Pre_GI: BLASTP Hits

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Query: NC_011769:247202:260214 Desulfovibrio vulgaris str. 'Miyazaki F', complete genome

Start: 260214, End: 260414, Length: 201

Host Lineage: Desulfovibrio vulgaris; Desulfovibrio; Desulfovibrionaceae; Desulfovibrionales; Proteobacteria; Bacteria

General Information: Desulfovibrio vulgaris str. 'Miyazaki F' has one of the best characterized nickel/iron hydrogenases. A sulfate reducing bacterium. These organisms typically grow anaerobically, although some can tolerate oxygen, and they utilize a wide variety of electron acceptors, including sulfate, sulfur, nitrate, and nitrite. A number of toxic metals are reduced, including uranium (VI), chromium (VI) and iron (III), making these organisms of interest as bioremediators. Metal corrosion, a problem that is partly the result of the collective activity of these bacteria, produces billions of dollars in losses each year to the petroleum industry. These organisms are also responsible for the production of poisonous hydrogen sulfide gas in marine sediments and in terrestrial environments such as drilling sites for petroleum products. This species is a sulfate reducer commonly found in a variety of soil and aquatic environments.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011769:247202:2608282608282619281101Desulfovibrio vulgaris str. 'Miyazaki F', complete genomeGTP-binding protein YchF9e-29125
NC_014933:901897:9081189081189092211104Bacteroides helcogenes P 36-108 chromosome, complete genomeGTP-binding protein YchF6e-22102
NC_014738:55782:6007360073611641092Riemerella anatipestifer ATCC 11845 = DSM 15868 chromosome,GTP-binding protein ychf1e-1994.7
NC_015846:1522171:1541481154148115425721092Capnocytophaga canimorsus Cc5 chromosome, complete genomeGTP-dependent nucleic acid-binding protein engD3e-1993.6
NC_007168:2631535:2633861263386126349581098Staphylococcus haemolyticus JCSC1435, complete genomehypothetical protein2e-1890.9
NC_013521:2924540:2936544293654429376291086Sanguibacter keddieii DSM 10542, complete genomeGTP-binding protein YchF7e-1889.4
NC_013203:202008:2185182185182195821065Atopobium parvulum DSM 20469, complete genomeGTP-binding protein YchF7e-1889.4
NC_012968:2000218:2003773200377320048581086Methylotenera mobilis JLW8, complete genomeGTP-binding protein YchF1e-1788.6
NC_012969:2136243:2143163214316321442481086Methylovorus glucosetrophus SIP3-4 chromosome, complete genomeGTP-dependent nucleic acid-binding protein EngD2e-1788.2
NC_014733:2095996:2105093210509321061781086Methylovorus sp. MP688 chromosome, complete genomegtp-binding protein ychf2e-1788.2
NC_004722:5381208:5399280539928054003801101Bacillus cereus ATCC 14579, complete genomeGTP-binding protein1e-1788.2
NC_015731:3658956:3663131366313136642221092Nitrosomonas sp. Is79A3 chromosome, complete genomeGTP-binding protein YchF2e-1787.8
NC_013174:815155:8163548163548174631110Jonesia denitrificans DSM 20603, complete genomeGTP-binding protein YchF3e-1787
NC_006274:5267585:5288521528852152896211101Bacillus cereus E33L, complete genomeconserved GTP-binding protein4e-1786.7
NC_007530:5197854:5215025521502552161251101Bacillus anthracis str. 'Ames Ancestor', complete genomegtp-binding protein ychf4e-1786.7
NC_003997:5200805:5214899521489952159991101Bacillus anthracis str. Ames, complete genomeGTP-binding protein YchF4e-1786.7
NC_005945:5202176:5216270521627052173701101Bacillus anthracis str. Sterne, complete genomeGTP-binding protein YchF4e-1786.7
NC_012472:5239944:5257117525711752582171101Bacillus cereus 03BB102, complete genomeGTP-binding protein YchF4e-1786.7
NC_011658:5239509:5256637525663752577371101Bacillus cereus AH187 chromosome, complete genomeGTP-dependent nucleic acid-binding protein EngD4e-1786.7
