552Enterobacter sp. 638, complete genomeCI repressor8e-39158
NC_013941:338121:359420359420359977558Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeCI repressor3e-34143
NC_013008:306953:323638323638324195558Escherichia coli O157:H7 str. TW14359 chromosome, complete genomeregulator encoded in prophage CP-933I8e-34142
NC_002695:301939:318446318446319003558Escherichia coli O157:H7 str. Sakai, complete genomeputative CI repressor8e-34142
NC_002655:301940:318447318447319004558Escherichia coli O157:H7 EDL933, complete genomeputative regulator encoded in prophage CP-933I8e-34142
NC_011353:305820:322551322551322883333Escherichia coli O157:H7 str. EC4115 chromosome, complete genomeprotein ash7e-33139
NC_011740:448000:452034452034452447414Escherichia fergusonii ATCC 35469, complete genomeregulator protein cI2e-30130
NC_013361:4959323:495932349593234959922600Escherichia coli O26:H11 str. 11368 chromosome, complete genomephage repressor protein5e-30129
NC_007613:4217557:422108942210894221688600Shigella boydii Sb227, complete genomeputative bacteriophage protein5e-30129
NC_010468:49074:490744907449664591Escherichia coli ATCC 8739, complete genomeputative bacteriophage protein4e-29126
NC_010468:1130000:115021811502181150808591Escherichia coli ATCC 8739, complete genomeputative bacteriophage protein4e-29126
NC_010498:4072681:408826040882604088664405Escherichia coli SMS-3-5, complete genomephage protein4e-29126
NC_011080:2870428:288533828853382885532195Salmonella enterica subsp. enterica serovar Newport str. SL254,phage immunity repressor protein9e-29125
NC_009778:567000:595759595759596091333Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein4e-27119
NC_016845:575123:590397590397590591195Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,phage immunity repressor protein1e-26118
NC_021066:5342127:535856553585655358759195Raoultella ornithinolytica B6, complete genomephage immunity repressor protein1e-26118
NC_010102:2862178:286489828648982865092195Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein3e-26116
NC_014306:4901390:493954549395454940084540Erwinia billingiae Eb661, complete genomePutative prophage CI repressor3e-25114
NC_013508:3593000:360692136069213607250330Edwardsiella tarda EIB202, complete genomeputative bacteriophage protein3e-25114
NC_014306:4376012:441031944103194410858540Erwinia billingiae Eb661, complete genomePhage CI repressor3e-24110
CP002797:2472908:247622824762282476623396Escherichia coli NA114, complete genomeputative phage protein2e-21100
NC_014121:1101093:111258111125811112976396Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completephage immunity repressor protein3e-21100
NC_011083:2542876:255977325597732560168396Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,phage immunity repressor protein1e-2098.2
NC_011080:4703266:471821347182134718404192Salmonella enterica subsp. enterica serovar Newport str. SL254,phage immunity repressor protein2e-1890.9
NC_020211:103371:103371103371103562192Serratia marcescens WW4, complete genomehypothetical protein2e-1270.9
NC_020211:996497:101053310105331010724192Serratia marcescens WW4, complete genomehypothetical protein4e-1270.1
NC_014500:2019113:204330220433022044042741Dickeya dadantii 3937 chromosome, complete genomeputative prophage protein2e-1064.7
NC_012917:833721:837635837635838179545Pectobacterium carotovorum subsp. carotovorum PC1, complete genome3e-1063.9
NC_011750:5045927:506195250619525062788837Escherichia coli IAI39 chromosome, complete genomeImmunity region from phage4e-0960.1
NC_011094:380428:382009382009382185177Salmonella enterica subsp. enterica serovar Schwarzengrund strphage immunity repressor protein5e-0856.6
NC_015968:3301958:332463633246363324812177Enterobacter asburiae LF7a chromosome, complete genomephage immunity repressor protein5e-0856.6
NC_014500:443874:459613459613460152540Dickeya dadantii 3937 chromosome, complete genomeputative prophage protein8e-0855.8
NC_012880:4117376:411990341199034120442540Dickeya dadantii Ech703, complete genomeprophage protein8e-0855.8
NC_012912:4194821:419766041976604198199540Dickeya zeae Ech1591, complete genomeprophage protein7e-0855.8
NC_016514:891772:902715902715902891177Enterobacter cloacae EcWSU1 chromosome, complete genomehypothetical protein1e-0755.1
NC_013592:2703327:270576327057632706277515Dickeya dadantii Ech586, complete genomehypothetical protein3e-0650.4
NC_011415:2153243:215869521586952159360666Escherichia coli SE11 chromosome, complete genomehypothetical protein5e-0649.7
NC_008150:650899:654513654513655055543Yersinia pestis Antiqua, complete genomeputative prophage protein9e-0648.9
NC_003143:1233128:123777712377771238319543Yersinia pestis CO92, complete genomeputative prophage protein9e-0648.9
NC_008149:3251196:326555532655553266097543Yersinia pestis Nepal516, complete genomeprophage protein9e-0648.9
NC_005810:1130251:114461011446101145152543Yersinia pestis biovar Microtus str. 91001, complete genomeputative prophage protein9e-0648.9
NC_009381:2939782:295414029541402954682543Yersinia pestis Pestoides F chromosome, complete genomeprophage protein9e-0648.9
NC_017168:4155143:415979341597934160335543Yersinia pestis A1122 chromosome, complete genomeputative prophage protein9e-0648.9
NC_017265:1136000:113910711391071139649543Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,putative prophage protein9e-0648.9
NC_004088:3382148:339650633965063397048543Yersinia pestis KIM, complete genomehypothetical protein9e-0648.9