Pre_GI: BLASTP Hits

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Query: NC_008380:2210649:2250685 Rhizobium leguminosarum bv. viciae 3841, complete genome

Start: 2250685, End: 2256162, Length: 5478

Host Lineage: Rhizobium leguminosarum; Rhizobium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This biovar nodulates legumes in the Tribe Viciae (Vicia, Pisum, Lathyrus, Lens). This strain is a spontaneous streptomycin-resistant mutant of strain 300. Nitrogen-fixing plant symbiont. This organism, like other Rhizobia, establishes a symbiotic relationship with a legume plant, providing nitrogen in exchange for a protected environment. The legume roots secrete flavonoids and isoflavonoids which the bacteria recognize and use to turn on genes involved in root nodulation. Many of the root nodulation genes are involved in synthesis and secretion of a nodule inducing signal, a lipochito-oligosaccharide molecule, which the plant recognizes, triggering nodule formation. The bacterium is endocytosed and exists inside a membrane bound organelle, the symbiosome, and fixes nitrogen for the plant cell while the host cell provides carbon compounds for the bacterium to grow on. The nitrogen fixation is important as it obviates the need for expensive and environmentally damaging fertilizer use.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013947:3080290:3092360309236030977655406Stackebrandtia nassauensis DSM 44728 chromosome, complete genomehypothetical protein4e-177623
NC_009050:212270:2462342462342526056372Rhodobacter sphaeroides ATCC 17029 chromosome 2, complete sequenceSuperfamily I DNA and RNA helicases and helicase subunits-like protein3e-158560
NC_014221:2392150:2407750240775024132095460Truepera radiovictrix DSM 17093 chromosome, complete genometranscription elongation factor GreA/GreB domain protein4e-147523
NC_011884:3099488:3123213312321331283815169Cyanothece sp. PCC 7425, complete genomehypothetical protein2e-131471
NC_010172:480000:5091665091665153036138Methylobacterium extorquens PA1, complete genomehypothetical protein1e-130469
NC_007948:1972290:2012625201262520189156291Polaromonas sp. JS666, complete genomeSuperfamily I DNA and RNA helicases and helicase subunits-like2e-122441
NC_010334:2090990:2090990209099020967405751Shewanella halifaxensis HAW-EB4, complete genomehypothetical protein2e-121438
NC_015703:3880903:3893805389380539000416237Runella slithyformis DSM 19594 chromosome, complete genometranscription elongation factor GreA/GreB domain-containing protein3e-120434
NC_016629:3789554:3809766380976638149855220Desulfovibrio africanus str. Walvis Bay chromosome, completehypothetical protein2e-114414
NC_009952:997950:1009203100920310138824680Dinoroseobacter shibae DFL 12, complete genomeputative DNA helicase related protein1e-106389
NC_016048:2678205:2686090268609026907154626Oscillibacter valericigenes Sjm18-20, complete genomehypothetical protein2e-104381
NC_015740:3631326:3639493363949336442654773Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completeDNA/RNA helicase6e-104380
NC_014774:1120383:1120383112038311257435361Candidatus Liberibacter solanacearum CLso-ZC1 chromosome, completehypothetical protein2e-103378
NC_011769:2542000:2549908254990825554935586Desulfovibrio vulgaris str. 'Miyazaki F', complete genomeputative superfamily I DNA and RNA helicase protein7e-103376
NC_016625:1259778:1265459126545912701294671Burkholderia sp. YI23 chromosome 2, complete sequenceputative DNA helicase-like protein9e-102373
NC_013132:893849:9126829126829173614680Chitinophaga pinensis DSM 2588, complete genomeDNA/RNA helicase2e-101371
NC_011901:1860887:1881132188113218858594728Thioalkalivibrio sulfidophilus HL-EbGr7 chromosome, completehypothetical protein3e-101371
NC_009675:4281249:4290307429030742942933987Anaeromyxobacter sp. Fw109-5 chromosome, complete genomehypothetical protein2e-100368
NC_018000:4958637:4977255497725549828165562Sinorhizobium fredii USDA 257 chromosome, complete genomeATP-dependent helicase3e-100368