NC_012659:5200831:5214925521492552160251101Bacillus anthracis str. A0248, complete genomeGTP-dependent nucleic acid-binding protein EngD4e-1786.7
NC_012918:1697860:1729471172947117305651095Geobacter sp. M21 chromosome, complete genomeGTP-dependent nucleic acid-binding protein EngD4e-1786.7
NC_016771:5191937:5209064520906452101641101Bacillus cereus NC7401, complete genomeGTP-binding protein YchF4e-1786.7
NC_016779:5189139:5210512521051252116121101Bacillus cereus F837/76 chromosome, complete genomeGTP-binding and nucleic acid-binding protein YchF4e-1786.7
NC_017200:5325977:5343097534309753441971101Bacillus thuringiensis serovar finitimus YBT-020 chromosome,GTP-binding protein YchF4e-1786.7
NC_014935:1511835:1528724152872415298271104Nitratifractor saLSUginis DSM 16511 chromosome, complete genomegtp-binding protein ychf6e-1785.9
NC_012660:819381:8306608306608317601101Pseudomonas fluorescens SBW25 chromosome, complete genomeGTP-dependent nucleic acid-binding protein EngD7e-1785.9
NC_010162:10208521:1023122410231224102323151092Sorangium cellulosum 'So ce 56', complete genomeGTP-dependent nucleic acid-binding protein EngD9e-1785.5
NC_010995:764567:7794357794357805261092Cellvibrio japonicus Ueda107, complete genomeGTP-binding protein YchF9e-1785.5
NC_008262:2025699:2025699202569920267961098Clostridium perfringens SM101, complete genomeGTP-binding protein YchF1e-1685.1
NC_010814:2758902:2778939277893927800331095Geobacter lovleyi SZ, complete genomeGTP-binding protein YchF1e-1685.1
NC_004917:1323783:1326545132654513276451101Helicobacter hepaticus ATCC 51449, complete genomehypothetical protein1e-1685.1
NC_006138:857692:8794778794778805741098Desulfotalea psychrophila LSv54, complete genomeGTP-binding protein (YchF)1e-1684.7
NC_004578:1190000:1215889121588912169891101Pseudomonas syringae pv. tomato str. DC3000, complete genomeGTP-binding protein YchF2e-1684.3
NC_015733:864959:8764508764508775501101Pseudomonas putida S16 chromosome, complete genomeGTP-dependent nucleic acid-binding protein EngD2e-1684.3
NC_020209:47504:1068961068961079961101Pseudomonas poae RE*1-1-14, complete genomeGTP-binding protein YchF2e-1684
NC_010645:558974:5621535621535632441092Bordetella avium 197N, complete genomeGTP-dependent nucleic acid-binding protein EngD3e-1683.6
NC_009656:5475540:5481249548124954823491101Pseudomonas aeruginosa PA7 chromosome, complete genomeGTP-dependent nucleic acid-binding protein EngD3e-1683.6
NC_017187:691769:7086947086947097971104Arcobacter butzleri ED-1, complete genomeGTP-binding protein4e-1683.2
NC_014622:5251000:5264045526404552651451101Paenibacillus polymyxa SC2 chromosome, complete genomeGTPase translation factor4e-1683.2
NC_017033:678321:6807586807586818491092Frateuria aurantia DSM 6220 chromosome, complete genomeGTP-binding protein YchF5e-1683.2
NC_014335:5165211:5183200518320051843001101Bacillus cereus biovar anthracis str. CI chromosome, completeGTP-binding protein YchF5e-1683.2
NC_005125:3420270:3440202344020234412961095Gloeobacter violaceus PCC 7421, complete genomehypothetical protein6e-1682.8
NC_014483:4891100:4904852490485249059521101Paenibacillus polymyxa E681 chromosome, complete genomeGTP-dependent nucleic acid-binding protein engD6e-1682.8
NC_016641:1006662:1026590102659010276901101Paenibacillus terrae HPL-003 chromosome, complete genomeGTP-binding protein YchF5e-1682.8
NC_017223:3345902:3366251336625133673421092Bordetella pertussis CS chromosome, complete genomeGTP-dependent nucleic acid-binding protein EngD8e-1682.4
NC_002929:3305682:3326031332603133271221092Bordetella pertussis Tohama I, complete genomehypothetical protein8e-1682.4
NC_002927:960369:9647419647419658321092Bordetella bronchiseptica RB50, complete genomehypothetical protein8e-1682.4
