Pre_GI Gene

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Host: NC_006512 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_006512:1722138 Idiomarina loihiensis L2TR, complete genome

Host Lineage: Idiomarina loihiensis; Idiomarina; Idiomarinaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: This is the type strain for this organism, which was isolated from a hydrothermal vent at a depth of 1300 m from the Lo'ihi Seamount southeast of Hawaii. This organism grows optimally in salt concentrations of 7.5 to 10%. Genome comparison has suggested that the bacterium has maintained its amino acid transport and degradation systems but lost sugar transport and certain sugar metabolic genes suggesting that it lives on amino acids rather than sugars. This may be in keeping with the environment this organism grows in, which is at hydrothermal deep sea vents that are characterized by collections of proteinaceous particles. This organism may colonize these particles by producing exopolysaccharides.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
172213817233131176Sugar efflux permease MFS-likeQuickGO ontologyBLASTP
17234121724239828Predicted DNA-binding protein possible transcriptional regulatorQuickGO ontologyBLASTP
17241791725045867Short chain dehydrogenasereductase family proteinQuickGO ontologyBLASTP
17251881726105918Transcriptional regulator LysR familyQuickGO ontologyBLASTP
17261511726873723Acyl carrier protein phosphodiesteraseQuickGO ontologyBLASTP
17270131727864852Transcriptional regulator LysR familyQuickGO ontologyBLASTP
17280441728604561Predicted secreted proteinQuickGO ontology
172865417313862733Superfamily I DNARNA helicaseQuickGO ontologyBLASTP
17314311731958528hypothetical proteinBLASTP
17319241732211288Transposon related ORF HTH transcriptional regulatorQuickGO ontologyBLASTP
17322771733065789Transposase Tra5 related proteinQuickGO ontologyBLASTP
173329717343641068hypothetical proteinBLASTP
173488417358881005hypothetical proteinBLASTP
17360621736577516hypothetical proteinBLASTP
17365771737380804hypothetical proteinBLASTP
17376251738422798LigB family enzymeQuickGO ontologyBLASTP
173865017398671218hypothetical protein
17408811741159279Transposon related ORF HTH transcriptional regulatorQuickGO ontologyBLASTP
17412441741414171hypothetical protein
17414141742037624Transposase Tra5 related proteinQuickGO ontologyBLASTP
17420451742236192Predicted LytTr DNA-binding domainQuickGO ontology
17422391742616378Unchararacterized conserved membrane proteinQuickGO ontology
17427391743299561Integraserecombinase XerCXerD familyQuickGO ontologyBLASTP
174359317467243132Metal efflux system membrane component silver efflux pump relatedQuickGO ontologyBLASTP