NC_007086:2477040:2502709250270925091796471Xanthomonas campestris pv. campestris str. 8004, complete genomeDNA helicase related protein1e-99366
NC_003902:2469500:2469862246986224765366675Xanthomonas campestris pv. campestris str. ATCC 33913, completeDNA helicase related protein1e-99366
NC_014310:279912:2959372959373015675631Ralstonia solanacearum PSI07 megaplasmid, complete sequenceDNA helicase-like protein1e-99365
NC_002947:4167500:4201148420114842077716624Pseudomonas putida KT2440, complete genomeDNA helicase-related protein7e-99363
NC_015137:2582467:2596997259699726036236627Burkholderia sp. CCGE1001 chromosome 2, complete sequenceDNA helicase-like protein2e-97358
NC_007492:2203220:2209453220945322148645412Pseudomonas fluorescens PfO-1, complete genomeDNA helicase-related protein1e-96356
NC_012028:451982:4730084730084812878280Halorubrum lacusprofundi ATCC 49239 chromosome 2, complete genometype III restriction protein res subunit5e-96353
NC_015216:2070756:2077641207764120828005160Methanobacterium sp. AL-21 chromosome, complete genomeDNA helicase-like protein1e-95352
NC_014365:2810405:2822643282264328290716429Desulfarculus baarsii DSM 2075 chromosome, complete genomeDNA helicase related protein7e-95350
NC_010552:752007:7597217597217663146594Burkholderia ambifaria MC40-6 chromosome 2, complete sequenceDNA helicase related protein6e-94347
NC_014408:806720:8067208067208115104791Methanothermobacter marburgensis str. Marburg chromosome, completeDNA helicase related protein7e-93343
NC_016642:471656:4748764748764816436768Pseudovibrio sp. FO-BEG1 chromosome, complete genomehypothetical protein7e-93343
NC_013971:2408522:2417498241749824230115514Erwinia amylovora ATCC 49946 chromosome, complete genomehypothetical protein1e-92343
NC_013961:2370994:2379970237997023854835514Erwinia amylovora, complete genomeSuperfamily I DNA and RNA helicase and helicase subunits-like protein1e-92343
NC_008751:1043269:1062386106238610682625877Desulfovibrio vulgaris subsp. vulgaris DP4, complete genomeconserved hypothetical protein, putative DNA helicase3e-91338
NC_014376:3009403:3009403300940330144545052Clostridium saccharolyticum WM1 chromosome, complete genomehelicase5e-91337
NC_008942:1446682:1466548146654814712664719Methanocorpusculum labreanum Z, complete genomehypothetical protein2e-90335
NC_007086:2887875:2900965290096529065715607Xanthomonas campestris pv. campestris str. 8004, complete genomeDNA helicase related protein9e-90333
NC_014306:3006028:3017915301791530237915877Erwinia billingiae Eb661, complete genomeSuperfamily I DNA and RNA helicase subunit1e-89333
NC_008576:357893:3653283653283712495922Magnetococcus sp. MC-1, complete genomesuperfamily I DNA and RNA helicase and helicase subunit9e-89330
NC_011761:1357799:1357799135779913643956597Acidithiobacillus ferrooxidans ATCC 23270 chromosome, completehypothetical protein8e-88326
NC_013173:1305916:1321479132147913273585880Desulfomicrobium baculatum DSM 4028, complete genomeconserved hypothetical protein, putative DNA helicase5e-86320
NC_010943:3069082:3076745307674530788082064Stenotrophomonas maltophilia K279a, complete genomehypothetical protein1e-84316
NC_012483:1813521:1823766182376618278334068Acidobacterium capsulatum ATCC 51196, complete genomehypothetical protein9e-83310
NC_013235:1218378:1233313123331312389165604Nakamurella multipartita DSM 44233, complete genomeputative superfamily I DNA and RNA helicase protein1e-82309
NC_013205:1548500:1608001160800116122124212Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446,Superfamily I DNA and RNA helicase and helicase subunits-like protein3e-78295
NC_005877:198522:2033562033562071833828Picrophilus torridus DSM 9790, complete genomeDNA helicase1e-70270
NC_000853:648075:6480756480756519443870Thermotoga maritima MSB8, complete genomehypothetical protein8e-67256
NC_013642:400651:4133214133214171633843Thermotoga naphthophila RKU-10, complete genomeAAA ATPase1e-66256
NC_008596:1302000:1327732132773213339086177Mycobacterium smegmatis str. MC2 155, complete genomehypothetical protein6e-63244