NC_009434:3434381:3436690343669034377901101Pseudomonas stutzeri A1501, complete genometranslation-associated GTPase9e-1682.4
NC_009328:3504454:3535635353563535367351101Geobacillus thermodenitrificans NG80-2 chromosome, complete genomeGTP-dependent nucleic acid-binding protein EngD9e-1682
NC_009725:3878862:3902953390295339040531101Bacillus amyloliquefaciens FZB42, complete genomeEngD1e-1581.6
NC_017188:3900951:3921913392191339230131101Bacillus amyloliquefaciens TA208 chromosome, complete genomeGTP-binding protein YchF1e-1581.6
NC_017191:3901914:3923605392360539247051101Bacillus amyloliquefaciens XH7 chromosome, complete genomeGTP-dependent nucleic acid-binding protein EngD1e-1581.6
NC_019842:3921424:3945726394572639468261101Bacillus amyloliquefaciens subsp. plantarum AS43.3 chromosome,GTP-binding protein YchF1e-1581.6
NC_020410:3868573:3894657389465738957571101Bacillus amyloliquefaciens subsp. plantarum UCMB5036 completeputative GTPase with RNA binding site1e-1581.6
NC_013316:2968000:2988047298804729891441098Clostridium difficile R20291, complete genomeputative GTP-binding protein2e-1581.3
NC_013315:2887559:2907489290748929085861098Clostridium difficile CD196 chromosome, complete genomeGTP-binding protein2e-1581.3
NC_017179:2895571:2915501291550129165981098Clostridium difficile BI1, complete genomeGTP-binding protein YchF2e-1581.3
NC_010170:4196197:4220054422005442211451092Bordetella petrii, complete genomeputative GTP binding protein2e-1581.3
NC_013421:2613137:2618668261866826197591092Pectobacterium wasabiae WPP163, complete genomeGTP-binding protein YchF2e-1581.3
NC_014218:1619982:1639085163908516401821098Arcanobacterium haemolyticum DSM 20595 chromosome, complete genomeGTP-binding protein YchF2e-1581.3
NC_010725:2589014:2612714261271426138111098Methylobacterium populi BJ001, complete genomeGTP-binding protein YchF2e-1580.9
NC_020064:2697116:2707722270772227088131092Serratia marcescens FGI94, complete genomeGTP-binding protein YchF5e-1579.7
NC_014618:2139639:2155341215534121564321092Enterobacter cloacae SCF1 chromosome, complete genomeGTP-binding protein YchF5e-1579.7
NC_010617:774914:7812797812797823641086Kocuria rhizophila DC2201, complete genomeputative GTP-binding protein5e-1579.7
NC_015410:1202370:1215751121575112168511101Pseudomonas mendocina NK-01 chromosome, complete genomeGTP-dependent nucleic acid-binding protein EngD5e-1579.7
NC_014833:2855543:2870257287025728713511095Ruminococcus albus 7 chromosome, complete genomeGTP-binding protein YchF4e-1579.7
NC_014500:2479814:2488646248864624897371092Dickeya dadantii 3937 chromosome, complete genomeputative GTP-binding protein7e-1579.3
NC_010634:2252329:2272222227222222733131092Yersinia pseudotuberculosis PB1/+, complete genomeGTP-binding protein YchF6e-1579.3
NC_006155:2334122:2354015235401523551061092Yersinia pseudotuberculosis IP 32953, complete genomehypothetical protein6e-1579.3
NC_011283:2103500:2126151212615121272451095Klebsiella pneumoniae 342 chromosome, complete genomeGTP-dependent nucleic acid-binding protein EngD1e-1479
NC_014323:4665610:4672014467201446731081095Herbaspirillum seropedicae SmR1 chromosome, complete genomeGTP-binding protein9e-1579
NC_012856:2931995:2937598293759829386891092Ralstonia pickettii 12D chromosome 1, complete genomeGTP-binding protein YchF9e-1579
NC_010694:2138000:2140020214002021411111092Erwinia tasmaniensis, complete genomePutative GTP-binding protein9e-1579
NC_012658:1581486:1585856158585615869531098Clostridium botulinum Ba4 str. 657 chromosome, complete genomeGTP-dependent nucleic acid-binding protein EngD9e-1579
NC_012563:1704345:1724172172417217252691098Clostridium botulinum A2 str. Kyoto, complete genomeGTP-binding protein YchF9e-1579
NC_009439:1174432:1189980118998011910801101Pseudomonas mendocina ymp, complete genometranslation-associated GTPase9e-1579
