Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015425: Clostridium botulinum BKT015925 chromosome, complete genome

NCBI: NC_015425

Host Lineage: Clostridium botulinum; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. This organism produces one of the most potent and deadly neurotoxins known, a botulinum toxin that prevents the release of acetylcholine at the neuromuscular junction, thereby inhibiting muscle contraction and causing paralysis. In most cases the diseased person dies of asphyxiation as a result of paralysis of chest muscles involved in breathing. The spores are heat-resistant and can survive in inadequately heated, prepared, or processed foods. Spores germinate under favorable conditions (anaerobiosis and substrate-rich environment) and bacteria start propagating very rapidly, producing the toxin. Botulinum toxin, and C. botulinum cells, has been found in a wide variety of foods, including canned ones. Almost any food that has a high pH (above 4.6) can support growth of the bacterium.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
134861*5959924739Island text3.3152321.194930.3227Neighbours21BLASTN+34861.gbk
2163000*18483321834Island text3.8753119.232234.696Neighbours21BLASTN163000.gbk
3198315*23499736683Island text3.3540318.617933.1163Neighbours21BLASTN198315.gbk
436922539209922875Island text3.1756218.622336.5635Neighbours21BLASTN369225.gbk
540505842332918272Island text3.6102418.667931.2036Neighbours21BLASTN405058.gbk
6604842*63218927348Island text2.204520.866130.9116Neighbours21BLASTN+604842.gbk
764100066421423215Island text5.0311719.301237.0774Neighbours21BLASTN+641000.gbk
871838474126222879Island text2.5997218.830429.9389Neighbours21BLASTN718384.gbk
9841754*86411622363Island text2.0557517.6125.7583Neighbours21BLASTN+841754.gbk
1090696993077623808Island text2.600217.15131.3254Neighbours21BLASTN+906969.gbk
111207314123063623323Island text6.4273118.21536.9594Neighbours21BLASTN1207314.gbk
121295261132914333883Island text3.4467719.255535.0442Neighbours21BLASTN+IslandViewer 1295261.gbk
131687050171073123682Island text3.5674218.737832.4766Neighbours21BLASTN+1687050.gbk
141867620*189009922480Island text3.4549717.752935.1078Neighbours21BLASTN+1867620.gbk
152024154*204875124598Island text4.8026920.419339.9551Neighbours21BLASTN+2024154.gbk
162072703210009927397Island text2.5059820.694628.711Neighbours21BLASTN+2072703.gbk
172144639*218744942811Island text5.2785221.920938.0622Neighbours21BLASTN+2144639.gbk
182277570*229987422305Island text5.4420220.865833.4599Neighbours21BLASTN2277570.gbk
192389400241264323244Island text2.9863817.913329.9374Neighbours21BLASTN2389400.gbk
202528549*257660648058Island text2.9469719.679331.9852Neighbours21BLASTN+2528549.gbk
212690448*273743146984Island text6.7460623.081444.0784Neighbours344BLASTN+2690448.gbk
222752482*277849926018Island text7.1450922.02742.6808Neighbours21BLASTN2752482.gbk