NC_016943:3270308:3270308327030832762265919Blastococcus saxobsidens DD2, complete genomeputative ATP-dependent helicase5e-60234
NC_008705:868623:8736718736718800486378Mycobacterium sp. KMS, complete genomeconserved hypothetical protein, putative DNA helicase9e-60233
NC_008146:861319:8663678663678727446378Mycobacterium sp. MCS, complete genomeconserved hypothetical protein, putative DNA helicase9e-60233
NC_018581:2768743:2789405278940527953985994Gordonia sp. KTR9 chromosome, complete genomeSuperfamily I DNA and RNA helicase and helicase subunits9e-57223
NC_017904:2162045:2181591218159121880436453Mycobacterium sp. MOTT36Y chromosome, complete genomeDNA helicase2e-56222
NC_015125:1668780:1668780166878016752746495Microbacterium testaceum StLB037, complete genomesuperfamily I DNA and RNA helicase and helicase subunits2e-56222
NC_018080:2288700:2332116233211623384126297Pseudomonas aeruginosa DK2 chromosome, complete genomehypothetical protein8e-49197
NC_002516:3079850:3083485308348530861452661Pseudomonas aeruginosa PAO1, complete genomehypothetical protein1e-48196
NC_008463:2467219:2493939249393925002356297Pseudomonas aeruginosa UCBPP-PA14, complete genomehypothetical protein1e-48196
NC_011770:2499432:2550676255067625569726297Pseudomonas aeruginosa LESB58, complete genomehypothetical protein1e-48196
NC_009656:2512733:2541001254100125472976297Pseudomonas aeruginosa PA7 chromosome, complete genomehypothetical protein1e-48196
NC_008060:1544920:1562247156224715685526306Burkholderia cenocepacia AU 1054 chromosome 1, complete sequenceserine/threonine protein kinase1e-47193
NC_008544:615448:6154486154486217536306Burkholderia cenocepacia HI2424 chromosome 3, complete sequenceserine/threonine protein kinase1e-47193
NC_010512:1196616:1196616119661612029126297Burkholderia cenocepacia MC0-3 chromosome 3, complete sequenceserine/threonine protein kinase2e-47192
NC_000908:160072:1758051758051791463342Mycoplasma genitalium G37, complete genomehypothetical protein2e-35152
NC_012214:1117325:1128597112859711298681272Erwinia pyrifoliae Ep1/96, complete genomehypothetical protein1e-30136
NC_014727:1136589:1143692114369211507327041Lactobacillus delbrueckii subsp. bulgaricus ND02 chromosome,DNA helicase2e-29132
NC_007517:3430237:3439706343970634450785373Geobacter metallireducens GS-15, complete genomeSuperfamily I DNA and RNA helicases and helicase subunits-like2e-26122
NC_020302:1241504:1253510125351012578984389Corynebacterium halotolerans YIM 70093 = DSM 44683, completesuperfamily protein I DNA/RNA helicase7e-26120
NC_013929:4549988:4582917458291745884545538Streptomyces scabiei 87.22 chromosome, complete genomehypothetical protein2e-25119
NC_016906:181254:2187152187152222273513Gordonia polyisoprenivorans VH2 chromosome, complete genomeputative DNA helicase2e-24116
NC_015222:94847:1004471004471050844638Nitrosomonas sp. AL212 chromosome, complete genomeDNA helicase, putative3e-24115
NC_014210:3248526:3248526324852632529954470Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,protein of unknown function DUF5591e-23113
NC_009142:5698100:5732738573273857380625325Saccharopolyspora erythraea NRRL 2338, complete genomesimilar to superfamily I DNA and RNA helicases and helicase subunits3e-23112
NC_015942:3090275:3109116310911631136664551Acidithiobacillus ferrivorans SS3 chromosome, complete genomehypothetical protein5e-22108
NC_007333:810381:8395388395388440104473Thermobifida fusca YX, complete genomesimilar to Superfamily I DNA and RNA helicases and helicase subunits6e-22107
NC_009495:128000:1328751328751369274053Clostridium botulinum A str. ATCC 3502 chromosome, complete genomehypothetical protein7e-21104
NC_009697:120117:1256781256781297304053Clostridium botulinum A str. ATCC 19397 chromosome, completehypothetical protein7e-21104
NC_009698:120119:1256801256801297324053Clostridium botulinum A str. Hall chromosome, complete genomehypothetical protein7e-21104
NC_012563:122000:1268111268111308634053Clostridium botulinum A2 str. Kyoto, complete genomehypothetical protein1e-20103