NC_012803:1753138:1767460176746017685241065Micrococcus luteus NCTC 2665, complete genomeGTP-binding conserved hypothetical protein TIGR006509e-1579
NC_012214:2221702:2227917222791722290081092Erwinia pyrifoliae Ep1/96, complete genomePutative GTP-binding protein1e-1478.6
NC_007643:4294818:4296213429621342973161104Rhodospirillum rubrum ATCC 11170, complete genomehypothetical protein1e-1478.6
NC_010067:1116148:1134163113416311352541092Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein1e-1478.6
NC_021066:839734:8639888639888650821095Raoultella ornithinolytica B6, complete genomeGTP-binding protein YchF1e-1478.6
NC_016816:2684336:2690971269097126920621092Pantoea ananatis LMG 5342, complete genomeGTP-dependent nucleic acid-binding protein EngD2e-1478.2
NC_015224:2095816:2113155211315521142461092Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,GTP-dependent nucleic acid-binding protein EngD2e-1478.2
NC_003198:1771432:1803420180342018045111092Salmonella enterica subsp. enterica serovar Typhi str. CT18,putative ATP/GTP-binding protein2e-1478.2
NC_004547:2470978:2486231248623124873221092Erwinia carotovora subsp. atroseptica SCRI1043, complete genomeputative ATP/GTP-binding protein2e-1478.2
NC_004668:3156247:3178675317867531797901116Enterococcus faecalis V583, complete genomeGTP-binding protein, GTP1/OBG family1e-1478.2
NC_014210:144036:1627161627161638011086Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,GTP-binding protein YchF1e-1478.2
NC_015663:3586836:3601988360198836030791092Enterobacter aerogenes KCTC 2190 chromosome, complete genomeGTP-binding protein YchF1e-1478.2
NC_014215:1841064:1851554185155418526451092Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1,GTPase YchF2e-1477.8
NC_013508:1491945:1508838150883815099291092Edwardsiella tarda EIB202, complete genometranslation-associated GTPase2e-1477.8
NC_013729:5982000:6001295600129560023921098Kribbella flavida DSM 17836, complete genomeGTP-binding protein YchF2e-1477.8
NC_018750:5078705:5084328508432850854161089Streptomyces venezuelae ATCC 10712, complete genomeGTP-binding and nucleic acid-binding protein YchF2e-1477.8
NC_014121:1589389:1609106160910616101971092Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completetranslation-associated GTPase3e-1477.4
NC_016514:2713834:2720011272001127211051095Enterobacter cloacae EcWSU1 chromosome, complete genomeGTP-dependent nucleic acid-binding protein engD3e-1477.4
NC_008699:1132790:1138517113851711395961080Nocardioides sp. JS614, complete genomeGTP-binding protein YchF3e-1477.4
NC_016109:5290000:5296803529680352978761074Kitasatospora setae KM-6054, complete genomeputative GTP-dependent nucleic acid-binding protein EngD3e-1477.4
NC_021064:1705961:1727441172744117285141074Propionibacterium avidum 44067, complete genomeGTP-binding protein YchF3e-1477.4
NC_015737:2691246:2719056271905627201561101Clostridium sp. SY8519, complete genomeputative GTPase3e-1477.4
NC_017218:1166844:1179241117924111803411101Bifidobacterium breve ACS-071-V-Sch8b chromosome, complete genomeGTP-binding protein YchF2e-1477.4
NC_017219:1830353:1842738184273818438381101Bifidobacterium longum subsp. infantis ATCC 15697, complete genomeGTPase2e-1477.4
NC_011593:1830500:1842948184294818441261179Bifidobacterium longum subsp. infantis ATCC 15697 chromosome,GTP-dependent nucleic acid-binding protein EngD2e-1477.4
NC_013716:1918664:1924727192472719258181092Citrobacter rodentium ICC168, complete genomeGTP-dependent nucleic acid-binding protein3e-1477
NC_013961:1622616:1662479166247916635701092Erwinia amylovora, complete genomeputative GTP-binding protein 93e-1477
NC_013971:1660144:1700006170000617010971092Erwinia amylovora ATCC 49946 chromosome, complete genomeGTP-dependent nucleic acid-binding protein3e-1477
NC_015125:3284095:3287473328747332885551083Microbacterium testaceum StLB037, complete genomepredicted GTPase, probable translation factor3e-1477
NC_016818:2542295:2547933254793325490241092Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completeGTP-binding protein YchF4e-1476.6
NC_013894:1476956:1494548149454814956541107Thermocrinis albus DSM 14484 chromosome, complete genomeGTP-binding protein YchF6e-1476.3
NC_015953:4746983:4754198475419847552861089Streptomyces sp. SirexAA-E chromosome, complete genomeGTP-binding protein YchF5e-1476.3
NC_006677:1255079:1255079125507912561731095Gluconobacter oxydans 621H, complete genomeGTP-binding protein7e-1475.9
NC_013446:4511602:4525034452503445261311098Comamonas testosteroni CNB-2, complete genomeGTP-binding protein YchF8e-1475.9
NC_010544:362033:3620333620333631241092Candidatus Phytoplasma australiense, complete genomePutative GTPase, probable translation factor1e-1375.1
NC_012704:696374:7000217000217011331113Corynebacterium kroppenstedtii DSM 44385, complete genomeputative GTP-binding protein1e-1375.1
NC_020302:1074120:1080985108098510820701086Corynebacterium halotolerans YIM 70093 = DSM 44683, completeGTP-binding protein YchF1e-1375.1
NC_014774:605085:6255786255786266811104Candidatus Liberibacter solanacearum CLso-ZC1 chromosome, completetranslation-associated GTPase1e-1374.7
NC_016012:879972:8877118877118888051095Candidatus Arthromitus sp. SFB-rat-Yit, complete genomeGTP-dependent nucleic acid-binding protein EngD2e-1373.9
NC_013172:2556517:2570290257029025713751086Brachybacterium faecium DSM 4810, complete genomeGTP-binding protein YchF4e-1373.6
NC_017094:828836:8411268411268422201095Leptospirillum ferrooxidans C2-3, complete genomeGTP-binding protein8e-1372.4
NC_014643:195948:2108792108792119641086Rothia dentocariosa ATCC 17931 chromosome, complete genomeGTP-binding protein YchF4e-1270.1
NC_014391:6000834:6017755601775560188401086Micromonospora aurantiaca ATCC 27029 chromosome, complete genomeGTP-binding protein YchF4e-1270.1
NC_018607:662697:6807406807406818401101Brachyspira pilosicoli B2904 chromosome, complete genometranslation associated GTPase5e-1269.7
NC_014330:2026193:2044751204475120458511101Brachyspira pilosicoli 95/1000 chromosome, complete genometranslation associated GTPase5e-1269.7
NC_019908:1225690:1227028122702812281281101Brachyspira pilosicoli P43/6/78 chromosome, complete genometranslation associated GTPase5e-1269.7
NC_015161:758929:7716607716607727601101Deinococcus proteolyticus MRP chromosome, complete genomeGTP-binding protein YchF8e-1268.9
NC_018604:789575:8076518076518087511101Brachyspira pilosicoli WesB complete genometranslation associated GTPase1e-1168.6
NC_002932:296557:2965572965572976481092Chlorobium tepidum TLS, complete genomeGTP-binding protein2e-1167.8
NC_001263:1378605:1391767139176713928641098Deinococcus radiodurans R1 chromosome 1, complete sequencehypothetical protein4e-1166.6
NC_008595:1176658:1179704117970411807561053Mycobacterium avium 104, complete genomeGTP-binding protein YchF6e-1166.2
NC_013939:441921:4463834463834474741092Deferribacter desulfuricans SSM1, complete genomeGTP-binding protein1e-1065.5
NC_015672:1921023:1937900193790019389911092Flexistipes sinusarabici DSM 4947 chromosome, complete genomeGTP-binding protein YchF3e-1063.5
NC_014448:626909:6411536411536422561104Mycoplasma hyorhinis HUB-1 chromosome, complete genomePredicted GTPase, probable translation factor4e-1063.5
NC_011653:1339868:1347847134784713489141068Thermosipho africanus TCF52B, complete genomeGTP-binding protein YchF6e-0959.7
NC_016751:469289:4712364712364723151080Marinitoga piezophila KA3 chromosome, complete genomeGTP-binding protein YchF3e-0857.4
NC_010003:1126800:1132486113248611335681083Petrotoga mobilis SJ95, complete genomeProtein of unknown function DUF9333e-0857.4