NC_010803:634497:6478486478486527404893Chlorobium limicola DSM 245, complete genomesuperfamily I DNA and RNA helicase subunits-like protein1e-20103
NC_009699:122000:1276781276781317304053Clostridium botulinum F str. Langeland chromosome, complete genomehypothetical protein1e-20103
NC_014328:180482:1922491922491963344086Clostridium ljungdahlii ATCC 49587 chromosome, complete genomehypothetical protein3e-20102
NC_012658:125500:1303561303561344084053Clostridium botulinum Ba4 str. 657 chromosome, complete genomehypothetical protein3e-20102
NC_015660:1896904:1907447190744719118324386Geobacillus thermoglucosidasius C56-YS93 chromosome, completehypothetical protein3e-20102
NC_014650:1862165:1883998188399818883834386Geobacillus sp. Y4.1MC1 chromosome, complete genomehypothetical protein3e-20102
NC_008268:1748635:1762421176242117677335313Rhodococcus sp. RHA1, complete genomepossible DNA helicase7e-20101
NC_016604:917972:9209989209989263585361Mycobacterium rhodesiae NBB3 chromosome, complete genomeIstB-like ATP binding protein9e-20100
NC_010516:127000:1326561326561367084053Clostridium botulinum B1 str. Okra, complete genomehypothetical protein9e-20100
NC_013851:3321853:3338309333830933417883480Allochromatium vinosum DSM 180 chromosome, complete genomeprotein of unknown function DUF5591e-19100
NC_010520:121077:1266381266381306904053Clostridium botulinum A3 str. Loch Maree, complete genomehypothetical protein2e-1999.8
NC_017093:7255652:7255652725565272578982247Actinoplanes missouriensis 431, complete genomehypothetical protein3e-1895.9
NC_016114:648422:6719446719446766474704Streptomyces flavogriseus ATCC 33331 chromosome, complete genomesuperfamily I DNA/RNA helicase1e-1690.5
NC_014220:70490:7360573605781374533Syntrophothermus lipocalidus DSM 12680 chromosome, complete genomeprotein of unknown function DUF5598e-1687.8
NC_013174:2163947:2166431216643121709304500Jonesia denitrificans DSM 20603, complete genomehypothetical protein3e-1585.9
NC_002516:3079850:3079850307985030834823633Pseudomonas aeruginosa PAO1, complete genomehypothetical protein8e-1584.3
NC_012214:1117325:112480611248061125675870Erwinia pyrifoliae Ep1/96, complete genomehypothetical protein3e-1379.3
NC_013947:3080290:3088272308827230918623591Stackebrandtia nassauensis DSM 44728 chromosome, complete genomepeptidase C14 caspase catalytic subunit p201e-1277.4
NC_015385:2135456:2135456213545621384913036Treponema succinifaciens DSM 2489 chromosome, complete genomehypothetical protein2e-1276.3
NC_008741:81914:8897988979925093531Desulfovibrio vulgaris subsp. vulgaris DP4 plasmid pDVUL01,hypothetical protein2e-1173.6
NC_015436:1758257:1770034177003417728682835Spirochaeta coccoides DSM 17374 chromosome, complete genomeDNA helicase2e-1069.7
NC_005090:1033746:1058201105820110606482448Wolinella succinogenes DSM 1740, complete genomeATP-BINDING PROTEIN4e-1068.6
NC_015425:2528549:2572938257293825766063669Clostridium botulinum BKT015925 chromosome, complete genomeDNA helicase4e-0965.5
NC_010803:242705:2648122648122675802769Chlorobium limicola DSM 245, complete genomeDNA helicase5e-0965.1
NC_006512:1722138:1728654172865417313862733Idiomarina loihiensis L2TR, complete genomeSuperfamily I DNA/RNA helicase6e-0964.7
NC_016906:181254:2157262157262172581533Gordonia polyisoprenivorans VH2 chromosome, complete genomeputative DNA helicase4e-0862
NC_014656:1956277:1977931197793119815543624Bifidobacterium longum subsp. longum BBMN68 chromosome, completehypothetical protein4e-0862
NC_008570:1143578:1147784114778411504802697Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genomehypothetical protein1e-0760.8
NC_017297:122383:1279431279431305312589Clostridium botulinum F str. 230613 chromosome, complete genome1e-0760.5
NC_015381:2859000:2862834286283428655932760Burkholderia gladioli BSR3 chromosome 1, complete sequenceATP-binding protein2e-0656.6
NC_015690:7785875:7838600783860078420193420Paenibacillus mucilaginosus KNP414 chromosome, complete genomeDNA helicase9e-0654.3